Rmu_sc0002200.1_g000053

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002200.1
OG0017209
Physical Location & Seq
Reverse (-)
243091 .. 248679
5589 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2976 bp
atgaaagccattactcccctttttcgccgtttttcgaaagccaaagaatcacaagctttgatatcattaattggatgttccactcaagacccaactcttgcaaaacaagtatttggtaaattattggatcaatacccaggtagcattacattgaggaaactctatgctagctttattgtcaatgagaatctccacggcgacgcttcgctaggtatcaagttcatgagagcttatgctgcttgtggtgaacctagaatggcacgctgtatatttgatcgaattcatgataagaatgtcatattttgtaatgtcatgatcagaagctatgtgaataaccgtttgtaccatgatgctcttgttttgtacaaaacaatgtctgccattgggtttgatcctgataactatacgtacccttgtgtcctcaaggcttgttctgggtcggataatttgtgggtgggattgcaaattcatgttgctgttgtgaaagttgggcttgatcggaatttgtttattgggaatggtctgattgccatgtatgggaaatgcggttgtttggtggaggctcggcgcatttttgataagatgccatgtagagatgtggtttcgtgtaattctatggtagctgggtatgcacaaaatgaacggttcgatgatgcactagatgtttgtaggaaaatgaagacattggggcttaaaccagattctggtaccatggctagcctattcccagctgtgaccaacacttcatctgagaatgtttcgtatgttaaggaaatgtttatgaaattggataaacagagtttggtttcgtggaatgtgatgatagcagtgtatgtgaataattcgatgcctggtgaagcagttgaccttttcttacagatggaggagagcggtatagaacctgatgcagtcacaattgcaagtgttcttcctgcttgtggggatctttctgctctgttgctagggaagcggattcatgaatatgttgagagaaagagacttgggccaaatttgttattggagaatgcattgattgacatgtatgctaagtgtggatgtttacgagatgcaagagaagtctttgatgcgatgacatttcaggatgttgtctcgtggacttccatgatgtctgcatacggtaggagtggacaaggtcatgacgctgtggcactttttgtgaaaatgtgtgactcaggtgtacttcctgattcaattgcatttgtatcggttctcgcagcttgcagccatgcgggaatgttggaggaaggacaatattactttaaattgatgactgaggagtacaggattgatcctaggatagagcactgtgcttgttttgtagatctgttggggcgtgctggaagagtggatgaggcttatagttttgtcaaacagatgccactggagcctaatgaaagagtatggggtgctctacttagtgcttgccgggtatactctaacatgagtgtaggacttttagccgctgatcgccttttgcaattggctccagaggaatcgggttattatgttttgttatcaaacatctatgcaaaagctggtaaatggcaagatgtcactgcagtccggtcactgatgaagagtagaggaatcaagaaaataccaggtgtcagcaatgttgaactcaaagaccaggttcacacttttcttgctggtgacagatcacatcctcagtctaaagtgatatatgaagaattagatattttggttgggaaaatgaaggagttaggttatgtccctgagaccgattctgctcttcatgacgtggaggaggaggagaaggaatgccatcttgcagttcacagtgagaagctggcaattgtgtttgccattctcaatactgaacgaggggcattgatcagaattaccaaaaatcttcgtgtttgtagtgattgccatattgctgctaagctaatctctaaaattgctgaacgcgaaattgttgtcagggatactaatcgtttccaccattttaaggatggcatatgttcttgtggggactattgtgagcaagtcttttggctgcaggaaaatttcaaaatggctctaacaaatgggttggaaattcctaaagaagtgctagaagcagaaatcaaatccttttttgactcagctcctcctttaaagaacagagatgatgtcagtgaaaaacttgaggcatttgttaaaaagaattcgcagccttctggaaatggtggagctaggagggtggtttgtgtaacctctggtggtaccacggttcctctggagcaacgatgtattcgctacattgacaacttcagctcaggtcagagaggagcagcttccacagagtactttttgaaggcaggctatgctgttatctttctttatcggaggggaacttgccagccatattgcagatctcttcccgatgatccattacttaaatgtctggaaattgtggacgagtcaaacattcaagtacaccagtcccattcacaagcagtgaggagtgctatcacgaagactcatgctatggttgcgtttacaatgcgaaggattggaccacatgccatgctatatcttgcagcagcagtatctgacttctacgtcccttggaagagcatggcagtgcacaaaattcagtcagggtctggtccattggatatgcgacttgttcaggtgccaaagatgctcttagtgctgaggaaagactgggcccccatggccttctgcatatcattcaagctagaaacagattcaaagatcctgttagagaaggctgatatggctcttaggaagtacaagatgcatatggttgtagccaacgagcttttgagccgaaaagaagaggttgtagtcgtcaccagcaatgaaaagattttagttcgccaaaacaagtctctgggtgttgatgatgtggagagcgcccttattgagcttcttgtggagaggcattcagcttatgttgatcagatcaatactgattttatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

991

Amino Acids

110.78

Weight (kDa)

7.24

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 97 - 144 6.8e-09 PPR repeat family
PPR_2 PF13041 198 - 243 1.4e-08 PPR repeat family
PPR_2 PF13041 268 - 313 1.4e-09 PPR repeat family
PPR PF01535 269 - 299 9.5e-07 PPR repeat
PPR_2 PF13041 368 - 415 2.1e-09 PPR repeat family
PPR PF01535 370 - 400 6.4e-07 PPR repeat
E_motif PF20431 485 - 547 1.3e-21 E motif
Eplus_motif PF20430 552 - 576 1.9e-09 E+ motif
DYW_deaminase PF14432 583 - 674 7.2e-41 DYW family of nucleic acid deaminases
DFP PF04127 825 - 960 1.3e-10 DNA/pantothenate metabolism flavoprotein C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G49142
fragaria_vesca FvH4_7g08230
malus_domestica MD07G1283100.v1.1
prunus_persica Prupe.2G305300_v2.0.a1
pyrus_communis pycom07g25720
rosa_laevigata RLG00000029048
rosa_multiflora Rmu_sc0002200.1_g000053
rosa_roxburghii Rroxscaffold_4G00311530
rosa_rugosa Rorug01G0161000.1
rosa_samantha Rh1AG176000 Rh1BG144100
rosa_wichuraiana Rw0G004940 Rw1G014650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2588
Acc65I GGTACC 2 cut(s) 707, 2249
AccB1I GGYRCC 3 cut(s) 707, 2249, 2662
AccB7I CCANNNNNTGG 1 cut(s) 704
AccBSI CCGCTC 1 cut(s) 891
AccI GTMKAC 1 cut(s) 1452
AccII CGCG 1 cut(s) 1953
AciI CCGC 5 cut(s) 546, 891, 970, 1250, 1482
AclWI GGATC 6 cut(s) 135, 386, 951, 1304, 2408, 2740
AcsI RAATTY 8 cut(s) 279, 465, 502, 1009, 2050, 2082, 2191, 2619
AcuI CTGAAG 1 cut(s) 2281
AfiI CCNNNNNNNGG 4 cut(s) 537, 704, 938, 1993
AflIII ACRYGT 1 cut(s) 1038
AgsI TTSAA 7 cut(s) 1212, 1640, 2056, 2341, 2459, 2725, 2742
AjiI CACGTC 1 cut(s) 1783
AjnI CCWGG 4 cut(s) 136, 850, 1621, 1650
Alw21I GWGCWC 3 cut(s) 1326, 1432, 2616
