Rmu_sc0001873.1_g000004

Ribosomal protein-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001873.1
OG0019009
Physical Location & Seq
Reverse (-)
21307 .. 21768
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 462 bp
atggtcggtagccttgattgtatgcactggcagtggaaaaattgtcccaccggatgggcagggcagtatactagctacagaggtaaaccgacaatcatcttagaggcggtgacctcctacgatacttggatttggcatgccttcttcggacttccaggttccctgaatgatattaacgtccttggatgttcaccgttgttcaatgcccaatgcgttggtgaaacccctgaagtgagctaccatgtacgtaataggcattatcgtcaatgttattacctagttgatggcatataccctaagtgggggtcatttgtacaagcaatccgaaacccgaggtcgccgcagacacaacatttcataaggatgcaggaagcatacaaaaaagacatggagagagcatttggtattctccaagctcattgggcaatcataagaggaccagctcgtgggtggagtaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Plant_tran

Protein Analysis

153

Amino Acids

17.76

Weight (kDa)

9.18

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plant_tran PF04827 1 - 153 3.8e-68 Plant transposon protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019009)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0431151
rosa_multiflora Rmu_co8156396.1_g000001 Rmu_sc0001873.1_g000004 Rmu_sc0005738.1_g000005 Rmu_sc0040065.1_g000003
rosa_roxburghii Rroxscaffold_5G00348370
rosa_rugosa Rorug03G0325900
rosa_samantha Rh5BG387800 Rh6DG049300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 54, 446
AccI GTMKAC 1 cut(s) 68
AciI CCGC 2 cut(s) 107, 341
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 2 cut(s) 246, 315
AfiI CCNNNNNNNGG 4 cut(s) 54, 301, 302, 446
AgsI TTSAA 1 cut(s) 202
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 4 cut(s) 75, 237, 416, 443
AluI AGCT 4 cut(s) 75, 237, 416, 443
Ama87I CYCGRG 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 121, 183, 230
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 437
BauI CACGAG 1 cut(s) 444
BccI CCATC 2 cut(s) 48, 278
BciT130I CCWGG 1 cut(s) 156
BfaI CTAG 2 cut(s) 72, 278
BfmI CTRYAG 1 cut(s) 76
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 437
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 248
BsaJI CCNNGG 2 cut(s) 181, 332
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 301, 302, 446
Bse1I ACTGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 181, 332
BseGI GGATG 3 cut(s) 59, 191, 369
BseLI CCNNNNNNNGG 4 cut(s) 54, 301, 302, 446
BseNI ACTGG 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 4 cut(s) 54, 301, 302, 446
BsmFI GGGAC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 313
BspACI CCGC 2 cut(s) 107, 341
BspLI GGNNCC 1 cut(s) 160
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 181, 332
BssNAI GTATAC 1 cut(s) 69
BssSI CACGAG 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 181
Bst1107I GTATAC 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 195
BstAUI TGTACA 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 100, 297
BstEII GGTNACC 1 cut(s) 109
BstF5I GGATG 3 cut(s) 59, 191, 369
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 140
BstPI GGTNACC 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 154
BstSFI CTRYAG 1 cut(s) 76
BstSNI TACGTA 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 69
BtsCI GGATG 3 cut(s) 59, 191, 369
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 2 cut(s) 25, 38
Cac8I GCNNGC 1 cut(s) 138
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 245, 314
CviAII CATG 3 cut(s) 137, 242, 388
CviJI RGCY 5 cut(s) 12, 75, 237, 416, 443
CviKI_1 RGCY 5 cut(s) 12, 75, 237, 416, 443
CviQI GTAC 2 cut(s) 245, 314
DdeI CTNAG 2 cut(s) 100, 297
Eco105I TACGTA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 331
Eco91I GGTNACC 1 cut(s) 109
EcoO65I GGTNACC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 140, 245, 391
FaqI GGGAC 1 cut(s) 30
FatI CATG 3 cut(s) 136, 241, 387
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 3 cut(s) 66, 198, 376
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 2 cut(s) 72, 278
GluI GCNGC 1 cut(s) 341
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 140, 245, 391
HpaII CCGG 1 cut(s) 51
HphI GGTGA 3 cut(s) 121, 183, 230
Hpy166II GTNNAC 3 cut(s) 69, 86, 191
Hpy188I TCNGA 2 cut(s) 149, 326
Hpy8I GTNNAC 3 cut(s) 69, 86, 191
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 2 cut(s) 177, 247
HpyCH4V TGCA 2 cut(s) 25, 367
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 2 cut(s) 100, 297
HpySE526I ACGT 2 cut(s) 177, 247
Hsp92II CATG 3 cut(s) 140, 245, 391
LpnPI CCDG 9 cut(s) 13, 45, 64, 141, 168, 176, 240, 353, 453
LweI GCATC 1 cut(s) 354
MaeI CTAG 2 cut(s) 72, 278
MaeII ACGT 2 cut(s) 177, 247
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 1 cut(s) 136
MluCI AATT 1 cut(s) 40
MnlI CCTC 5 cut(s) 74, 97, 124, 327, 428
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 156
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 422
NlaIII CATG 3 cut(s) 140, 245, 391
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
PflMI CCANNNNNTGG 2 cut(s) 54, 446
PkrI GCNGC 1 cut(s) 342
Ppu21I YACGTR 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 437
RsaI GTAC 2 cut(s) 246, 315
RsaNI GTAC 2 cut(s) 245, 314
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 1 cut(s) 341
Sau96I GGNCC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 156
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 362
SnaBI TACGTA 1 cut(s) 248
SphI GCATGC 1 cut(s) 140
Sse9I AATT 1 cut(s) 40
SsiI CCGC 2 cut(s) 107, 341
SspMI CTAG 2 cut(s) 72, 278
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 2 cut(s) 180, 250
TasI AATT 1 cut(s) 40
TatI WGTACW 1 cut(s) 313
TauI GCSGC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 32, 38
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 346
TspRI CASTG 2 cut(s) 32, 38
Van91I CCANNNNNTGG 2 cut(s) 54, 446
VpaK11BI GGWCC 1 cut(s) 437
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 2 cut(s) 72, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.