Rmu_sc0001715.1_g000029

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001715.1
OG0017267
Physical Location & Seq
Forward (+)
93173 .. 96495
3323 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1620 bp
atggaggagctggtagatgatacttcaacatcacttgatgggaagaataaagtttttctcaatggggattgggttggcgtttgtgaagattccggtgattttgtcacgagactaaggacattgagacgcaggaaaaagttgctacagcagatggaaatcaaaagagatgagcagctctgggaagtacgaatatattctgatgctggaaggattctacgtcctttcctggtagttaagaatttgaataagattaaagcatccaagggaaaaaaacacacgttccaagatcttcttggcaatggaataatcgagctcattggagctgaagaagaagaggattgctgtacagcatgggacgtcaggcatctatttatggaagacaatgggaagtcagcagtcaagtacacacactgtgaactggacctgtcatttttgttaggcttaagttgtggtatcattcccttttcaaaccatgatcatggaaggagggttctataccagtctcagaagcactctcagcaggtcattggtttttctaccacaaatcctaaccacagagtggttactctgtctcaccaactatgctaccctcagaggccgcttttttgtaatatgatatctgattgccttggccaaccaggaaacccagtgagccataacagagttatgtccaagcctgaatactttaatggccaaaatgcaattgttgcattcaatgtgcacctaggatataaccaagaagattctattgtgatgaactgcgcatctgtgcaacgtggcatgttcaaatctgagcacatacggagctacaaggctgaagctgaaaacaagttctcattgggaaaaaggaggaatccagatgactgtgtaagtgcatatctgctgagtggtgatattattattgggaggtgcagtgaatctggtactgatcatagcataaaactgaggcatactgaaagaggaaatgttcagaaggttgtactttcctctaatgacgagggaaagaattttggtgttgtatccttaagacaggggattgttccagatattgtaattaatccacatgcttttccttcacgacaagctcctggtcaactcctagaggctgctttggggaaggggattgcctgtggtggctcaatgagatatgcaactcctttctctactccctctgttgatgacatcacagatcagcttcatgggaacattgggccagttcaccctctcacccgggagccagtggcagacaggaagagattttgtggggtaaagtttggtgagatggagctcgactgccttatagcccatggagcatcagcaaacttacatgaacgccttttcactctttgtgactcctcccaaatgcatgcttgccagaaatgcaaaaatgcggctaatgtgatagatggaacagttgatggccgtagaatccgggggccctattgcctggtctgtaagtctgttgatgacattgtcaggttgaatgttccatacggggccaagttattgtgccaggaacttttcagtatgggcataagtctcaagtttgagaccaggctctgcagagtgagcactagaactctgtttcgggagcgctatagaactttgttttgtaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000228 GO:0000418 GO:0000419 GO:0000428 GO:0000785 GO:0000790 GO:0000792 GO:0002682 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005720 GO:0005730 GO:0005736 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016020 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030422 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0048583 GO:0050776 GO:0050789 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0098542 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169
Pfam Domains
Protein Families
RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

539

Amino Acids

60.48

Weight (kDa)

8.61

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNA_pol_Rpb2_4 PF04566 18 - 79 1.2e-20 RNA polymerase Rpb2, domain 4
RNA_pol_Rpb2_5 PF04567 94 - 141 1.4e-08 RNA polymerase Rpb2, domain 5
