Rh3DG282800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
28807698 .. 28808968
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG282800.1

Sequence Viewer

Length: 267 bp
ATGTGCTTGTCTTCACTGCAGGGTTGTTTTTGTAGCATTACAAATTCGCTTGGAGAGAGCTTGGACAACAACTTCAACTTCAACTGTTATTTGTTGACTACAGGGAGGTTGCAGGGAGAGACAGCGGCAACAGCTAGGAGAAGATCTGAGATTACTCCTCAGCTGGACAAGCACAATAACCAGATCAATACTATAAGGATAAATTCTCTTTGGAAGTTGGAGGTTATTGCAAGGATTAGAGTGAAAGTTCAGTTTAGCAACTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.04

Weight (kDa)

9.16

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 43, 202
AgsI TTSAA 2 cut(s) 76, 82
AluBI AGCT 3 cut(s) 60, 134, 163
AluI AGCT 3 cut(s) 60, 134, 163
Alw26I GTCTC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 43, 202
BbsI GAAGAC 1 cut(s) 3
BbvCI CCTCAGC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 2 cut(s) 17, 99
BglII AGATCT 1 cut(s) 143
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BpiI GAAGAC 1 cut(s) 3
Bpu10I CCTNAGC 1 cut(s) 159
BseMII CTCAG 2 cut(s) 138, 173
BseRI GAGGAG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 143, 183
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 139, 172
BspMAI CTGCAG 1 cut(s) 21
BssMI GATC 2 cut(s) 143, 183
Bst4CI ACNGT 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 147, 159
BstKTI GATC 2 cut(s) 146, 186
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 2 cut(s) 143, 183
BstMWI GCNNNNNNNGC 2 cut(s) 131, 169
BstSFI CTRYAG 2 cut(s) 17, 99
BstV2I GAAGAC 1 cut(s) 3
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
CviJI RGCY 3 cut(s) 60, 134, 163
CviKI_1 RGCY 3 cut(s) 60, 134, 163
DdeI CTNAG 2 cut(s) 147, 159
DpnI GATC 2 cut(s) 145, 185
DpnII GATC 2 cut(s) 143, 183
FaiI YATR 1 cut(s) 194
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 135
GluI GCNGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 19, 112, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 169
HpyF3I CTNAG 2 cut(s) 147, 159
Kzo9I GATC 2 cut(s) 143, 183
LpnPI CCDG 5 cut(s) 5, 87, 98, 149, 194
MaeI CTAG 1 cut(s) 135
MalI GATC 2 cut(s) 145, 185
MboI GATC 2 cut(s) 143, 183
MboII GAAGA 2 cut(s) 3, 153
MflI RGATCY 1 cut(s) 143
MluCI AATT 2 cut(s) 43, 202
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 99, 168, 214
MseI TTAA 1 cut(s) 265
MspA1I CMGCKG 2 cut(s) 125, 163
MwoI GCNNNNNNNGC 2 cut(s) 131, 169
NdeII GATC 2 cut(s) 143, 183
PkrI GCNGC 1 cut(s) 127
PstI CTGCAG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 163
SaqAI TTAA 1 cut(s) 265
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 2 cut(s) 143, 183
SetI ASST 5 cut(s) 62, 110, 136, 165, 225
SfcI CTRYAG 2 cut(s) 17, 99
Sse9I AATT 2 cut(s) 43, 202
SsiI CCGC 1 cut(s) 125
SspMI CTAG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 86
TasI AATT 2 cut(s) 43, 202
TauI GCSGC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 265
Tru9I TTAA 1 cut(s) 265
TscAI CASTG 1 cut(s) 21
TspRI CASTG 1 cut(s) 21
XapI RAATTY 2 cut(s) 43, 202
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.