Rh1AG032700

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0018537
Physical Location & Seq
Forward (+)
5839159 .. 5869790
30632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG032700.1

Sequence Viewer

Length: 1074 bp
ATGGGCTGTGCAAGATCGGCGGAGATTGCTGGGTTTCGAGCCTTCGAAGGAGAGGGCGGAGAGGCGGAGCCTTCGAGGCCTCGAGCCCTCGAGGGAAAGAGAGATGGGCTGTGCAAGATCGGCGGAGATTTCTGGGTTTCGAGCCTTCGAAGGAGAGGGTGGAGAGGCGGAGCCTTCGAGGCCTCGAGGGAAAGGGAGATGGGCTGTGCAAGATCGGCGGAGATTGCTGGGTTTCGAGCCTTCGAAGGAGAGGGCGGAGAGGCGGAGCCTTCGAGGCCTCGAGCCCTCGAGGGAAAGAGAGATGGGCTGTGCAAGATCGGCGGAGATTTCTGGGTTTCGAGCCTTCGAAGGAGAGGGCGGAGAGGCGGAGCCTTCGAGGCCTCGAGGGAAAGAGTGGCTGAGATAAATAAGCCGTTTAAATCCCTAGAAATTTTGAAGTTAGAGGATATGTTTGAGTGGCAGGAGTGGTCCTGTTTTGGAGGTGACAATGTTGGTGGTGCTTTCCCTTGCCTTCAGGAGCTTTATCTACAACGTTGTCCCAAACTAACAGGAGGGTTACCCGACTATCTTCCATCTCTGACAACACTATGGATTTTCAAATGCCAGCAGCTGGTGGCCTCCCTTCCAAGGGCTCCATCTATCCGTGATTTGAAGTTTGGATATTGTGATGGGTTGCAGTTAAAAGAATTGCCTTCTGAACTGCACTGGCTCAGAATTGAAGGATGCCATGTCCTGGAGTCTATACCTGGTCATGTGAAGGAAACAAATCCTTGTCTTCAGGAGTTATTTATCTCTGACTGTTCTTCTCTGGTGTCATTTCCTAAGGATGGATTACCTGCTACACTGAAAGCCATTGAAATTGAGAACTGTGGGAGGTTAGAGATACCTGTTGACCACTACTATGCTTCCCTTGAAAGCTTGGCCATATGGAGTAGTTGCGATTCTTTAGAGTCCTTTCCATTGGAACTGTTCCCAAACTTGAACAATCTCAAAATTCGGAGCTGCAAAGTATTTGGAATATTAGAAGTGAGCAAGTCAGGAGTTAACATGACTTTTGCTTCTGCATATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

357

Amino Acids

39.63

Weight (kDa)

6.0

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018537)

