Rmu_sc0001706.1_g000037

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001706.1
OG0018537
Physical Location & Seq
Forward (+)
155357 .. 157933
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001706.1_g000037.1.cds

Sequence Viewer

Length: 594 bp
atgagcaagccttcccatagagtactgcttacgaagcttgttttatccctcaactttcttttttggcagcttgggtctgaactcaaattccaggctagaggttatgtagttctcccagtactcccagtactcccagctgatgaagtggatactctcacaaccgtgatacacaagttggatgtaaagccagcgccagttataactaatacattttgcgggcggagtagtgtctccgctatgacaatcggttgtacttgtgaccgcgagaacaaggtttgccgtatcacaaacatttccatgcatggcattggtttaacttcagttataccagaagaagtgggtgatcttcggaacctgtcattgctctctgagcagcaagatcggcggagatttctgggtttcgacccttcgaaggagagggcggagaggcggagccttcgaggcctcgagccctcgagggaaagagagatgggctgtgcaagatcggcggagatttctgggtttcgagccttcgaaggagagggtggagaggcggagccttcgaggcctcgagggaaagagtggctgagagtggctgagtgggaactggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8

Protein Analysis

197

Amino Acids

22.1

Weight (kDa)

7.66

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018537)

Species Orthologous Gene IDs
pyrus_communis pycom10g28390
rosa_multiflora Rmu_sc0000060.1_g000053 Rmu_sc0001706.1_g000037
rosa_roxburghii Rroxscaffold_1G00075220
rosa_samantha Rh1AG032700 Rh1CG031100 Rh1DG038400 Rh1DG095500 Rh6BG326800 Rh6CG415600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AbsI CCTCGAGG 2 cut(s) 454, 549
AccII CGCG 1 cut(s) 264
AciI CCGC 9 cut(s) 216, 220, 234, 262, 385, 422, 430, 488, 533
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 303
AfaI GTAC 4 cut(s) 24, 120, 129, 253
AfiI CCNNNNNNNGG 1 cut(s) 412
AjnI CCWGG 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 161
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 37, 70, 137
AluI AGCT 3 cut(s) 37, 70, 137
Alw26I GTCTC 1 cut(s) 235
Ama87I CYCGRG 3 cut(s) 446, 454, 549
AoxI GGCC 2 cut(s) 442, 545
ApeKI GCWGC 2 cut(s) 67, 373
ApoI RAATTY 1 cut(s) 86
AspLEI GCGC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 353
AsuII TTCGAA 2 cut(s) 410, 513
AvaI CYCGRG 3 cut(s) 446, 454, 549
BaeI ACNNNNGTAYC 2 cut(s) 158, 191
BanII GRGCYC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 79, 385
BccI CCATC 1 cut(s) 463
BceAI ACGGC 1 cut(s) 264
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 235
BfaI CTAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 194
BfuI GTATCC 1 cut(s) 142
BglI GCCNNNNNGGC 2 cut(s) 441, 544
BisI GCNGC 2 cut(s) 68, 374
BlsI GCNGC 2 cut(s) 69, 375
BmcAI AGTACT 3 cut(s) 24, 120, 129
Bme1390I CCNGG 1 cut(s) 92
BmeT110I CYCGRG 3 cut(s) 446, 454, 549
BmiI GGNNCC 3 cut(s) 353, 434, 537
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 2 cut(s) 110, 119
BmuI ACTGGG 2 cut(s) 110, 119
Bpu14I TTCGAA 2 cut(s) 410, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse1I ACTGG 4 cut(s) 116, 125, 194, 591
Bse3DI GCAATG 1 cut(s) 359
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 3 cut(s) 360, 557, 567
BseNI ACTGG 4 cut(s) 116, 125, 194, 591
BseXI GCAGC 2 cut(s) 79, 385
BseYI CCCAGC 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 444, 547
BsiHKCI CYCGRG 3 cut(s) 446, 454, 549
BslI CCNNNNNNNGG 1 cut(s) 412
BsmAI GTCTC 1 cut(s) 235
BsnI GGCC 2 cut(s) 444, 547
BsoBI CYCGRG 3 cut(s) 446, 454, 549
Bsp119I TTCGAA 2 cut(s) 410, 513
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 3 cut(s) 343, 379, 482
BspACI CCGC 9 cut(s) 216, 220, 234, 262, 385, 422, 430, 488, 533
BspANI GGCC 2 cut(s) 444, 547
BspCNI CTCAG 3 cut(s) 361, 558, 568
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 3 cut(s) 353, 434, 537
BspT104I TTCGAA 2 cut(s) 410, 513
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 4 cut(s) 116, 125, 194, 591
BssMI GATC 3 cut(s) 343, 379, 482
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 163
BstBI TTCGAA 2 cut(s) 410, 513
BstC8I GCNNGC 3 cut(s) 8, 189, 218
BstDEI CTNAG 3 cut(s) 369, 566, 576
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 3 cut(s) 346, 382, 485
BstMAI GTCTC 1 cut(s) 235
BstMBI GATC 3 cut(s) 343, 379, 482