Alw26I GTCTC 4 cut(s) 991, 1114, 1754, 2886
Alw44I GTGCAC 1 cut(s) 2612
AlwI GGATC 6 cut(s) 135, 386, 951, 1304, 2408, 2740
AlwNI CAGNNNCTG 3 cut(s) 704, 2579, 2633
AoxI GGCC 3 cut(s) 1004, 2697, 2706
ApaI GGGCCC 1 cut(s) 2701
ApaLI GTGCAC 1 cut(s) 2612
ApeKI GCWGC 9 cut(s) 236, 1235, 1242, 1922, 2041, 2197, 2318, 2567, 2570
ApoI RAATTY 8 cut(s) 279, 465, 502, 1009, 2050, 2082, 2191, 2619
ArsI GACNNNNNNTTYG 2 cut(s) 1947, 1979
AseI ATTAAT 1 cut(s) 68
Asp718I GGTACC 2 cut(s) 707, 2249
AspA2I CCTAGG 1 cut(s) 1313
AspLEI GCGC 2 cut(s) 570, 2909
AspS9I GGNCC 5 cut(s) 1004, 2543, 2636, 2697, 2698
AsuC2I CCSGG 1 cut(s) 1448
AsuHPI GGTGA 4 cut(s) 257, 866, 1685, 2836
AsuII TTCGAA 1 cut(s) 35
AsuNHI GCTAGC 2 cut(s) 167, 716
AvaII GGWCC 2 cut(s) 2543, 2636
AvrII CCTAGG 1 cut(s) 1313
BaeGI GKGCMC 2 cut(s) 2616, 2701
BaeI ACNNNNGTAYC 2 cut(s) 2241, 2274
BanI GGYRCC 3 cut(s) 707, 2249, 2662
BanII GRGCYC 1 cut(s) 2701
BauI CACGAG 1 cut(s) 1111
BbsI GAAGAC 2 cut(s) 686, 2510
Bbv12I GWGCWC 3 cut(s) 1326, 1432, 2616
BbvCI CCTCAGC 1 cut(s) 2684
BbvI GCAGC 9 cut(s) 223, 1247, 1254, 1909, 2028, 2209, 2330, 2579, 2582
BccI CCATC 3 cut(s) 874, 1815, 1991
BceAI ACGGC 2 cut(s) 12, 211
BcgI CGANNNNNNTGC 2 cut(s) 1206, 1240
BciT130I CCWGG 4 cut(s) 138, 852, 1623, 1652
BciVI GTATCC 1 cut(s) 1963
BclI TGATCA 3 cut(s) 315, 1875, 2950
BcnI CCSGG 1 cut(s) 1448
BcoDI GTCTC 4 cut(s) 991, 1114, 1754, 2886
BfmI CTRYAG 2 cut(s) 1578, 2042
BfoI RGCGCY 1 cut(s) 2910
BfuI GTATCC 1 cut(s) 1963
BglI GCCNNNNNGGC 1 cut(s) 2705
BglII AGATCT 2 cut(s) 1342, 2399
BlnI CCTAGG 1 cut(s) 1313
BlpI GCTNAGC 1 cut(s) 1926
BmcAI AGTACT 1 cut(s) 2333
Bme1390I CCNGG 5 cut(s) 138, 852, 1448, 1623, 1652
Bme18I GGWCC 2 cut(s) 2543, 2636
BmgBI CACGTC 1 cut(s) 1783
BmgT120I GGNCC 5 cut(s) 1004, 2543, 2636, 2697, 2698
BmiI GGNNCC 8 cut(s) 709, 1407, 1506, 2251, 2259, 2664, 2699, 2700
BmrFI CCNGG 5 cut(s) 138, 852, 1448, 1623, 1652
BmrI ACTGGG 1 cut(s) 2704
BmtI GCTAGC 2 cut(s) 171, 720
BmuI ACTGGG 1 cut(s) 2704
BpiI GAAGAC 2 cut(s) 686, 2510
BpmI CTGGAG 3 cut(s) 1424, 1491, 2285
Bpu10I CCTNAGC 2 cut(s) 2302, 2684
Bpu1102I GCTNAGC 1 cut(s) 1926
Bpu14I TTCGAA 1 cut(s) 35
BpuEI CTTGAG 3 cut(s) 69, 407, 2192
BpuMI CCSGG 1 cut(s) 1448
BsaAI YACGTR 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 1974
BsaI GGTCTC 1 cut(s) 1754
BsaJI CCNNGG 7 cut(s) 136, 193, 711, 1313, 2253, 2594, 2703
BsaWI WCCGGW 1 cut(s) 1584
Bsc4I CCNNNNNNNGG 4 cut(s) 537, 704, 938, 1993
Bse1I ACTGG 3 cut(s) 1407, 2467, 2699
