Rh1DG038400

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018537
Physical Location & Seq
Reverse (-)
6123516 .. 6127512
3997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG038400.1

Sequence Viewer

Length: 1131 bp
ATGGCTGGCGTAGTGGGTGGAGCTTTCCTCTCTGCTTCCCTTCAGGTCTTGTTCGATAGATTGGCTTCTCGTCAAGTCGTTGACTTCATCCGCGGCAACAAGCTCAACGCTGGACTTCTCAGGAAGCTAGAAATCACTCTGCTTTCTGTCAATTCCGTGCTCAGTGATGCCGAGGACAAGCAGATAACCAATCATGCTGTGAAAGAATGGCTTGATGAGCTTAGAGCTGCTGTCTATGATGCCGAGGACCTCATGGCTGACTTCAGCTCTGAAGCTTTGGAGAAAGAGCTTCAAGAGGAATCTGAATCCGGAAGCAGCGGCGGAATTCAGGTAAAAGATGTCAAATTGTATTTAATGAATGCATTGGATGAATGGTTGGAGCCCAAGATAGAGGAAGTTGTTGAAAGACTAGAATTTATTGCTAAGAAGAAGTATGTTCTTGGATTGAAAGAGGGTATTAAAGATGTTGCAGTAAGAAGATTGCCTGCAACTTCTTTGGTGGAGGAGTCTAGTGTGTATGGTAGGGATGAGGACAGAGAGGTCATTGTGAGGTTGTTGCTTTCAGATGGAGGATTACCCGACTATCTTCCATCTCTGACAACACTATGGATTTTCAAATGCCAGCAGCTGGTGGCCTCCCTTCCAAGGGCTCCATCTATCCGTGATTTGAAGTTTGGATATTGTGATGGGTTGCAGTTAAAAGAATTGCCTTCTGAACTGCACTGGCTCAGAATTGAAGGATGCCATGTCCTGGAGTCTATACCTGGTCATGTGAAGGAAACAAATCCTTGTCTTCAGGAGTTATTTATCTCTGACTGTTCTTCTCTGGTGTCCTTTCCTAAGGATGGATTACCTGCTACACTGAAAGCCATTGAAATCGAGAACTGTGGGAGGTTAGAGATACCTGTTGACCACTACTATGCTTCCCTTGAAAGCTTGGCCATATGGAGTAGTTGCGATTCTTTAGAGTCCTTTCCATTGGAACTGTTCCCAAACTTGAACAATCTCAAAATTCGGAGCTGCAAAGGATCTCTTACATTTCGTTTACTTTCAGTTTCTGTGTACTTAACCATGACAATGCTGGAAGCTATTCTGGTTTCAAGCTCAAAGAGATATGCTATAGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

376

Amino Acids

41.9

Weight (kDa)

4.92

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 99 3.3e-18 Rx N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018537)