RNA_pol_Rpb2_6 PF00562 150 - 277 7.9e-25 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_6 PF00562 343 - 400 2.6e-14 RNA polymerase Rpb2, domain 6
RNA_pol_Rpb2_7 PF04560 422 - 517 3.3e-23 RNA polymerase Rpb2, domain 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 360
Acc16I TGCGCA 1 cut(s) 763
Acc36I ACCTGC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 559
AciI CCGC 2 cut(s) 599, 1391
AcoI YGGCCR 3 cut(s) 631, 691, 1420
AcsI RAATTY 2 cut(s) 238, 1006
AcuI CTGAAG 2 cut(s) 345, 837
AcyI GRCGYC 1 cut(s) 357
AdeI CACNNNGTG 2 cut(s) 413, 559
AfaI GTAC 5 cut(s) 186, 346, 404, 925, 981
AfeI AGCGCT 1 cut(s) 1595
AfiI CCNNNNNNNGG 1 cut(s) 559
AflII CTTAAG 2 cut(s) 442, 1024
AflIII ACRYGT 1 cut(s) 276
AgsI TTSAA 6 cut(s) 27, 244, 468, 715, 787, 1483
AjnI CCWGG 6 cut(s) 225, 637, 1087, 1446, 1512, 1553
AloI GAACNNNNNNTCC 2 cut(s) 474, 506
AluBI AGCT 9 cut(s) 10, 175, 313, 323, 807, 821, 1085, 1195, 1288
AluI AGCT 9 cut(s) 10, 175, 313, 323, 807, 821, 1085, 1195, 1288
Alw21I GWGCWC 5 cut(s) 315, 723, 798, 1290, 1574
Alw26I GTCTC 6 cut(s) 103, 118, 507, 576, 1544, 1544
Alw44I GTGCAC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 1560
Ama87I CYCGRG 1 cut(s) 1230
Aor51HI AGCGCT 1 cut(s) 1595
AoxI GGCC 7 cut(s) 596, 631, 691, 1211, 1420, 1436, 1497
ApaI GGGCCC 1 cut(s) 1440
ApaLI GTGCAC 1 cut(s) 719
ApeKI GCWGC 2 cut(s) 172, 1106
ApoI RAATTY 2 cut(s) 238, 1006
AseI ATTAAT 1 cut(s) 1056
Asp700I GAANNNNTTC 1 cut(s) 193
AspA2I CCTAGG 1 cut(s) 724
AspLEI GCGC 2 cut(s) 764, 1596
AspS9I GGNCC 5 cut(s) 421, 1211, 1436, 1437, 1497
AsuC2I CCSGG 3 cut(s) 1231, 1232, 1433
AsuHPI GGTGA 6 cut(s) 107, 566, 902, 1211, 1219, 1289
AvaI CYCGRG 1 cut(s) 1230
AvaII GGWCC 1 cut(s) 421
AvrII CCTAGG 1 cut(s) 724
BaeGI GKGCMC 2 cut(s) 723, 1440
BalI TGGCCA 2 cut(s) 633, 693
BanII GRGCYC 3 cut(s) 315, 1290, 1440
BauI CACGAG 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 5 cut(s) 315, 723, 798, 1290, 1574
BbvI GCAGC 2 cut(s) 184, 1093
BccI CCATC 5 cut(s) 32, 145, 1276, 1400, 1412
BceAI ACGGC 1 cut(s) 1407
BciT130I CCWGG 6 cut(s) 227, 639, 1089, 1448, 1514, 1555
BciVI GTATCC 1 cut(s) 1030
BclI TGATCA 2 cut(s) 475, 928
BcnI CCSGG 3 cut(s) 1231, 1232, 1433
BcoDI GTCTC 6 cut(s) 103, 118, 507, 576, 1544, 1544
BfaI CTAG 3 cut(s) 725, 1100, 1575
BfmI CTRYAG 3 cut(s) 143, 1561, 1597
BfoI RGCGCY 1 cut(s) 1597
BfrI CTTAAG 2 cut(s) 442, 1024
BfuAI ACCTGC 1 cut(s) 511
BfuI GTATCC 1 cut(s) 1030
BglII AGATCT 1 cut(s) 286
BisI GCNGC 4 cut(s) 173, 599, 1107, 1392
BlnI CCTAGG 1 cut(s) 724
BlsI GCNGC 4 cut(s) 174, 600, 1108, 1393
Bme1390I CCNGG 9 cut(s) 227, 639, 1089, 1231, 1232, 1433, 1448, 1514, 1555
Bme18I GGWCC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 1230
BmgT120I GGNCC 5 cut(s) 421, 1211, 1436, 1437, 1497
BmiI GGNNCC 4 cut(s) 1236, 1437, 1438, 1498