Species Orthologous Gene IDs
pyrus_communis pycom10g28390
rosa_multiflora Rmu_sc0000060.1_g000053 Rmu_sc0001706.1_g000037
rosa_roxburghii Rroxscaffold_1G00075220
rosa_samantha Rh1AG032700 Rh1CG031100 Rh1DG038400 Rh1DG095500 Rh6BG326800 Rh6CG415600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 4 cut(s) 89, 184, 287, 382
Acc36I ACCTGC 1 cut(s) 844
AccB7I CCANNNNNTGG 2 cut(s) 610, 733
AclI AACGTT 1 cut(s) 532
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 2 cut(s) 429, 993
AcuI CTGAAG 2 cut(s) 497, 761
AfiI CCNNNNNNNGG 5 cut(s) 610, 627, 628, 733, 827
AgsI TTSAA 7 cut(s) 436, 598, 652, 719, 857, 914, 982
AjnI CCWGG 2 cut(s) 732, 745
AluBI AGCT 4 cut(s) 520, 610, 918, 1002
AluI AGCT 4 cut(s) 520, 610, 918, 1002
AlwNI CAGNNNCTG 1 cut(s) 610
Ama87I CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
AoxI GGCC 6 cut(s) 77, 180, 275, 378, 615, 921
ApeKI GCWGC 2 cut(s) 607, 1002
ApoI RAATTY 2 cut(s) 429, 993
AspS9I GGNCC 1 cut(s) 468
AsuHPI GGTGA 1 cut(s) 494
AsuII TTCGAA 4 cut(s) 45, 148, 243, 346
AvaI CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
AvaII GGWCC 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 822
BalI TGGCCA 1 cut(s) 923
BanII GRGCYC 3 cut(s) 88, 286, 634
BbsI GAAGAC 1 cut(s) 767
BbvI GCAGC 2 cut(s) 619, 989
BccI CCATC 7 cut(s) 98, 193, 296, 580, 643, 662, 821
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 734, 747
BfaI CTAG 1 cut(s) 425
BfuAI ACCTGC 1 cut(s) 844
BglI GCCNNNNNGGC 4 cut(s) 76, 179, 274, 377
BisI GCNGC 2 cut(s) 608, 1003
BlsI GCNGC 2 cut(s) 609, 1004
Bme1390I CCNGG 2 cut(s) 734, 747
Bme18I GGWCC 1 cut(s) 468
BmeT110I CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
BmgT120I GGNCC 1 cut(s) 468
BmiI GGNNCC 5 cut(s) 69, 172, 267, 370, 633
BmrFI CCNGG 2 cut(s) 734, 747
BmsI GCATC 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 767
BpmI CTGGAG 1 cut(s) 755
Bpu14I TTCGAA 4 cut(s) 45, 148, 243, 346
BsaJI CCNNGG 1 cut(s) 626
Bsc4I CCNNNNNNNGG 5 cut(s) 610, 627, 628, 733, 827
Bse1I ACTGG 1 cut(s) 710
Bse21I CCTNAGG 1 cut(s) 822
BseBI CCWGG 2 cut(s) 734, 747
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 2 cut(s) 728, 832
BseLI CCNNNNNNNGG 5 cut(s) 610, 627, 628, 733, 827
BseMII CTCAG 2 cut(s) 390, 724
BseNI ACTGG 1 cut(s) 710
BseXI GCAGC 2 cut(s) 619, 989
BseYI CCCAGC 2 cut(s) 29, 227
BsgI GTGCAG 1 cut(s) 686
BshFI GGCC 6 cut(s) 79, 182, 277, 380, 617, 923
BsiHKCI CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
BslFI GGGAC 1 cut(s) 522
BslI CCNNNNNNNGG 5 cut(s) 610, 627, 628, 733, 827
BsmFI GGGAC 1 cut(s) 522
BsnI GGCC 6 cut(s) 79, 182, 277, 380, 617, 923
BsoBI CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
Bsp119I TTCGAA 4 cut(s) 45, 148, 243, 346
Bsp1286I GDGCHC 3 cut(s) 88, 286, 634
Bsp143I GATC 4 cut(s) 14, 117, 212, 315
BspANI GGCC 6 cut(s) 79, 182, 277, 380, 617, 923
BspCNI CTCAG 2 cut(s) 391, 723
BspLI GGNNCC 5 cut(s) 69, 172, 267, 370, 633