Bse3DI GCAATG 2 cut(s) 1639, 2857
Bse8I GATNNNNATC 1 cut(s) 1974
BseBI CCWGG 4 cut(s) 138, 852, 1623, 1652
BseDI CCNNGG 7 cut(s) 136, 193, 711, 1313, 2253, 2594, 2703
BseGI GGATG 6 cut(s) 80, 1061, 1108, 1375, 1684, 2002
BseJI GATNNNNATC 1 cut(s) 1974
BseLI CCNNNNNNNGG 4 cut(s) 537, 704, 938, 1993
BseMI GCAATG 2 cut(s) 1639, 2857
BseMII CTCAG 8 cut(s) 741, 1206, 1284, 1703, 1749, 2142, 2316, 2675
BseNI ACTGG 3 cut(s) 1407, 2467, 2699
BseRI GAGGAG 8 cut(s) 899, 1310, 1802, 1805, 1808, 2124, 2328, 2503
BseSI GKGCMC 2 cut(s) 2616, 2701
BseXI GCAGC 9 cut(s) 223, 1247, 1254, 1909, 2028, 2209, 2330, 2579, 2582
BseYI CCCAGC 2 cut(s) 623, 727
Bsh1236I CGCG 1 cut(s) 1953
BshFI GGCC 3 cut(s) 1006, 2699, 2708
BshNI GGYRCC 3 cut(s) 707, 2249, 2662
BsiHKAI GWGCWC 3 cut(s) 1326, 1432, 2616
BsiSI CCGG 2 cut(s) 1447, 1585
BslFI GGGAC 4 cut(s) 1739, 2030, 2455, 2576
BslI CCNNNNNNNGG 4 cut(s) 537, 704, 938, 1993
BsmAI GTCTC 4 cut(s) 991, 1114, 1754, 2886
BsmFI GGGAC 4 cut(s) 1739, 2030, 2455, 2576
BsmI GAATGC 3 cut(s) 1030, 1808, 2935
BsnI GGCC 3 cut(s) 1006, 2699, 2708
Bso31I GGTCTC 1 cut(s) 1754
Bsp119I TTCGAA 1 cut(s) 35
Bsp120I GGGCCC 1 cut(s) 2697
Bsp1286I GDGCHC 4 cut(s) 1326, 1432, 2616, 2701
Bsp1407I TGTACA 1 cut(s) 363
Bsp1720I GCTNAGC 1 cut(s) 1926
Bsp19I CCATGG 2 cut(s) 711, 2703
BspACI CCGC 5 cut(s) 546, 891, 970, 1250, 1482
BspANI GGCC 3 cut(s) 1006, 2699, 2708
BspCNI CTCAG 8 cut(s) 742, 1205, 1285, 1702, 1750, 2141, 2315, 2676
BspFNI CGCG 1 cut(s) 1953
BspHI TCATGA 6 cut(s) 222, 283, 312, 976, 1156, 1777
BspLI GGNNCC 8 cut(s) 709, 1407, 1506, 2251, 2259, 2664, 2699, 2700
BspMAI CTGCAG 2 cut(s) 1582, 2046
BspOI GCTAGC 2 cut(s) 171, 720
BspPI GGATC 6 cut(s) 135, 386, 951, 1304, 2408, 2740
BspQI GCTCTTC 2 cut(s) 1779, 2594
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 3 cut(s) 707, 2249, 2662
BspTNI GGTCTC 1 cut(s) 1754
BsrBI CCGCTC 1 cut(s) 891
BsrDI GCAATG 2 cut(s) 1639, 2857
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 3 cut(s) 1407, 2467, 2699
BssECI CCNNGG 7 cut(s) 136, 193, 711, 1313, 2253, 2594, 2703
BssNAI GTATAC 1 cut(s) 1453
BssSI CACGAG 1 cut(s) 1111
BssT1I CCWWGG 4 cut(s) 711, 1313, 2594, 2703
Bst1107I GTATAC 1 cut(s) 1453
Bst2BI CACGAG 1 cut(s) 1111
Bst2UI CCWGG 4 cut(s) 138, 852, 1623, 1652
Bst4CI ACNGT 6 cut(s) 338, 645, 1139, 1328, 1823, 2257
Bst6I CTCTTC 6 cut(s) 1357, 1592, 1779, 2409, 2594, 2823
BstAPI GCANNNNNTGC 1 cut(s) 2351
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 9 cut(s) 169, 262, 718, 1240, 1356, 1444, 1833, 2347, 2387