BmrFI CCNGG 9 cut(s) 227, 639, 1089, 1231, 1232, 1433, 1448, 1514, 1555
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 5 cut(s) 190, 266, 373, 773, 1322
BmuI ACTGGG 1 cut(s) 641
BpiI GAAGAC 1 cut(s) 384
BpuEI CTTGAG 1 cut(s) 1526
BpuMI CCSGG 3 cut(s) 1231, 1232, 1433
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 1544
BsaJI CCNNGG 6 cut(s) 261, 628, 724, 1230, 1306, 1432
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 898, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 5 cut(s) 423, 499, 647, 1214, 1238
Bse3DI GCAATG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 6 cut(s) 227, 639, 1089, 1448, 1514, 1555
BseDI CCNNGG 6 cut(s) 261, 628, 724, 1230, 1306, 1432
BseGI GGATG 1 cut(s) 257
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 6 cut(s) 518, 530, 605, 783, 875, 935
BseNI ACTGG 5 cut(s) 423, 499, 647, 1214, 1238
BseRI GAGGAG 2 cut(s) 20, 1345
BseSI GKGCMC 2 cut(s) 723, 1440
BseXI GCAGC 2 cut(s) 184, 1093
BsgI GTGCAG 1 cut(s) 931
BshFI GGCC 7 cut(s) 598, 633, 693, 1213, 1422, 1438, 1499
BsiHKAI GWGCWC 5 cut(s) 315, 723, 798, 1290, 1574
BsiHKCI CYCGRG 1 cut(s) 1230
BsiSI CCGG 3 cut(s) 93, 1231, 1432
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 6 cut(s) 103, 118, 507, 576, 1544, 1544
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 368
BsmI GAATGC 1 cut(s) 710
BsnI GGCC 7 cut(s) 598, 633, 693, 1213, 1422, 1438, 1499
Bso31I GGTCTC 1 cut(s) 1544
BsoBI CYCGRG 1 cut(s) 1230
Bsp120I GGGCCC 1 cut(s) 1436
Bsp1286I GDGCHC 6 cut(s) 315, 723, 798, 1290, 1440, 1574
Bsp1407I TGTACA 1 cut(s) 344
Bsp143I GATC 4 cut(s) 286, 475, 928, 1189
Bsp19I CCATGG 1 cut(s) 1306
BspACI CCGC 2 cut(s) 599, 1391
BspANI GGCC 7 cut(s) 598, 633, 693, 1213, 1422, 1438, 1499
BspCNI CTCAG 6 cut(s) 517, 529, 604, 784, 876, 936
BspLI GGNNCC 4 cut(s) 1236, 1437, 1438, 1498
BspMAI CTGCAG 1 cut(s) 1565
BspMI ACCTGC 1 cut(s) 511
BspTI CTTAAG 2 cut(s) 442, 1024
BspTNI GGTCTC 1 cut(s) 1544
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 344
BsrI ACTGG 5 cut(s) 423, 499, 647, 1214, 1238
BssECI CCNNGG 6 cut(s) 261, 628, 724, 1230, 1306, 1432
BssMI GATC 4 cut(s) 286, 475, 928, 1189
BssNI GRCGYC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 106
BssT1I CCWWGG 4 cut(s) 261, 628, 724, 1306
Bst2BI CACGAG 1 cut(s) 106
Bst2UI CCWGG 6 cut(s) 227, 639, 1089, 1448, 1514, 1555
Bst4CI ACNGT 3 cut(s) 413, 866, 1414
Bst6I CTCTTC 2 cut(s) 327, 1247
BstACI GRCGYC 1 cut(s) 357
BstAFI CTTAAG 2 cut(s) 442, 1024
BstAPI GCANNNNNTGC 1 cut(s) 707
BstAUI TGTACA 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 1368, 1372
BstDEI CTNAG 7 cut(s) 113, 504, 516, 591, 792, 884, 944
BstDSI CCRYGG 1 cut(s) 1306
BstF5I GGATG 1 cut(s) 257
BstH2I RGCGCY 1 cut(s) 1597
