Rmu_sc0002251.1_g000019

Protein of unknown function (DUF789)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002251.1
OG0009397
Physical Location & Seq
Forward (+)
71949 .. 74719
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
atgttgggaacgggattgccggtgacgcgtggccgcggagaagatcggttttacaatccggcgagagcgcgtagggcccaccagagccagaaagccgccgagcaacttcggcgagctcagagcgaccgggtcgggtcggatgtgcagcctcccaagcgggtcgccgtgcccgctggcgagccggccgtgaagccgtcgagtaatctcgagcggttcttgcagtccatcacgccctcagttcctgctcagtacctctccaagacgacgattagaggattgagtacatgtgacgtggagtttcagccattctttgttcttggtgatctgtgggagtctttcaaggagtggagcgcttacggtgccggagtgcctctgattttgaatgatagtgactttgtggtccagtactatgtcccttatttatccgatgaggatagtgacagtgaatttcgggattctagtagtgatggtagctgtgatgttgaaccggttaaaataaaatatttgagggagcagcggaatcatcaaatgtcgagtgaaattcctcaaaggttagaaagcatatctctgagagatcagcattatccactccaagaggactgctccagtgatgagggtgaacctgtaaattcacaaggttgcttattatttgagtattttgaacgtgatcttccttattgccgtgagcctttagctgataagatattagatcttgcttttcgttttcctgagctgaagacaataagaagttgtgatctactggcttccagttggatttctgttgcatggtatccaatttacaggattccaacaggaccaactttaaaggatcttgatgcatgctttctgtcataccattcactttttacccccgtgggagatgtacaagatccccgggctcctgtagtaacctatccgagtgacatggatggtatccctaagatgtccttgcctgtttttggtcttgcttcatacaagttcagagggtccttgtggactcctagtgggggattggaacgacaattagcgaactccctcttgcaggccactgatgactttctaaggctgcatcaggtcaatcatccagattttctgttcttcagccgtcgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF789

Protein Analysis

370

Amino Acids

41.91

Weight (kDa)

5.22

Isoelectric Point (pI)