BstDSI CCRYGG 4 cut(s) 193, 711, 2253, 2703
BstF5I GGATG 6 cut(s) 80, 1061, 1108, 1375, 1684, 2002
BstFNI CGCG 1 cut(s) 1953
BstH2I RGCGCY 1 cut(s) 2910
BstHHI GCGC 2 cut(s) 570, 2909
BstMAI GTCTC 4 cut(s) 991, 1114, 1754, 2886
BstNI CCWGG 4 cut(s) 138, 852, 1623, 1652
BstNSI RCATGY 2 cut(s) 1042, 2552
BstSCI CCNGG 5 cut(s) 136, 850, 1446, 1621, 1650
BstSFI CTRYAG 2 cut(s) 1578, 2042
BstSLI GKGCMC 2 cut(s) 2616, 2701
BstSNI TACGTA 1 cut(s) 408
BstUI CGCG 1 cut(s) 1953
BstV1I GCAGC 9 cut(s) 223, 1247, 1254, 1909, 2028, 2209, 2330, 2579, 2582
BstV2I GAAGAC 2 cut(s) 686, 2510
BstX2I RGATCY 4 cut(s) 943, 1342, 2399, 2745
BstYI RGATCY 4 cut(s) 943, 1342, 2399, 2745
BstZ17I GTATAC 1 cut(s) 1453
BsuI GTATCC 1 cut(s) 1963
BsuRI GGCC 3 cut(s) 1006, 2699, 2708
BtgI CCRYGG 4 cut(s) 193, 711, 2253, 2703
BtgZI GCGATG 1 cut(s) 1103
BtrI CACGTC 1 cut(s) 1783
BtsCI GGATG 6 cut(s) 80, 1061, 1108, 1375, 1684, 2002
BtsI GCAGTG 4 cut(s) 834, 1575, 2490, 2616
BtsIMutI CAGTG 9 cut(s) 834, 1324, 1400, 1575, 1589, 1828, 2167, 2490, 2616
Cac8I GCNNGC 9 cut(s) 169, 262, 718, 1240, 1356, 1444, 1833, 2347, 2387
CaiI CAGNNNCTG 3 cut(s) 704, 2579, 2633
CciI TCATGA 6 cut(s) 222, 283, 312, 976, 1156, 1777
CfoI GCGC 2 cut(s) 570, 2909
Cfr13I GGNCC 5 cut(s) 1004, 2543, 2636, 2697, 2698
CseI GACGC 2 cut(s) 209, 1169
CsiI ACCWGGT 2 cut(s) 1621, 1650
DraI TTTAAA 2 cut(s) 1282, 2142
DrdI GACNNNNNNGTC 1 cut(s) 2588
DseDI GACNNNNNNGTC 1 cut(s) 2588
Eam1104I CTCTTC 6 cut(s) 1357, 1592, 1779, 2409, 2594, 2823
EarI CTCTTC 6 cut(s) 1357, 1592, 1779, 2409, 2594, 2823
Eco105I TACGTA 1 cut(s) 408
Eco130I CCWWGG 4 cut(s) 711, 1313, 2594, 2703
Eco24I GRGCYC 1 cut(s) 2701
Eco31I GGTCTC 1 cut(s) 1754
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 2543, 2636
Eco57I CTGAAG 1 cut(s) 2281
EcoO109I RGGNCCY 1 cut(s) 2698
EcoRI GAATTC 2 cut(s) 279, 2191
EcoRII CCWGG 4 cut(s) 136, 850, 1621, 1650
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 4 cut(s) 711, 1313, 2594, 2703
EcoT22I ATGCAT 2 cut(s) 1030, 2793
EcoT38I GRGCYC 1 cut(s) 2701
ErhI CCWWGG 4 cut(s) 711, 1313, 2594, 2703
FalI AAGNNNNNCTT 4 cut(s) 477, 509, 2660, 2692
FaqI GGGAC 4 cut(s) 1739, 2030, 2455, 2576
FauI CCCGC 1 cut(s) 1243
FauNDI CATATG 2 cut(s) 2003, 2793
FbaI TGATCA 3 cut(s) 315, 1875, 2950
FblI GTMKAC 1 cut(s) 1452
FokI GGATG 6 cut(s) 87, 1068, 1115, 1382, 1671, 2009
FriOI GRGCYC 1 cut(s) 2701
GlaI GCGC 2 cut(s) 569, 2908
GsaI CCCAGC 2 cut(s) 627, 731