BstHHI GCGC 2 cut(s) 764, 1596
BstKTI GATC 4 cut(s) 289, 478, 931, 1192
BstMAI GTCTC 6 cut(s) 103, 118, 507, 576, 1544, 1544
BstMBI GATC 4 cut(s) 286, 475, 928, 1189
BstMWI GCNNNNNNNGC 5 cut(s) 517, 707, 1310, 1380, 1569
BstNI CCWGG 6 cut(s) 227, 639, 1089, 1448, 1514, 1555
BstNSI RCATGY 3 cut(s) 784, 1067, 1370
BstSCI CCNGG 9 cut(s) 225, 637, 1087, 1229, 1230, 1431, 1446, 1512, 1553
BstSFI CTRYAG 3 cut(s) 143, 1561, 1597
BstSLI GKGCMC 2 cut(s) 723, 1440
BstV1I GCAGC 2 cut(s) 184, 1093
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 1030
BsuRI GGCC 7 cut(s) 598, 633, 693, 1213, 1422, 1438, 1499
BtgI CCRYGG 1 cut(s) 1306
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 919
BtsIMutI CAGTG 4 cut(s) 409, 654, 919, 1245
BveI ACCTGC 1 cut(s) 511
Cac8I GCNNGC 2 cut(s) 1368, 1372
CaiI CAGNNNCTG 1 cut(s) 1560
CfoI GCGC 2 cut(s) 764, 1596
Cfr13I GGNCC 5 cut(s) 421, 1211, 1436, 1437, 1497
Cfr9I CCCGGG 1 cut(s) 1230
CseI GACGC 1 cut(s) 135
Csp6I GTAC 5 cut(s) 185, 345, 403, 924, 980
CviAII CATG 9 cut(s) 351, 473, 479, 781, 1064, 1199, 1307, 1328, 1367
CviQI GTAC 5 cut(s) 185, 345, 403, 924, 980
DdeI CTNAG 7 cut(s) 113, 504, 516, 591, 792, 884, 944
DpnI GATC 4 cut(s) 288, 477, 930, 1191
DpnII GATC 4 cut(s) 286, 475, 928, 1189
DraIII CACNNNGTG 2 cut(s) 413, 559
EaeI YGGCCR 3 cut(s) 631, 691, 1420
Eam1104I CTCTTC 2 cut(s) 327, 1247
EarI CTCTTC 2 cut(s) 327, 1247
Ecl136II GAGCTC 2 cut(s) 313, 1288
Eco130I CCWWGG 4 cut(s) 261, 628, 724, 1306
Eco24I GRGCYC 3 cut(s) 315, 1290, 1440
Eco31I GGTCTC 1 cut(s) 1544
Eco32I GATATC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 421
Eco47III AGCGCT 1 cut(s) 1595
Eco53kI GAGCTC 2 cut(s) 313, 1288
Eco57I CTGAAG 2 cut(s) 345, 837
Eco88I CYCGRG 1 cut(s) 1230
EcoICRI GAGCTC 2 cut(s) 313, 1288
EcoO109I RGGNCCY 2 cut(s) 1436, 1437
EcoRII CCWGG 6 cut(s) 225, 637, 1087, 1446, 1512, 1553
EcoRV GATATC 1 cut(s) 618
EcoT14I CCWWGG 4 cut(s) 261, 628, 724, 1306
EcoT22I ATGCAT 1 cut(s) 1368
EcoT38I GRGCYC 3 cut(s) 315, 1290, 1440
ErhI CCWWGG 4 cut(s) 261, 628, 724, 1306
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 9 cut(s) 354, 476, 482, 784, 1067, 1202, 1310, 1331, 1370
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 1 cut(s) 368
FatI CATG 9 cut(s) 350, 472, 478, 780, 1063, 1198, 1306, 1327, 1366
FbaI TGATCA 2 cut(s) 475, 928
Fnu4HI GCNGC 4 cut(s) 173, 599, 1107, 1392
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 3 cut(s) 315, 1290, 1440
Fsp4HI GCNGC 4 cut(s) 173, 599, 1107, 1392
FspBI CTAG 3 cut(s) 725, 1100, 1575
FspI TGCGCA 1 cut(s) 763
GlaI GCGC 2 cut(s) 763, 1595
GluI GCNGC 4 cut(s) 173, 599, 1107, 1392
HaeII RGCGCY 1 cut(s) 1597
HaeIII GGCC 7 cut(s) 598, 633, 693, 1213, 1422, 1438, 1499
HapII CCGG 3 cut(s) 93, 1231, 1432
HgaI GACGC 1 cut(s) 135