BspMI ACCTGC 1 cut(s) 844
BspT104I TTCGAA 4 cut(s) 45, 148, 243, 346
BsrI ACTGG 1 cut(s) 710
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 4 cut(s) 14, 117, 212, 315
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 734, 747
Bst4CI ACNGT 3 cut(s) 800, 869, 969
BstBI TTCGAA 4 cut(s) 45, 148, 243, 346
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 399, 710, 822
BstEII GGTNACC 1 cut(s) 555
BstF5I GGATG 2 cut(s) 728, 832
BstKTI GATC 4 cut(s) 17, 120, 215, 318
BstMBI GATC 4 cut(s) 14, 117, 212, 315
BstNI CCWGG 2 cut(s) 734, 747
BstPI GGTNACC 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 732, 745
BstV1I GCAGC 2 cut(s) 619, 989
BstV2I GAAGAC 1 cut(s) 767
Bsu36I CCTNAGG 1 cut(s) 822
BsuRI GGCC 6 cut(s) 79, 182, 277, 380, 617, 923
BtsCI GGATG 2 cut(s) 728, 832
BtsIMutI CAGTG 2 cut(s) 703, 842
BveI ACCTGC 1 cut(s) 844
Cac8I GCNNGC 1 cut(s) 605
CaiI CAGNNNCTG 1 cut(s) 610
Cfr13I GGNCC 1 cut(s) 468
CsiI ACCWGGT 1 cut(s) 745
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 3 cut(s) 728, 752, 1048
DdeI CTNAG 3 cut(s) 399, 710, 822
DpnI GATC 4 cut(s) 16, 119, 214, 317
DpnII GATC 4 cut(s) 14, 117, 212, 315
DraI TTTAAA 1 cut(s) 418
EaeI YGGCCR 1 cut(s) 921
Eco130I CCWWGG 1 cut(s) 626
Eco147I AGGCCT 4 cut(s) 79, 182, 277, 380
Eco24I GRGCYC 3 cut(s) 88, 286, 634
Eco47I GGWCC 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 497, 761
Eco81I CCTNAGG 1 cut(s) 822
Eco88I CYCGRG 6 cut(s) 81, 89, 184, 279, 287, 382
Eco91I GGTNACC 1 cut(s) 555
EcoO65I GGTNACC 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 732, 745
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 3 cut(s) 88, 286, 634
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 3 cut(s) 731, 755, 1051
FaqI GGGAC 1 cut(s) 522
FatI CATG 3 cut(s) 727, 751, 1047
FauNDI CATATG 1 cut(s) 926
Fnu4HI GCNGC 2 cut(s) 608, 1003
FokI GGATG 2 cut(s) 735, 839
FriOI GRGCYC 3 cut(s) 88, 286, 634
Fsp4HI GCNGC 2 cut(s) 608, 1003
FspBI CTAG 1 cut(s) 425
GluI GCNGC 2 cut(s) 608, 1003
GsaI CCCAGC 2 cut(s) 33, 231
GsuI CTGGAG 1 cut(s) 755
HaeIII GGCC 6 cut(s) 79, 182, 277, 380, 617, 923
Hin1II CATG 3 cut(s) 731, 755, 1051
HincII GTYRAC 2 cut(s) 892, 1045
HindII GTYRAC 2 cut(s) 892, 1045
HindIII AAGCTT 1 cut(s) 916
HinfI GANTC 3 cut(s) 737, 941, 950
HpaI GTTAAC 1 cut(s) 1045
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 892, 1045
Hpy188I TCNGA 5 cut(s) 579, 697, 713, 796, 999
Hpy188III TCNNGA 3 cut(s) 515, 779, 1038
Hpy8I GTNNAC 2 cut(s) 892, 1045
HpyCH4III ACNGT 3 cut(s) 800, 869, 969
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 8 cut(s) 11, 114, 209, 312, 676, 703, 1005, 1064
HpyF3I CTNAG 3 cut(s) 399, 710, 822
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 3 cut(s) 731, 755, 1051
KspAI GTTAAC 1 cut(s) 1045
Kzo9I GATC 4 cut(s) 14, 117, 212, 315
LmnI GCTCC 7 cut(s) 67, 170, 265, 368, 517, 637, 999
Lsp1109I GCAGC 2 cut(s) 619, 989
LweI GCATC 1 cut(s) 713