GsuI CTGGAG 3 cut(s) 1424, 1491, 2285
HaeII RGCGCY 1 cut(s) 2910
HaeIII GGCC 3 cut(s) 1006, 2699, 2708
HapII CCGG 2 cut(s) 1447, 1585
HgaI GACGC 2 cut(s) 209, 1169
HhaI GCGC 2 cut(s) 570, 2909
Hin6I GCGC 2 cut(s) 568, 2907
HinP1I GCGC 2 cut(s) 568, 2907
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HindIII AAGCTT 1 cut(s) 54
HpaII CCGG 2 cut(s) 1447, 1585
HphI GGTGA 4 cut(s) 257, 866, 1685, 2836
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 8 cut(s) 1259, 1732, 1792, 2211, 2335, 2529, 2719, 2752
HpyCH4III ACNGT 6 cut(s) 338, 645, 1139, 1328, 1823, 2257
HpyCH4IV ACGT 3 cut(s) 407, 1782, 2589
HpySE526I ACGT 3 cut(s) 407, 1782, 2589
HspAI GCGC 2 cut(s) 568, 2907
KpnI GGTACC 2 cut(s) 711, 2253
Ksp22I TGATCA 3 cut(s) 315, 1875, 2950
LguI GCTCTTC 2 cut(s) 1779, 2594
LmnI GCTCC 6 cut(s) 1405, 1510, 2137, 2216, 2266, 2315
Lsp1109I GCAGC 9 cut(s) 223, 1247, 1254, 1909, 2028, 2209, 2330, 2579, 2582
MabI ACCWGGT 2 cut(s) 1621, 1650
MaeII ACGT 3 cut(s) 407, 1782, 2589
MaeIII GTNAC 8 cut(s) 733, 910, 1187, 1573, 1587, 1673, 2236, 2842
MbiI CCGCTC 1 cut(s) 891
MfeI CAATTG 4 cut(s) 915, 1212, 1499, 1836
MflI RGATCY 4 cut(s) 943, 1342, 2399, 2745
MhlI GDGCHC 4 cut(s) 1326, 1432, 2616, 2701
MlyI GAGTC 4 cut(s) 1184, 2120, 2456, 2500
MmeI TCCRAC 3 cut(s) 420, 1239, 2058
Mph1103I ATGCAT 2 cut(s) 1030, 2793
MseI TTAA 8 cut(s) 68, 693, 768, 1281, 1992, 2141, 2184, 2424
MslI CAYNNNNRTG 2 cut(s) 981, 2609
MspA1I CMGCKG 2 cut(s) 731, 1484
MspI CCGG 2 cut(s) 1447, 1585
MspR9I CCNGG 5 cut(s) 138, 852, 1448, 1623, 1652
MunI CAATTG 4 cut(s) 915, 1212, 1499, 1836
Mva1269I GAATGC 3 cut(s) 1030, 1808, 2935
MvaI CCWGG 4 cut(s) 138, 852, 1623, 1652
MvnI CGCG 1 cut(s) 1953
NciI CCSGG 1 cut(s) 1448
NcoI CCATGG 2 cut(s) 711, 2703
NdeI CATATG 2 cut(s) 2003, 2793
NheI GCTAGC 2 cut(s) 167, 716
NlaIV GGNNCC 8 cut(s) 709, 1407, 1506, 2251, 2259, 2664, 2699, 2700
NmeAIII GCCGAG 1 cut(s) 544
NmuCI GTSAC 7 cut(s) 733, 910, 1187, 1573, 1587, 1673, 2842
NsiI ATGCAT 2 cut(s) 1030, 2793
NspI RCATGY 2 cut(s) 1042, 2552
NspV TTCGAA 1 cut(s) 35
PagI TCATGA 6 cut(s) 222, 283, 312, 976, 1156, 1777
PciI ACATGT 1 cut(s) 1038
PciSI GCTCTTC 2 cut(s) 1779, 2594
PctI GAATGC 3 cut(s) 1030, 1808, 2935
PfeI GAWTC 9 cut(s) 47, 187, 701, 973, 1208, 1514, 1608, 1766, 2738
PflFI GACNNNGTC 1 cut(s) 1152
PflMI CCANNNNNTGG 1 cut(s) 704
PleI GAGTC 4 cut(s) 1184, 2120, 2455, 2500
PpsI GAGTC 4 cut(s) 1184, 2120, 2455, 2500
Ppu21I YACGTR 1 cut(s) 408
PscI ACATGT 1 cut(s) 1038
PshBI ATTAAT 1 cut(s) 68