HhaI GCGC 2 cut(s) 764, 1596
Hin1I GRCGYC 1 cut(s) 357
Hin1II CATG 9 cut(s) 354, 476, 482, 784, 1067, 1202, 1310, 1331, 1370
Hin6I GCGC 2 cut(s) 762, 1594
HinP1I GCGC 2 cut(s) 762, 1594
HincII GTYRAC 1 cut(s) 1094
HindII GTYRAC 1 cut(s) 1094
HinfI GANTC 7 cut(s) 89, 211, 743, 853, 917, 1352, 1428
HpaII CCGG 3 cut(s) 93, 1231, 1432
HphI GGTGA 6 cut(s) 107, 566, 902, 1211, 1219, 1289
Hpy166II GTNNAC 5 cut(s) 405, 416, 721, 1094, 1219
Hpy188I TCNGA 6 cut(s) 199, 507, 594, 622, 793, 972
Hpy188III TCNNGA 5 cut(s) 106, 857, 1043, 1077, 1589
Hpy8I GTNNAC 5 cut(s) 405, 416, 721, 1094, 1219
HpyAV CCTTC 5 cut(s) 201, 477, 967, 1083, 1111
HpyCH4III ACNGT 3 cut(s) 413, 866, 1414
HpyCH4IV ACGT 4 cut(s) 217, 278, 357, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 517, 707, 1310, 1380, 1569
HpyF3I CTNAG 7 cut(s) 113, 504, 516, 591, 792, 884, 944
HpySE526I ACGT 4 cut(s) 217, 278, 357, 775
Hsp92I GRCGYC 1 cut(s) 357
Hsp92II CATG 9 cut(s) 354, 476, 482, 784, 1067, 1202, 1310, 1331, 1370
HspAI GCGC 2 cut(s) 762, 1594
Ksp22I TGATCA 2 cut(s) 475, 928
Kzo9I GATC 4 cut(s) 286, 475, 928, 1189
LmnI GCTCC 8 cut(s) 7, 320, 804, 1090, 1234, 1285, 1310, 1591
Lsp1109I GCAGC 2 cut(s) 184, 1093
LweI GCATC 5 cut(s) 190, 266, 373, 773, 1322
MaeI CTAG 3 cut(s) 725, 1100, 1575
MaeII ACGT 4 cut(s) 217, 278, 357, 775
MaeIII GTNAC 3 cut(s) 103, 562, 1349
MalI GATC 4 cut(s) 288, 477, 930, 1191
MboI GATC 4 cut(s) 286, 475, 928, 1189
MboII GAAGA 9 cut(s) 55, 98, 281, 338, 341, 344, 389, 752, 1264
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 6 cut(s) 315, 723, 798, 1290, 1440, 1574
MlsI TGGCCA 2 cut(s) 633, 693
MluCI AATT 4 cut(s) 238, 702, 1006, 1053
MluNI TGGCCA 2 cut(s) 633, 693
MlyI GAGTC 1 cut(s) 1346
Mox20I TGGCCA 2 cut(s) 633, 693
Mph1103I ATGCAT 1 cut(s) 1368
MroXI GAANNNNTTC 1 cut(s) 193
MscI TGGCCA 2 cut(s) 633, 693
MseI TTAA 6 cut(s) 234, 252, 443, 687, 1025, 1056
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 2 cut(s) 633, 693
MspCI CTTAAG 2 cut(s) 442, 1024
MspI CCGG 3 cut(s) 93, 1231, 1432
MspR9I CCNGG 9 cut(s) 227, 639, 1089, 1231, 1232, 1433, 1448, 1514, 1555
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 710
MvaI CCWGG 6 cut(s) 227, 639, 1089, 1448, 1514, 1555
MwoI GCNNNNNNNGC 5 cut(s) 517, 707, 1310, 1380, 1569
NciI CCSGG 3 cut(s) 1231, 1232, 1433
NcoI CCATGG 1 cut(s) 1306
NdeII GATC 4 cut(s) 286, 475, 928, 1189
NlaIII CATG 9 cut(s) 354, 476, 482, 784, 1067, 1202, 1310, 1331, 1370
NlaIV GGNNCC 4 cut(s) 1236, 1437, 1438, 1498
NmuCI GTSAC 2 cut(s) 103, 1349
NsbI TGCGCA 1 cut(s) 763
NsiI ATGCAT 1 cut(s) 1368
NspI RCATGY 3 cut(s) 784, 1067, 1370
PaeI GCATGC 1 cut(s) 1370
PctI GAATGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 193
PfeI GAWTC 6 cut(s) 89, 211, 743, 853, 917, 1428
