Rh3CG072000

Peroxisomal 2,4-dienoyl-CoA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018163
Physical Location & Seq
Forward (+)
5327772 .. 5330064
2293 bp
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UTR
Exon/CDS
Intron
Rh3CG072000.1

Sequence Viewer

Length: 240 bp
ATGGAATCACCGTTTAAGGCGGATGCGTTGAAAGGGAAGGTGGCTTTGATAACGGGAGGTGGGTCGGGTACTGGGTTTGAGATTTCGACCCAGTTCGAGAAACATGGAGCGTCTATTGCTATTATGGGGAGGAGGAGACAAGTGCTAGACTCTGCTTCTGCTGTATGCCAAGCCTCATCGTCCCTGAATGTGATGATTGAGAACATTGACAAAGTGTTGGAGGGAGTCATTGCTGTGTGA

Protein Analysis

79

Amino Acids

8.2

Weight (kDa)

6.54

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 59 6.5e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AfaI GTAC 1 cut(s) 70
AgsI TTSAA 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 146
BmrI ACTGGG 2 cut(s) 81, 85
BmsI GCATC 1 cut(s) 13
BmuI ACTGGG 2 cut(s) 81, 85
Bse1I ACTGG 2 cut(s) 76, 91
Bse3DI GCAATG 1 cut(s) 228
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 228
BseNI ACTGG 2 cut(s) 76, 91
BseRI GAGGAG 2 cut(s) 145, 148
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 166
BspACI CCGC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 228
BsrI ACTGG 2 cut(s) 76, 91
Bst4CI ACNGT 1 cut(s) 12
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 130
BstMWI GCNNNNNNNGC 1 cut(s) 116
BtsCI GGATG 1 cut(s) 28
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 69
CviAII CATG 1 cut(s) 104
CviJI RGCY 2 cut(s) 44, 173
CviKI_1 RGCY 2 cut(s) 44, 173
CviQI GTAC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 35
FaeI CATG 1 cut(s) 107
FaiI YATR 3 cut(s) 105, 125, 166
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 103
FokI GGATG 1 cut(s) 35
FspBI CTAG 1 cut(s) 146
HgaI GACGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 107
HinfI GANTC 3 cut(s) 5, 149, 225
Hpy188III TCNNGA 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 107
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 3 cut(s) 57, 104, 197
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 146
MlyI GAGTC 2 cut(s) 143, 234
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 50, 123, 126, 184, 214
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 116
NlaIII CATG 1 cut(s) 107
PfeI GAWTC 1 cut(s) 5
PleI GAGTC 2 cut(s) 143, 233
PpsI GAGTC 2 cut(s) 143, 233
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 1 cut(s) 15
SchI GAGTC 2 cut(s) 143, 234
SetI ASST 2 cut(s) 42, 61
SfaNI GCATC 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 233
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 86, 96
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.