60.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 67 - 367 2.9e-92 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 211
AccII CGCG 3 cut(s) 28, 36, 70
AciI CCGC 7 cut(s) 34, 36, 96, 157, 171, 211, 517
AclWI GGATC 2 cut(s) 837, 884
AcoI YGGCCR 2 cut(s) 31, 183
AcsI RAATTY 3 cut(s) 446, 540, 628
AcuI CTGAAG 2 cut(s) 755, 1084
AfaI GTAC 4 cut(s) 251, 283, 407, 885
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 3 cut(s) 959, 1007, 1042
AflIII ACRYGT 2 cut(s) 26, 284
AgeI ACCGGT 1 cut(s) 487
AgsI TTSAA 4 cut(s) 340, 382, 485, 662
AjiI CACGTC 1 cut(s) 292
AluBI AGCT 4 cut(s) 116, 474, 695, 733
AluI AGCT 4 cut(s) 116, 474, 695, 733
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 2 cut(s) 837, 884
AlwNI CAGNNNCTG 1 cut(s) 242
Ama87I CYCGRG 2 cut(s) 206, 894
Aor51HI AGCGCT 1 cut(s) 352
AoxI GGCC 4 cut(s) 31, 75, 183, 1044
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 145, 514, 1066
ApoI RAATTY 3 cut(s) 446, 540, 628
AsiGI ACCGGT 1 cut(s) 487
AspLEI GCGC 2 cut(s) 70, 353
AspS9I GGNCC 5 cut(s) 75, 76, 400, 815, 987
AsuC2I CCSGG 3 cut(s) 128, 895, 896
AsuHPI GGTGA 3 cut(s) 34, 332, 629
AvaI CYCGRG 2 cut(s) 206, 894
AvaII GGWCC 3 cut(s) 400, 815, 987
BaeGI GKGCMC 2 cut(s) 79, 171
BanI GGYRCC 1 cut(s) 359
BanII GRGCYC 3 cut(s) 79, 118, 901
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 3 cut(s) 157, 526, 1053
BccI CCATC 3 cut(s) 233, 461, 923
BceAI ACGGC 5 cut(s) 149, 170, 178, 666, 1089
BciVI GTATCC 2 cut(s) 801, 944
BcnI CCSGG 3 cut(s) 128, 895, 896
BfaI CTAG 2 cut(s) 459, 1002
BfmI CTRYAG 1 cut(s) 903
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 2 cut(s) 801, 944
BglII AGATCT 1 cut(s) 709
BisI GCNGC 5 cut(s) 34, 96, 146, 515, 1067
BlsI GCNGC 5 cut(s) 35, 97, 147, 516, 1068
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 3 cut(s) 128, 895, 896
Bme18I GGWCC 3 cut(s) 400, 815, 987
BmeT110I CYCGRG 2 cut(s) 206, 894
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 5 cut(s) 75, 76, 400, 815, 987
BmiI GGNNCC 4 cut(s) 77, 361, 900, 988
BmrFI CCNGG 3 cut(s) 128, 895, 896
BmsI GCATC 2 cut(s) 826, 1078
BpiI GAAGAC 1 cut(s) 743
BplI GAGNNNNNCTC 2 cut(s) 587, 619
BpmI CTGGAG 1 cut(s) 589
Bpu10I CCTNAGC 1 cut(s) 729
BpuMI CCSGG 3 cut(s) 128, 895, 896
BsaJI CCNNGG 4 cut(s) 34, 873, 893, 894
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 3 cut(s) 959, 1007, 1042
Bse118I RCCGGY 3 cut(s) 19, 181, 487
Bse1I ACTGG 4 cut(s) 403, 606, 765, 768
BseDI CCNNGG 4 cut(s) 34, 873, 893, 894
BseGI GGATG 3 cut(s) 145, 934, 1081
BseLI CCNNNNNNNGG 3 cut(s) 959, 1007, 1042
BseMII CTCAG 5 cut(s) 131, 249, 260, 560, 720
BseNI ACTGG 4 cut(s) 403, 606, 765, 768
BseSI GKGCMC 2 cut(s) 79, 171
BseX3I CGGCCG 1 cut(s) 183
BseXI GCAGC 3 cut(s) 157, 526, 1053
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 3 cut(s) 28, 36, 70
Bsh1285I CGRYCG 2 cut(s) 127, 186
BshFI GGCC 4 cut(s) 33, 77, 185, 1046
BshNI GGYRCC 1 cut(s) 359
BshTI ACCGGT 1 cut(s) 487
BsiEI CGRYCG 2 cut(s) 127, 186
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 206, 894
BsiSI CCGG 7 cut(s) 20, 59, 127, 182, 363, 488, 895
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 959, 1007, 1042
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 4 cut(s) 33, 77, 185, 1046
BsoBI CYCGRG 2 cut(s) 206, 894
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 4 cut(s) 79, 118, 171, 901