BstMWI GCNNNNNNNGC 6 cut(s) 34, 370, 382, 441, 485, 544
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 79, 385
BsuI GTATCC 1 cut(s) 142
BsuRI GGCC 2 cut(s) 444, 547
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 3 cut(s) 8, 189, 218
CfoI GCGC 1 cut(s) 193
Csp6I GTAC 4 cut(s) 23, 119, 128, 252
CviAII CATG 2 cut(s) 298, 302
CviQI GTAC 4 cut(s) 23, 119, 128, 252
DdeI CTNAG 3 cut(s) 369, 566, 576
DpnI GATC 3 cut(s) 345, 381, 484
DpnII GATC 3 cut(s) 343, 379, 482
EciI GGCGGA 6 cut(s) 235, 400, 437, 445, 503, 548
Eco147I AGGCCT 2 cut(s) 444, 547
Eco24I GRGCYC 1 cut(s) 453
Eco57I CTGAAG 1 cut(s) 303
Eco88I CYCGRG 3 cut(s) 446, 454, 549
EcoRII CCWGG 1 cut(s) 90
EcoT22I ATGCAT 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 453
FaeI CATG 2 cut(s) 301, 305
FaiI YATR 7 cut(s) 18, 105, 200, 239, 299, 303, 326
FatI CATG 2 cut(s) 297, 301
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 2 cut(s) 68, 374
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 2 cut(s) 68, 374
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 68, 374
GsaI CCCAGC 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 444, 547
HhaI GCGC 1 cut(s) 193
Hin1II CATG 2 cut(s) 301, 305
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HindIII AAGCTT 1 cut(s) 35
HphI GGTGA 1 cut(s) 353
Hpy188I TCNGA 3 cut(s) 79, 351, 370
HpyAV CCTTC 7 cut(s) 21, 406, 417, 446, 509, 520, 549
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 2 cut(s) 301, 479
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 370, 382, 441, 485, 544
HpyF3I CTNAG 3 cut(s) 369, 566, 576
Hsp92II CATG 2 cut(s) 301, 305
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 3 cut(s) 343, 379, 482
LmnI GCTCC 2 cut(s) 432, 535
Lsp1109I GCAGC 2 cut(s) 79, 385
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 257
MalI GATC 3 cut(s) 345, 381, 484
MboI GATC 3 cut(s) 343, 379, 482
MboII GAAGA 2 cut(s) 338, 344
MhlI GDGCHC 1 cut(s) 453
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 156
Mph1103I ATGCAT 1 cut(s) 303
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 2 cut(s) 161, 296
MspA1I CMGCKG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 6 cut(s) 34, 370, 382, 441, 485, 544
NdeII GATC 3 cut(s) 343, 379, 482
NlaIII CATG 2 cut(s) 301, 305
NlaIV GGNNCC 3 cut(s) 353, 434, 537
NmuCI GTSAC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 303
NspV TTCGAA 2 cut(s) 410, 513
OliI CACNNNNGTG 1 cut(s) 161
PaeR7I CTCGAG 3 cut(s) 446, 454, 549
PceI AGGCCT 2 cut(s) 444, 547
PkrI GCNGC 2 cut(s) 69, 375
PsiI TTATAA 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 133
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 3 cut(s) 353, 434, 537
PspXI VCTCGAGB 3 cut(s) 446, 454, 549
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 4 cut(s) 24, 120, 129, 253
RsaNI GTAC 4 cut(s) 23, 119, 128, 252
RseI CAYNNNNRTG 2 cut(s) 161, 296
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 2 cut(s) 68, 374
Sau3AI GATC 3 cut(s) 343, 379, 482
ScaI AGTACT 3 cut(s) 24, 120, 129
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 453
SetI ASST 6 cut(s) 39, 72, 103, 139, 276, 357
Sfr274I CTCGAG 3 cut(s) 446, 454, 549
SfuI TTCGAA 2 cut(s) 410, 513
SlaI CTCGAG 3 cut(s) 446, 454, 549
SmiMI CAYNNNNRTG 2 cut(s) 161, 296
SmlI CTYRAG 3 cut(s) 446, 454, 549
SmoI CTYRAG 3 cut(s) 446, 454, 549
Sse9I AATT 1 cut(s) 86
SseBI AGGCCT 2 cut(s) 444, 547
SsiI CCGC 9 cut(s) 216, 220, 234, 262, 385, 422, 430, 488, 533
SspMI CTAG 1 cut(s) 96
StuI AGGCCT 2 cut(s) 444, 547
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 9 cut(s) 402, 410, 439, 447, 455, 505, 513, 542, 550
TasI AATT 1 cut(s) 86
TatI WGTACW 4 cut(s) 22, 118, 127, 251
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 67, 373
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 156
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 3 cut(s) 446, 454, 549
XspI CTAG 1 cut(s) 96
ZrmI AGTACT 3 cut(s) 24, 120, 129
Zsp2I ATGCAT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.