Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001940.1

Orthogroup ID

OG0018593

Physical Location & Seq

Genomic Coordinates Reverse (-)

6505 .. 9266

Gene Structure 2762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgaagtacattgtcattatcgatcctggaaatgctgttaatcccagttacggtgtaaccttcccggactacctcaaccccaaaactgtgtcatggcggggtgatgagttctgcctctttcatgaacttgtccctattgttggcttatggattgacttgaacaaggctgcaggagtgcaggcgcccatagggaccagaatcatagccgctagtgcatatcactataatggcattttagagtacaatgctcgcaatctgtatggcatctccgaaaccattgcaactcagaaggctcttgtaggccttgatggcaagcggccctttgtactatcccgctccacttatgttggttcaggcaagtttgctgcacattggactggtgataacaggggtataggaaaaactaaagcccggaccgttcgggccggtcccgggccggttccgggtcgggttccgggttttggggctaaaatcccagccctagctagaacaataaagcctctcgtcataactcacataacctttccggctggggcaaacaatgcaaaagccaagggtaacttgttccttgacaacgacgagcttccagaaatgaaacttgtaagcggcaactccacatacattgatttcgatctttgcaactctaaatcacggaatgtgaaagtgtggtcagaagttcaggaggacaagtttgttttagacaaaggttggtcagtgggtcacttgaccactgtgttgggaatagatggaagtggtggatcatcagctcttgaagttaatggaaactcagtgaaaagtgttttgagacataaagttgagtgcaacggagcatacgtacctataactctagaagatatcaaaaaagaaaagaagaagaccaagagcgtaatggtagaggtttgtggtttgtcacttccttgggtaaaaactttgccgtgtcatggaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0009044 GO:0009056 GO:0009057 GO:0009505 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0010383 GO:0010410 GO:0010411 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045493 GO:0046556 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071554 GO:0071704 GO:0071944 GO:0080176 GO:0097599 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Gal_mutarotas_2 Glyco_hydro_31 NtCtMGAM_N

Protein Analysis

316

Amino Acids

34.16

Weight (kDa)

9.35

Isoelectric Point (pI)