Psp6I CCWGG 4 cut(s) 136, 850, 1621, 1650
PspFI CCCAGC 2 cut(s) 623, 727
PspGI CCWGG 4 cut(s) 136, 850, 1621, 1650
PspN4I GGNNCC 8 cut(s) 709, 1407, 1506, 2251, 2259, 2664, 2699, 2700
PspOMI GGGCCC 1 cut(s) 2697
PspPI GGNCC 5 cut(s) 1004, 2543, 2636, 2697, 2698
PstI CTGCAG 2 cut(s) 1582, 2046
PstNI CAGNNNCTG 3 cut(s) 704, 2579, 2633
PsuI RGATCY 4 cut(s) 943, 1342, 2399, 2745
PsyI GACNNNGTC 1 cut(s) 1152
PvuII CAGCTG 1 cut(s) 731
RseI CAYNNNNRTG 2 cut(s) 981, 2609
SapI GCTCTTC 2 cut(s) 1779, 2594
SaqAI TTAA 8 cut(s) 68, 693, 768, 1281, 1992, 2141, 2184, 2424
Sau96I GGNCC 5 cut(s) 1004, 2543, 2636, 2697, 2698
ScaI AGTACT 1 cut(s) 2333
SchI GAGTC 4 cut(s) 1184, 2120, 2456, 2500
ScrFI CCNGG 5 cut(s) 138, 852, 1448, 1623, 1652
SduI GDGCHC 4 cut(s) 1326, 1432, 2616, 2701
SexAI ACCWGGT 2 cut(s) 1621, 1650
SfcI CTRYAG 2 cut(s) 1578, 2042
SfiI GGCCNNNNNGGCC 1 cut(s) 2705
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 2 cut(s) 2543, 2636
SmiMI CAYNNNNRTG 2 cut(s) 981, 2609
SmlI CTYRAG 3 cut(s) 84, 422, 2171
SmoI CTYRAG 3 cut(s) 84, 422, 2171
SnaBI TACGTA 1 cut(s) 408
SsiI CCGC 5 cut(s) 546, 891, 970, 1250, 1482
SspI AATATT 1 cut(s) 1274
StyD4I CCNGG 5 cut(s) 136, 850, 1446, 1621, 1650
StyI CCWWGG 4 cut(s) 711, 1313, 2594, 2703
TaaI ACNGT 6 cut(s) 338, 645, 1139, 1328, 1823, 2257
TaiI ACGT 3 cut(s) 410, 1785, 2592
TaqI TCGA 4 cut(s) 35, 277, 648, 845
TaqII GACCGA 1 cut(s) 1778
TatI WGTACW 6 cut(s) 363, 1198, 1299, 2331, 2461, 2781
TauI GCSGC 1 cut(s) 1484
TfiI GAWTC 9 cut(s) 47, 187, 701, 973, 1208, 1514, 1608, 1766, 2738
Tru1I TTAA 8 cut(s) 68, 693, 768, 1281, 1992, 2141, 2184, 2424
Tru9I TTAA 8 cut(s) 68, 693, 768, 1281, 1992, 2141, 2184, 2424
TscAI CASTG 9 cut(s) 834, 1331, 1407, 1582, 1596, 1828, 2167, 2490, 2616
TseFI GTSAC 7 cut(s) 733, 910, 1187, 1573, 1587, 1673, 2842
TseI GCWGC 9 cut(s) 236, 1235, 1242, 1922, 2041, 2197, 2318, 2567, 2570
Tsp45I GTSAC 7 cut(s) 733, 910, 1187, 1573, 1587, 1673, 2842
TspRI CASTG 9 cut(s) 834, 1331, 1407, 1582, 1596, 1828, 2167, 2490, 2616
Tth111I GACNNNGTC 1 cut(s) 1152
Van91I CCANNNNNTGG 1 cut(s) 704
VneI GTGCAC 1 cut(s) 2612
VpaK11BI GGWCC 2 cut(s) 2543, 2636
VspI ATTAAT 1 cut(s) 68
XapI RAATTY 8 cut(s) 279, 465, 502, 1009, 2050, 2082, 2191, 2619
XceI RCATGY 2 cut(s) 1042, 2552
XcmI CCANNNNNNNNNTGG 2 cut(s) 1994, 2260
XmaJI CCTAGG 1 cut(s) 1313
XmiI GTMKAC 1 cut(s) 1452
ZrmI AGTACT 1 cut(s) 2333
Zsp2I ATGCAT 2 cut(s) 1030, 2793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.