Bsp1407I TGTACA 1 cut(s) 883
Bsp143I GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
BspACI CCGC 7 cut(s) 34, 36, 96, 157, 171, 211, 517
BspANI GGCC 4 cut(s) 33, 77, 185, 1046
BspCNI CTCAG 5 cut(s) 130, 248, 259, 561, 721
BspFNI CGCG 3 cut(s) 28, 36, 70
BspLI GGNNCC 4 cut(s) 77, 361, 900, 988
BspPI GGATC 2 cut(s) 837, 884
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 211
BsrFI RCCGGY 3 cut(s) 19, 181, 487
BsrGI TGTACA 1 cut(s) 883
BsrI ACTGG 4 cut(s) 403, 606, 765, 768
BssAI RCCGGY 3 cut(s) 19, 181, 487
BssECI CCNNGG 4 cut(s) 34, 873, 893, 894
BssMI GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
Bst4CI ACNGT 2 cut(s) 359, 443
BstAUI TGTACA 1 cut(s) 883
BstC8I GCNNGC 7 cut(s) 114, 171, 175, 179, 183, 841, 1044
BstDEI CTNAG 7 cut(s) 117, 235, 246, 569, 729, 939, 1061
BstDSI CCRYGG 2 cut(s) 34, 873
BstENI CCTNNNNNAGG 1 cut(s) 1040
BstF5I GGATG 3 cut(s) 145, 934, 1081
BstFNI CGCG 3 cut(s) 28, 36, 70
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 70, 353
BstKTI GATC 8 cut(s) 46, 325, 577, 670, 712, 757, 832, 892
BstMBI GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
BstMCI CGRYCG 2 cut(s) 127, 186
BstMWI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
BstNSI RCATGY 2 cut(s) 288, 843
BstSCI CCNGG 3 cut(s) 126, 893, 894
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 79, 171
BstUI CGCG 3 cut(s) 28, 36, 70
BstV1I GCAGC 3 cut(s) 157, 526, 1053
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 3 cut(s) 709, 829, 889
BstYI RGATCY 3 cut(s) 709, 829, 889
BstZI CGGCCG 1 cut(s) 183
BsuI GTATCC 2 cut(s) 801, 944
BsuRI GGCC 4 cut(s) 33, 77, 185, 1046
BtgI CCRYGG 2 cut(s) 34, 873
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 3 cut(s) 145, 934, 1081
BtsIMutI CAGTG 3 cut(s) 448, 613, 1047
Cac8I GCNNGC 7 cut(s) 114, 171, 175, 179, 183, 841, 1044
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 2 cut(s) 70, 353
Cfr10I RCCGGY 3 cut(s) 19, 181, 487
Cfr13I GGNCC 5 cut(s) 75, 76, 400, 815, 987
Cfr42I CCGCGG 1 cut(s) 37
Cfr9I CCCGGG 1 cut(s) 894
CseI GACGC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 250, 282, 406, 884
CspAI ACCGGT 1 cut(s) 487
CviAII CATG 4 cut(s) 285, 786, 840, 925
CviQI GTAC 4 cut(s) 250, 282, 406, 884
DdeI CTNAG 7 cut(s) 117, 235, 246, 569, 729, 939, 1061
DpnI GATC 8 cut(s) 45, 324, 576, 669, 711, 756, 831, 891
DpnII GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
DraI TTTAAA 1 cut(s) 825
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 2 cut(s) 31, 183
EagI CGGCCG 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 116
EclXI CGGCCG 1 cut(s) 183
Eco24I GRGCYC 3 cut(s) 79, 118, 901
Eco47I GGWCC 3 cut(s) 400, 815, 987
Eco47III AGCGCT 1 cut(s) 352
Eco52I CGGCCG 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 755, 1084
Eco88I CYCGRG 2 cut(s) 206, 894
EcoICRI GAGCTC 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 1040
EcoO109I RGGNCCY 2 cut(s) 75, 987
EcoT22I ATGCAT 1 cut(s) 841
EcoT38I GRGCYC 3 cut(s) 79, 118, 901
FaeI CATG 4 cut(s) 288, 789, 843, 928
FaiI YATR 8 cut(s) 286, 411, 563, 787, 841, 853, 926, 973
FalI AAGNNNNNCTT 2 cut(s) 932, 964
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 284, 785, 839, 924
FauI CCCGC 2 cut(s) 150, 178
Fnu4HI GCNGC 5 cut(s) 34, 96, 146, 515, 1067
FokI GGATG 3 cut(s) 152, 941, 1068
FriOI GRGCYC 3 cut(s) 79, 118, 901