Species Orthologous Gene IDs
pyrus_communis pycom10g28390
rosa_multiflora Rmu_sc0000060.1_g000053 Rmu_sc0001706.1_g000037
rosa_roxburghii Rroxscaffold_1G00075220
rosa_samantha Rh1AG032700 Rh1CG031100 Rh1DG038400 Rh1DG095500 Rh6BG326800 Rh6CG415600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 539
Acc36I ACCTGC 1 cut(s) 862
AccB7I CCANNNNNTGG 2 cut(s) 628, 751
AccII CGCG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 308
AciI CCGC 4 cut(s) 91, 93, 318, 321
AclWI GGATC 1 cut(s) 1036
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 3 cut(s) 324, 413, 1011
AcuI CTGAAG 4 cut(s) 26, 247, 291, 779
AfaI GTAC 1 cut(s) 1064
AfiI CCNNNNNNNGG 5 cut(s) 628, 645, 646, 751, 845
AjnI CCWGG 2 cut(s) 750, 763
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 1 cut(s) 1036
AlwNI CAGNNNCTG 2 cut(s) 628, 1058
Aor13HI TCCGGA 1 cut(s) 308
AoxI GGCC 2 cut(s) 633, 939
ApeKI GCWGC 4 cut(s) 227, 315, 625, 1020
ApoI RAATTY 3 cut(s) 324, 413, 1011
Asp700I GAANNNNTTC 1 cut(s) 1089
AspS9I GGNCC 1 cut(s) 247
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 840
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 2 cut(s) 384, 652
BbsI GAAGAC 1 cut(s) 785
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 214, 327, 637, 1007
BccI CCATC 5 cut(s) 560, 598, 661, 680, 839
BciT130I CCWGG 2 cut(s) 752, 765
BfaI CTAG 3 cut(s) 128, 410, 510
BfmI CTRYAG 1 cut(s) 1119
BfuAI ACCTGC 1 cut(s) 862
BisI GCNGC 6 cut(s) 94, 228, 316, 319, 626, 1021
BlsI GCNGC 6 cut(s) 95, 229, 317, 320, 627, 1022
Bme1390I CCNGG 2 cut(s) 752, 765
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 381, 651
BmrFI CCNGG 2 cut(s) 752, 765
BmsI GCATC 3 cut(s) 157, 229, 731
BpiI GAAGAC 1 cut(s) 785
BplI GAGNNNNNCTC 2 cut(s) 12, 44
BpmI CTGGAG 1 cut(s) 773
BsaJI CCNNGG 4 cut(s) 91, 171, 243, 644
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 5 cut(s) 628, 645, 646, 751, 845
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 1 cut(s) 840
BseAI TCCGGA 1 cut(s) 308
BseBI CCWGG 2 cut(s) 752, 765
BseDI CCNNGG 4 cut(s) 91, 171, 243, 644
BseGI GGATG 5 cut(s) 87, 373, 532, 746, 850
BseLI CCNNNNNNNGG 5 cut(s) 628, 645, 646, 751, 845
BseMII CTCAG 3 cut(s) 133, 175, 742
BseNI ACTGG 1 cut(s) 728
BseRI GAGGAG 1 cut(s) 518
BseXI GCAGC 4 cut(s) 214, 327, 637, 1007
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 635, 941
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 5 cut(s) 628, 645, 646, 751, 845
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 2 cut(s) 635, 941
Bsp1286I GDGCHC 3 cut(s) 162, 384, 652
Bsp13I TCCGGA 1 cut(s) 308
Bsp143I GATC 1 cut(s) 1028
BspACI CCGC 4 cut(s) 91, 93, 318, 321
BspANI GGCC 2 cut(s) 635, 941
BspCNI CTCAG 3 cut(s) 132, 174, 741
BspEI TCCGGA 1 cut(s) 308
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 381, 651
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 728
BssECI CCNNGG 4 cut(s) 91, 171, 243, 644
BssMI GATC 1 cut(s) 1028
BssT1I CCWWGG 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 752, 765
Bst4CI ACNGT 3 cut(s) 818, 887, 987
BstC8I GCNNGC 3 cut(s) 7, 486, 623
BstDEI CTNAG 6 cut(s) 119, 161, 221, 423, 728, 840
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 5 cut(s) 87, 373, 532, 746, 850
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 1031
BstMBI GATC 1 cut(s) 1028
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 752, 765
BstSCI CCNGG 2 cut(s) 750, 763
BstSFI CTRYAG 1 cut(s) 1119
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 4 cut(s) 214, 327, 637, 1007
BstV2I GAAGAC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 1028
BstYI RGATCY 1 cut(s) 1028
Bsu36I CCTNAGG 1 cut(s) 840
BsuRI GGCC 2 cut(s) 635, 941
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 5 cut(s) 87, 373, 532, 746, 850
BtsIMutI CAGTG 3 cut(s) 169, 721, 860
BveI ACCTGC 1 cut(s) 862
Cac8I GCNNGC 3 cut(s) 7, 486, 623
CaiI CAGNNNCTG 2 cut(s) 628, 1058
Cfr13I GGNCC 1 cut(s) 247
Cfr42I CCGCGG 1 cut(s) 94
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 1 cut(s) 1063
CviAII CATG 5 cut(s) 194, 253, 746, 770, 1072
CviQI GTAC 1 cut(s) 1063
DdeI CTNAG 6 cut(s) 119, 161, 221, 423, 728, 840
DpnI GATC 1 cut(s) 1030
DpnII GATC 1 cut(s) 1028
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 939
EciI GGCGGA 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 644
Eco24I GRGCYC 2 cut(s) 384, 652
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 4 cut(s) 26, 247, 291, 779
Eco81I CCTNAGG 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 750, 763
EcoT14I CCWWGG 1 cut(s) 644
EcoT22I ATGCAT 1 cut(s) 364
EcoT38I GRGCYC 2 cut(s) 384, 652
ErhI CCWWGG 1 cut(s) 644