PflFI GACNNNGTC 1 cut(s) 1472
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 4 cut(s) 174, 600, 1108, 1393
PleI GAGTC 1 cut(s) 1346
PpsI GAGTC 1 cut(s) 1346
PshBI ATTAAT 1 cut(s) 1056
Psp124BI GAGCTC 2 cut(s) 315, 1290
Psp6I CCWGG 6 cut(s) 225, 637, 1087, 1446, 1512, 1553
PspGI CCWGG 6 cut(s) 225, 637, 1087, 1446, 1512, 1553
PspN4I GGNNCC 4 cut(s) 1236, 1437, 1438, 1498
PspOMI GGGCCC 1 cut(s) 1436
PspPI GGNCC 5 cut(s) 421, 1211, 1436, 1437, 1497
PstI CTGCAG 1 cut(s) 1565
PstNI CAGNNNCTG 1 cut(s) 1560
PsuI RGATCY 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 1472
RsaI GTAC 5 cut(s) 186, 346, 404, 925, 981
RsaNI GTAC 5 cut(s) 185, 345, 403, 924, 980
RseI CAYNNNNRTG 1 cut(s) 477
SacI GAGCTC 2 cut(s) 315, 1290
SaqAI TTAA 6 cut(s) 234, 252, 443, 687, 1025, 1056
SatI GCNGC 4 cut(s) 173, 599, 1107, 1392
Sau3AI GATC 4 cut(s) 286, 475, 928, 1189
Sau96I GGNCC 5 cut(s) 421, 1211, 1436, 1437, 1497
SchI GAGTC 1 cut(s) 1346
ScrFI CCNGG 9 cut(s) 227, 639, 1089, 1231, 1232, 1433, 1448, 1514, 1555
SduI GDGCHC 6 cut(s) 315, 723, 798, 1290, 1440, 1574
SfaNI GCATC 5 cut(s) 190, 266, 373, 773, 1322
SfcI CTRYAG 3 cut(s) 143, 1561, 1597
SinI GGWCC 1 cut(s) 421
SmaI CCCGGG 1 cut(s) 1232
SmiMI CAYNNNNRTG 1 cut(s) 477
SmlI CTYRAG 3 cut(s) 442, 1024, 1541
SmoI CTYRAG 3 cut(s) 442, 1024, 1541
SphI GCATGC 1 cut(s) 1370
Sse9I AATT 4 cut(s) 238, 702, 1006, 1053
SsiI CCGC 2 cut(s) 599, 1391
SspMI CTAG 3 cut(s) 725, 1100, 1575
SstI GAGCTC 2 cut(s) 315, 1290
StyD4I CCNGG 9 cut(s) 225, 637, 1087, 1229, 1230, 1431, 1446, 1512, 1553
StyI CCWWGG 4 cut(s) 261, 628, 724, 1306
TaaI ACNGT 3 cut(s) 413, 866, 1414
TaiI ACGT 4 cut(s) 220, 281, 360, 778
TaqI TCGA 2 cut(s) 309, 1290
TasI AATT 4 cut(s) 238, 702, 1006, 1053
TatI WGTACW 3 cut(s) 344, 402, 979
TauI GCSGC 2 cut(s) 601, 1394
TfiI GAWTC 6 cut(s) 89, 211, 743, 853, 917, 1428
Tru1I TTAA 6 cut(s) 234, 252, 443, 687, 1025, 1056
Tru9I TTAA 6 cut(s) 234, 252, 443, 687, 1025, 1056
TscAI CASTG 4 cut(s) 416, 654, 919, 1245
TseFI GTSAC 2 cut(s) 103, 1349
TseI GCWGC 2 cut(s) 172, 1106
Tsp45I GTSAC 2 cut(s) 103, 1349
TspDTI ATGAA 3 cut(s) 770, 1187, 1344
TspGWI ACGGA 1 cut(s) 817
TspMI CCCGGG 1 cut(s) 1230
TspRI CASTG 4 cut(s) 416, 654, 919, 1245
Tth111I GACNNNGTC 1 cut(s) 1472
Van91I CCANNNNNTGG 1 cut(s) 559
Vha464I CTTAAG 2 cut(s) 442, 1024
VneI GTGCAC 1 cut(s) 719
VpaK11BI GGWCC 1 cut(s) 421
VspI ATTAAT 1 cut(s) 1056
XapI RAATTY 2 cut(s) 238, 1006
XceI RCATGY 3 cut(s) 784, 1067, 1370
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmaI CCCGGG 1 cut(s) 1230
XmaJI CCTAGG 1 cut(s) 724
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 3 cut(s) 725, 1100, 1575
ZraI GACGTC 1 cut(s) 358
Zsp2I ATGCAT 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.