25.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_31_2nd	PF01055	19 - 130	9e-23	Glycosyl hydrolases family 31 TIM-barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018593)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0435301 RchiOBHm_Chr4g0435311
rosa_laevigata	RLG00000006599 RLG00000006600
rosa_multiflora	Rmu_sc0001940.1_g000002
rosa_rugosa	Rorug04G0284300
rosa_samantha	Rh4BG348100 Rh4BG348200 Rh4CG362700 Rh4CG362800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	181
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	5 cut(s)	97, 207, 316, 334, 606
AclWI	GGATC	2 cut(s)	17, 766
AcyI	GRCGYC	1 cut(s)	182
AfaI	GTAC	4 cut(s)	8, 242, 327, 837
AfiI	CCNNNNNNNGG	6 cut(s)	50, 140, 432, 443, 461, 941
AgsI	TTSAA	2 cut(s)	160, 773
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	485, 583, 767
AluI	AGCT	3 cut(s)	485, 583, 767
Alw26I	GTCTC	1 cut(s)	799
AlwI	GGATC	2 cut(s)	17, 766
Ama87I	CYCGRG	1 cut(s)	431
AoxI	GGCC	4 cut(s)	301, 317, 423, 434
ApeKI	GCWGC	2 cut(s)	167, 365
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	6 cut(s)	192, 318, 414, 423, 428, 434
AsuC2I	CCSGG	6 cut(s)	65, 412, 432, 433, 444, 456
AsuHPI	GGTGA	2 cut(s)	113, 392
AvaI	CYCGRG	1 cut(s)	431
AvaII	GGWCC	3 cut(s)	192, 414, 428
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	881
BbvI	GCAGC	2 cut(s)	154, 352
BccI	CCATC	2 cut(s)	302, 740
BceAI	ACGGC	1 cut(s)	919
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	1 cut(s)	27
BcnI	CCSGG	6 cut(s)	65, 412, 432, 433, 444, 456
BcoDI	GTCTC	1 cut(s)	799
BfaI	CTAG	4 cut(s)	210, 482, 486, 848
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	5 cut(s)	168, 207, 317, 366, 607
BlsI	GCNGC	5 cut(s)	169, 208, 318, 367, 608
Bme1390I	CCNGG	7 cut(s)	27, 65, 412, 432, 433, 444, 456
Bme18I	GGWCC	3 cut(s)	192, 414, 428
BmeT110I	CYCGRG	1 cut(s)	431
BmgT120I	GGNCC	6 cut(s)	192, 318, 414, 423, 428, 434
BmiI	GGNNCC	5 cut(s)	183, 193, 430, 441, 453
BmrFI	CCNGG	7 cut(s)	27, 65, 412, 432, 433, 444, 456
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	881
BpuMI	CCSGG	6 cut(s)	65, 412, 432, 433, 444, 456
Bsa29I	ATCGAT	1 cut(s)	21
BsaAI	YACGTR	1 cut(s)	835
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	3 cut(s)	431, 552, 917
BsaXI	ACNNNNNCTCC	4 cut(s)	674, 704, 819, 849
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 140, 432, 443, 461, 941
Bse118I	RCCGGY	2 cut(s)	425, 436
Bse1I	ACTGG	2 cut(s)	45, 382
Bse3DI	GCAATG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	27
BseCI	ATCGAT	1 cut(s)	21
BseDI	CCNNGG	3 cut(s)	431, 552, 917
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	6 cut(s)	50, 140, 432, 443, 461, 941
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	299, 801
BseNI	ACTGG	2 cut(s)	45, 382
BseXI	GCAGC	2 cut(s)	154, 352
BseYI	CCCAGC	2 cut(s)	475, 530
BsgI	GTGCAG	2 cut(s)	197, 351
BshFI	GGCC	4 cut(s)	303, 319, 425, 436
BshNI	GGYRCC	1 cut(s)	181
BshVI	ATCGAT	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	431
BsiSI	CCGG	8 cut(s)	65, 412, 426, 432, 437, 443, 455, 527
BslFI	GGGAC	3 cut(s)	116, 205, 414
BslI	CCNNNNNNNGG	6 cut(s)	50, 140, 432, 443, 461, 941
BsmAI	GTCTC	1 cut(s)	799
BsmFI	GGGAC	3 cut(s)	116, 205, 414
BsnI	GGCC	4 cut(s)	303, 319, 425, 436
BsoBI	CYCGRG	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	22, 631, 758
BspACI	CCGC	5 cut(s)	97, 207, 316, 334, 606
