Rh6CG294400

Peroxisomal 2,4-dienoyl-CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018163
Physical Location & Seq
Forward (+)
47233756 .. 47234196
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG294400.1

Sequence Viewer

Length: 243 bp
ATGGAATCACCGTTTAAGGCGGATGCGTTGAAAGGGAAGGTGGCTTTGATAACGGGAGGCAGGTCGGGTATTGGGTTTGAGATTTCGACCCAGTTCGGGAAACATGGAGCGTCTATTGCAATTATGGGGAGGAAGAGGCAAGTGTTGGACTCTGCTGTGTCTGCTCTCCGTCTTTTAGGATTCCGGTGTGCGAGTAGTTTTAACCTGGGGATGGAGGAGGAAAATATTATGTCAATGGACTGA

Protein Analysis

80

Amino Acids

8.54

Weight (kDa)

9.03

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 60 1.2e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 51
AciI CCGC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 96, 211
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 204
BccI CCATC 1 cut(s) 205
BciT130I CCWGG 1 cut(s) 206
BfuAI ACCTGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 85
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 205
BsaWI WCCGGW 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 211
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 28, 216
BseLI CCNNNNNNNGG 2 cut(s) 96, 211
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 2 cut(s) 96, 211
BspACI CCGC 1 cut(s) 20
BspMI ACCTGC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 28, 216
BstMWI GCNNNNNNNGC 2 cut(s) 116, 161
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BtsCI GGATG 2 cut(s) 28, 216
BveI ACCTGC 1 cut(s) 51
CseI GACGC 1 cut(s) 99
CviAII CATG 1 cut(s) 104
CviJI RGCY 1 cut(s) 44
CviKI_1 RGCY 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 107
FaiI YATR 3 cut(s) 105, 125, 230
FatI CATG 1 cut(s) 103
FokI GGATG 2 cut(s) 35, 223
HapII CCGG 1 cut(s) 184
HgaI GACGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 107
HinfI GANTC 3 cut(s) 5, 149, 180
HpaII CCGG 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 161
Hsp92II CATG 1 cut(s) 107
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 46, 104, 191, 197, 218
LweI GCATC 1 cut(s) 13
MboII GAAGA 1 cut(s) 145
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 5 cut(s) 50, 123, 129, 208, 211
MseI TTAA 2 cut(s) 15, 201
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 116, 161
NlaIII CATG 1 cut(s) 107
PfeI GAWTC 2 cut(s) 5, 180
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 204
PspGI CCWGG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 15, 201
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 206
SetI ASST 3 cut(s) 42, 65, 207
SfaNI GCATC 1 cut(s) 13
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 20
SspI AATATT 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 86
TasI AATT 1 cut(s) 120
TfiI GAWTC 2 cut(s) 5, 180
Tru1I TTAA 2 cut(s) 15, 201
Tru9I TTAA 2 cut(s) 15, 201
TspGWI ACGGA 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.