FaeI CATG 5 cut(s) 197, 256, 749, 773, 1075
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 1017, 1049
FatI CATG 5 cut(s) 193, 252, 745, 769, 1071
FauNDI CATATG 1 cut(s) 944
Fnu4HI GCNGC 6 cut(s) 94, 228, 316, 319, 626, 1021
FokI GGATG 5 cut(s) 74, 380, 539, 753, 857
FriOI GRGCYC 2 cut(s) 384, 652
Fsp4HI GCNGC 6 cut(s) 94, 228, 316, 319, 626, 1021
FspBI CTAG 3 cut(s) 128, 410, 510
GluI GCNGC 6 cut(s) 94, 228, 316, 319, 626, 1021
GsuI CTGGAG 1 cut(s) 773
HaeIII GGCC 2 cut(s) 635, 941
HapII CCGG 1 cut(s) 309
Hin1II CATG 5 cut(s) 197, 256, 749, 773, 1075
HincII GTYRAC 2 cut(s) 82, 910
HindII GTYRAC 2 cut(s) 82, 910
HindIII AAGCTT 2 cut(s) 273, 934
HinfI GANTC 6 cut(s) 299, 305, 506, 755, 959, 968
HpaII CCGG 1 cut(s) 309
Hpy166II GTNNAC 4 cut(s) 82, 910, 1046, 1063
Hpy188I TCNGA 8 cut(s) 271, 304, 565, 597, 715, 731, 814, 1017
Hpy188III TCNNGA 5 cut(s) 121, 293, 309, 797, 880
Hpy8I GTNNAC 4 cut(s) 82, 910, 1046, 1063
HpyAV CCTTC 5 cut(s) 50, 650, 720, 731, 769
HpyCH4III ACNGT 3 cut(s) 818, 887, 987
HpyCH4V TGCA 6 cut(s) 362, 470, 488, 694, 721, 1023
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 6 cut(s) 119, 161, 221, 423, 728, 840
Hsp92II CATG 5 cut(s) 197, 256, 749, 773, 1075
Kpn2I TCCGGA 1 cut(s) 308
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 1028
LmnI GCTCC 4 cut(s) 20, 379, 655, 1017
Lsp1109I GCAGC 4 cut(s) 214, 327, 637, 1007
LweI GCATC 3 cut(s) 157, 229, 731
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 3 cut(s) 128, 410, 510
MalI GATC 1 cut(s) 1030
MboI GATC 1 cut(s) 1028
MboII GAAGA 5 cut(s) 439, 489, 578, 785, 813
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 3 cut(s) 162, 384, 652
MlsI TGGCCA 1 cut(s) 941
MluCI AATT 7 cut(s) 151, 324, 344, 413, 704, 732, 1011
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 3 cut(s) 515, 764, 977
MmeI TCCRAC 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 941
Mph1103I ATGCAT 1 cut(s) 364
MroI TCCGGA 1 cut(s) 308
MroXI GAANNNNTTC 1 cut(s) 1089
MscI TGGCCA 1 cut(s) 941
MseI TTAA 4 cut(s) 353, 459, 698, 1067
MslI CAYNNNNRTG 2 cut(s) 918, 1076
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 3 cut(s) 93, 318, 628
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 752, 765
Mva1269I GAATGC 1 cut(s) 364
MvaI CCWGG 2 cut(s) 752, 765
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeI CATATG 1 cut(s) 944
NdeII GATC 1 cut(s) 1028
NlaIII CATG 5 cut(s) 197, 256, 749, 773, 1075
NlaIV GGNNCC 2 cut(s) 381, 651
NmeAIII GCCGAG 2 cut(s) 196, 268
NsiI ATGCAT 1 cut(s) 364
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 3 cut(s) 299, 305, 959
PflMI CCANNNNNTGG 2 cut(s) 628, 751
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 6 cut(s) 95, 229, 317, 320, 627, 1022
PleI GAGTC 3 cut(s) 514, 763, 976
PpsI GAGTC 3 cut(s) 514, 763, 976
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 750, 763
PspGI CCWGG 2 cut(s) 750, 763
PspN4I GGNNCC 2 cut(s) 381, 651
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 2 cut(s) 628, 1058
PsuI RGATCY 1 cut(s) 1028
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 1 cut(s) 1064
RsaNI GTAC 1 cut(s) 1063
RseI CAYNNNNRTG 2 cut(s) 918, 1076
SacII CCGCGG 1 cut(s) 94
SaqAI TTAA 4 cut(s) 353, 459, 698, 1067
SatI GCNGC 6 cut(s) 94, 228, 316, 319, 626, 1021
Sau3AI GATC 1 cut(s) 1028
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 3 cut(s) 515, 764, 977
ScrFI CCNGG 2 cut(s) 752, 765
SduI GDGCHC 3 cut(s) 162, 384, 652
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 3 cut(s) 157, 229, 731
SfcI CTRYAG 1 cut(s) 1119
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 1 cut(s) 247
SmiMI CAYNNNNRTG 2 cut(s) 918, 1076
Sse9I AATT 7 cut(s) 151, 324, 344, 413, 704, 732, 1011
SsiI CCGC 4 cut(s) 91, 93, 318, 321
SspMI CTAG 3 cut(s) 128, 410, 510
StyD4I CCNGG 2 cut(s) 750, 763
StyI CCWWGG 1 cut(s) 644
TaaI ACNGT 3 cut(s) 818, 887, 987
TaqI TCGA 2 cut(s) 54, 879
TasI AATT 7 cut(s) 151, 324, 344, 413, 704, 732, 1011
TatI WGTACW 1 cut(s) 1062
TauI GCSGC 2 cut(s) 96, 321
TfiI GAWTC 3 cut(s) 299, 305, 959
Tru1I TTAA 4 cut(s) 353, 459, 698, 1067
Tru9I TTAA 4 cut(s) 353, 459, 698, 1067
TscAI CASTG 3 cut(s) 169, 728, 867
TseI GCWGC 4 cut(s) 227, 315, 625, 1020
TspDTI ATGAA 3 cut(s) 76, 371, 384
TspGWI ACGGA 2 cut(s) 145, 650
TspRI CASTG 3 cut(s) 169, 728, 867
Van91I CCANNNNNTGG 2 cut(s) 628, 751
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 3 cut(s) 324, 413, 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 1078
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 3 cut(s) 128, 410, 510
Zsp2I ATGCAT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.