BspANI	GGCC	4 cut(s)	303, 319, 425, 436
BspCNI	CTCAG	2 cut(s)	298, 800
BspDI	ATCGAT	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	5 cut(s)	183, 193, 430, 441, 453
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	2 cut(s)	17, 766
BspT107I	GGYRCC	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	276
BsrFI	RCCGGY	2 cut(s)	425, 436
BsrI	ACTGG	2 cut(s)	45, 382
BssAI	RCCGGY	2 cut(s)	425, 436
BssECI	CCNNGG	3 cut(s)	431, 552, 917
BssMI	GATC	3 cut(s)	22, 631, 758
BssNI	GRCGYC	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	552, 917
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	4 cut(s)	53, 88, 418, 733
BstACI	GRCGYC	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	3 cut(s)	180, 250, 314
BstDEI	CTNAG	2 cut(s)	285, 787
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	3 cut(s)	25, 634, 761
BstMAI	GTCTC	1 cut(s)	799
BstMBI	GATC	3 cut(s)	22, 631, 758
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 309, 542
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	7 cut(s)	25, 63, 410, 430, 431, 442, 454
BstSFI	CTRYAG	1 cut(s)	168
BstSNI	TACGTA	1 cut(s)	835
BstV1I	GCAGC	2 cut(s)	154, 352
BstV2I	GAAGAC	1 cut(s)	881
BstXI	CCANNNNNNTGG	1 cut(s)	736
Bsu15I	ATCGAT	1 cut(s)	21
BsuRI	GGCC	4 cut(s)	303, 319, 425, 436
BsuTUI	ATCGAT	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	720, 729, 795
Cac8I	GCNNGC	3 cut(s)	180, 250, 314
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	425, 436
Cfr13I	GGNCC	6 cut(s)	192, 318, 414, 423, 428, 434
Cfr9I	CCCGGG	1 cut(s)	431
ClaI	ATCGAT	1 cut(s)	21
CpoI	CGGWCCG	1 cut(s)	414
Csp6I	GTAC	4 cut(s)	7, 241, 326, 836
CspCI	CAANNNNNGTGG	4 cut(s)	328, 363, 604, 639
CspI	CGGWCCG	1 cut(s)	414
CviAII	CATG	3 cut(s)	93, 122, 941
CviQI	GTAC	4 cut(s)	7, 241, 326, 836
DdeI	CTNAG	2 cut(s)	285, 787
DinI	GGCGCC	1 cut(s)	183
DpnI	GATC	3 cut(s)	24, 633, 760
DpnII	GATC	3 cut(s)	22, 631, 758
Eco105I	TACGTA	1 cut(s)	835
Eco130I	CCWWGG	2 cut(s)	552, 917
Eco147I	AGGCCT	1 cut(s)	303
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	3 cut(s)	192, 414, 428
Eco88I	CYCGRG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	25
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	552, 917
EgeI	GGCGCC	1 cut(s)	183
EheI	GGCGCC	1 cut(s)	183
ErhI	CCWWGG	2 cut(s)	552, 917
FaeI	CATG	3 cut(s)	96, 125, 944
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 545, 577
FaqI	GGGAC	3 cut(s)	116, 205, 414
FatI	CATG	3 cut(s)	92, 121, 940
FauI	CCCGC	2 cut(s)	90, 341
Fnu4HI	GCNGC	5 cut(s)	168, 207, 317, 366, 607
Fsp4HI	GCNGC	5 cut(s)	168, 207, 317, 366, 607
FspBI	CTAG	4 cut(s)	210, 482, 486, 848
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	5 cut(s)	168, 207, 317, 366, 607
GsaI	CCCAGC	2 cut(s)	479, 534
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	4 cut(s)	303, 319, 425, 436
HapII	CCGG	8 cut(s)	65, 412, 426, 432, 437, 443, 455, 527
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	96, 125, 944
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	8 cut(s)	65, 412, 426, 432, 437, 443, 455, 527
HphI	GGTGA	2 cut(s)	113, 392
Hpy188I	TCNGA	3 cut(s)	271, 288, 673
Hpy188III	TCNNGA	5 cut(s)	122, 587, 680, 770, 848
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	70, 283
HpyCH4III	ACNGT	4 cut(s)	53, 88, 418, 733
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	8 cut(s)	170, 178, 215, 281, 368, 545, 639, 822