MabI ACCWGGT 1 cut(s) 745
MaeI CTAG 1 cut(s) 425
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 2 cut(s) 482, 555
MalI GATC 4 cut(s) 16, 119, 214, 317
MboI GATC 4 cut(s) 14, 117, 212, 315
MboII GAAGA 3 cut(s) 560, 767, 795
MhlI GDGCHC 3 cut(s) 88, 286, 634
MlsI TGGCCA 1 cut(s) 923
MluCI AATT 5 cut(s) 429, 686, 714, 858, 993
MluNI TGGCCA 1 cut(s) 923
MlyI GAGTC 2 cut(s) 746, 959
Mox20I TGGCCA 1 cut(s) 923
MscI TGGCCA 1 cut(s) 923
MseI TTAA 4 cut(s) 417, 680, 1044, 1072
MslI CAYNNNNRTG 1 cut(s) 900
Msp20I TGGCCA 1 cut(s) 923
MspA1I CMGCKG 1 cut(s) 610
MspR9I CCNGG 2 cut(s) 734, 747
MvaI CCWGG 2 cut(s) 734, 747
NdeI CATATG 1 cut(s) 926
NdeII GATC 4 cut(s) 14, 117, 212, 315
NlaIII CATG 3 cut(s) 731, 755, 1051
NlaIV GGNNCC 5 cut(s) 69, 172, 267, 370, 633
NmuCI GTSAC 1 cut(s) 482
NspV TTCGAA 4 cut(s) 45, 148, 243, 346
PaeR7I CTCGAG 6 cut(s) 81, 89, 184, 279, 287, 382
PceI AGGCCT 4 cut(s) 79, 182, 277, 380
PfeI GAWTC 1 cut(s) 941
PflMI CCANNNNNTGG 2 cut(s) 610, 733
PfoI TCCNGGA 1 cut(s) 732
PkrI GCNGC 2 cut(s) 609, 1004
PleI GAGTC 2 cut(s) 745, 958
PpsI GAGTC 2 cut(s) 745, 958
Psp1406I AACGTT 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 732, 745
PspEI GGTNACC 1 cut(s) 555
PspFI CCCAGC 2 cut(s) 29, 227
PspGI CCWGG 2 cut(s) 732, 745
PspN4I GGNNCC 5 cut(s) 69, 172, 267, 370, 633
PspPI GGNCC 1 cut(s) 468
PspXI VCTCGAGB 6 cut(s) 81, 89, 184, 279, 287, 382
PstNI CAGNNNCTG 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 900
SaqAI TTAA 4 cut(s) 417, 680, 1044, 1072
SatI GCNGC 2 cut(s) 608, 1003
Sau3AI GATC 4 cut(s) 14, 117, 212, 315
Sau96I GGNCC 1 cut(s) 468
SchI GAGTC 2 cut(s) 746, 959
ScrFI CCNGG 2 cut(s) 734, 747
SduI GDGCHC 3 cut(s) 88, 286, 634
SexAI ACCWGGT 1 cut(s) 745
SfaNI GCATC 1 cut(s) 713
Sfr274I CTCGAG 6 cut(s) 81, 89, 184, 279, 287, 382
SfuI TTCGAA 4 cut(s) 45, 148, 243, 346
SinI GGWCC 1 cut(s) 468
SlaI CTCGAG 6 cut(s) 81, 89, 184, 279, 287, 382
SmiMI CAYNNNNRTG 1 cut(s) 900
SmlI CTYRAG 6 cut(s) 81, 89, 184, 279, 287, 382
SmoI CTYRAG 6 cut(s) 81, 89, 184, 279, 287, 382
Sse9I AATT 5 cut(s) 429, 686, 714, 858, 993
SseBI AGGCCT 4 cut(s) 79, 182, 277, 380
SspI AATATT 1 cut(s) 1020
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 4 cut(s) 79, 182, 277, 380
StyD4I CCNGG 2 cut(s) 732, 745
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 3 cut(s) 800, 869, 969
TaiI ACGT 1 cut(s) 535
TasI AATT 5 cut(s) 429, 686, 714, 858, 993
TfiI GAWTC 1 cut(s) 941
Tru1I TTAA 4 cut(s) 417, 680, 1044, 1072
Tru9I TTAA 4 cut(s) 417, 680, 1044, 1072
TscAI CASTG 2 cut(s) 710, 849
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 607, 1002
Tsp45I GTSAC 1 cut(s) 482
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 2 cut(s) 710, 849
Van91I CCANNNNNTGG 2 cut(s) 610, 733
VpaK11BI GGWCC 1 cut(s) 468
XapI RAATTY 2 cut(s) 429, 993
XhoI CTCGAG 6 cut(s) 81, 89, 184, 279, 287, 382
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.