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 309, 542
HpyF3I	CTNAG	2 cut(s)	285, 787
HpySE526I	ACGT	1 cut(s)	834
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	3 cut(s)	96, 125, 944
HspAI	GCGC	1 cut(s)	182
KasI	GGCGCC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	22, 631, 758
LmnI	GCTCC	2 cut(s)	341, 827
Lsp1109I	GCAGC	2 cut(s)	154, 352
LweI	GCATC	1 cut(s)	273
MaeI	CTAG	4 cut(s)	210, 482, 486, 848
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	5 cut(s)	47, 55, 557, 719, 909
MalI	GATC	3 cut(s)	24, 633, 760
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	3 cut(s)	22, 631, 758
MboII	GAAGA	3 cut(s)	863, 883, 886
MluCI	AATT	1 cut(s)	946
Mly113I	GGCGCC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	83, 125, 510, 676, 889
MseI	TTAA	2 cut(s)	39, 777
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	8 cut(s)	65, 412, 426, 432, 437, 443, 455, 527
MspR9I	CCNGG	7 cut(s)	27, 65, 412, 432, 433, 444, 456
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	212, 309, 542
NarI	GGCGCC	1 cut(s)	182
NciI	CCSGG	6 cut(s)	65, 412, 432, 433, 444, 456
NdeII	GATC	3 cut(s)	22, 631, 758
NlaIII	CATG	3 cut(s)	96, 125, 944
NlaIV	GGNNCC	5 cut(s)	183, 193, 430, 441, 453
NmuCI	GTSAC	2 cut(s)	719, 909
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	831
PfeI	GAWTC	1 cut(s)	198
PfoI	TCCNGGA	2 cut(s)	25, 63
PkrI	GCNGC	5 cut(s)	169, 208, 318, 367, 608
PluTI	GGCGCC	1 cut(s)	185
Ppu21I	YACGTR	1 cut(s)	835
Psp6I	CCWGG	1 cut(s)	25
PspFI	CCCAGC	2 cut(s)	475, 530
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	183, 193, 430, 441, 453
PspPI	GGNCC	6 cut(s)	192, 318, 414, 423, 428, 434
PstI	CTGCAG	1 cut(s)	172
RsaI	GTAC	4 cut(s)	8, 242, 327, 837
RsaNI	GTAC	4 cut(s)	7, 241, 326, 836
RseI	CAYNNNNRTG	1 cut(s)	225
Rsr2I	CGGWCCG	1 cut(s)	414
RsrII	CGGWCCG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	39, 777
SatI	GCNGC	5 cut(s)	168, 207, 317, 366, 607
Sau3AI	GATC	3 cut(s)	22, 631, 758
Sau96I	GGNCC	6 cut(s)	192, 318, 414, 423, 428, 434
ScrFI	CCNGG	7 cut(s)	27, 65, 412, 432, 433, 444, 456
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	168
SfoI	GGCGCC	1 cut(s)	183
SinI	GGWCC	3 cut(s)	192, 414, 428
SmaI	CCCGGG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	225
SnaBI	TACGTA	1 cut(s)	835
Sse9I	AATT	1 cut(s)	946
SseBI	AGGCCT	1 cut(s)	303
SsiI	CCGC	5 cut(s)	97, 207, 316, 334, 606
SspDI	GGCGCC	1 cut(s)	181
SspMI	CTAG	4 cut(s)	210, 482, 486, 848
StuI	AGGCCT	1 cut(s)	303
StyD4I	CCNGG	7 cut(s)	25, 63, 410, 430, 431, 442, 454
StyI	CCWWGG	2 cut(s)	552, 917
TaaI	ACNGT	4 cut(s)	53, 88, 418, 733
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	2 cut(s)	21, 630
TasI	AATT	1 cut(s)	946
TatI	WGTACW	3 cut(s)	6, 240, 325
TauI	GCSGC	3 cut(s)	209, 319, 609
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	2 cut(s)	39, 777
Tru9I	TTAA	2 cut(s)	39, 777
TscAI	CASTG	3 cut(s)	720, 736, 795
TseFI	GTSAC	2 cut(s)	719, 909
TseI	GCWGC	2 cut(s)	167, 365
Tsp45I	GTSAC	2 cut(s)	719, 909
TspDTI	ATGAA	4 cut(s)	17, 110, 138, 608
TspGWI	ACGGA	2 cut(s)	667, 840
TspMI	CCCGGG	1 cut(s)	431
TspRI	CASTG	3 cut(s)	720, 736, 795
VpaK11BI	GGWCC	3 cut(s)	192, 414, 428
XbaI	TCTAGA	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XmaI	CCCGGG	1 cut(s)	431
XspI	CTAG	4 cut(s)	210, 482, 486, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.