Fsp4HI GCNGC 5 cut(s) 34, 96, 146, 515, 1067
FspBI CTAG 2 cut(s) 459, 1002
GlaI GCGC 2 cut(s) 69, 352
GluI GCNGC 5 cut(s) 34, 96, 146, 515, 1067
GsuI CTGGAG 1 cut(s) 589
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 4 cut(s) 33, 77, 185, 1046
HapII CCGG 7 cut(s) 20, 59, 127, 182, 363, 488, 895
HgaI GACGC 1 cut(s) 34
HhaI GCGC 2 cut(s) 70, 353
Hin1II CATG 4 cut(s) 288, 789, 843, 928
Hin6I GCGC 2 cut(s) 68, 351
HinP1I GCGC 2 cut(s) 68, 351
HinfI GANTC 5 cut(s) 332, 455, 520, 805, 997
HpaII CCGG 7 cut(s) 20, 59, 127, 182, 363, 488, 895
HphI GGTGA 3 cut(s) 34, 332, 629
Hpy166II GTNNAC 2 cut(s) 620, 996
Hpy188I TCNGA 7 cut(s) 120, 139, 375, 427, 570, 918, 983
Hpy188III TCNNGA 5 cut(s) 206, 452, 728, 833, 1085
Hpy8I GTNNAC 2 cut(s) 620, 996
Hpy99I CGWCG 3 cut(s) 199, 268, 1110
HpyCH4III ACNGT 2 cut(s) 359, 443
HpyCH4IV ACGT 2 cut(s) 291, 664
HpyCH4V TGCA 6 cut(s) 145, 220, 785, 839, 1042, 1069
HpyF10VI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
HpyF3I CTNAG 7 cut(s) 117, 235, 246, 569, 729, 939, 1061
HpySE526I ACGT 2 cut(s) 291, 664
Hsp92II CATG 4 cut(s) 288, 789, 843, 928
HspAI GCGC 2 cut(s) 68, 351
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
LmnI GCTCC 4 cut(s) 348, 511, 608, 904
Lsp1109I GCAGC 3 cut(s) 157, 526, 1053
LweI GCATC 2 cut(s) 826, 1078
MaeI CTAG 2 cut(s) 459, 1002
MaeII ACGT 2 cut(s) 291, 664
MaeIII GTNAC 6 cut(s) 22, 287, 389, 437, 907, 920
MalI GATC 8 cut(s) 45, 324, 576, 669, 711, 756, 831, 891
MbiI CCGCTC 1 cut(s) 211
MboI GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
MboII GAAGA 4 cut(s) 53, 662, 748, 1090
MflI RGATCY 3 cut(s) 709, 829, 889
MhlI GDGCHC 4 cut(s) 79, 118, 171, 901
MluCI AATT 5 cut(s) 446, 540, 628, 795, 1022
MluI ACGCGT 1 cut(s) 26
MlyI GAGTC 2 cut(s) 341, 991
MmeI TCCRAC 3 cut(s) 117, 752, 833
Mph1103I ATGCAT 1 cut(s) 841
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 2 cut(s) 492, 824
MspA1I CMGCKG 3 cut(s) 36, 173, 517
MspI CCGG 7 cut(s) 20, 59, 127, 182, 363, 488, 895
MspR9I CCNGG 3 cut(s) 128, 895, 896
MvnI CGCG 3 cut(s) 28, 36, 70
MwoI GCNNNNNNNGC 7 cut(s) 25, 74, 109, 154, 170, 217, 359
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 3 cut(s) 128, 895, 896
NdeII GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 4 cut(s) 288, 789, 843, 928
NlaIV GGNNCC 4 cut(s) 77, 361, 900, 988
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 5 cut(s) 22, 287, 389, 437, 920
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 2 cut(s) 288, 843
PaeI GCATGC 1 cut(s) 843
PaeR7I CTCGAG 1 cut(s) 206
PciI ACATGT 1 cut(s) 284
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 455, 520, 805
PflFI GACNNNGTC 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 487
PkrI GCNGC 5 cut(s) 35, 97, 147, 516, 1068
PleI GAGTC 2 cut(s) 340, 991
PpsI GAGTC 2 cut(s) 340, 991
PpuMI RGGWCCY 1 cut(s) 987
PscI ACATGT 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 987
PspN4I GGNNCC 4 cut(s) 77, 361, 900, 988
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 5 cut(s) 75, 76, 400, 815, 987
PspPPI RGGWCCY 1 cut(s) 987
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 3 cut(s) 709, 829, 889
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 4 cut(s) 251, 283, 407, 885
RsaNI GTAC 4 cut(s) 250, 282, 406, 884
SacI GAGCTC 1 cut(s) 118
SacII CCGCGG 1 cut(s) 37
SaqAI TTAA 2 cut(s) 492, 824
SatI GCNGC 5 cut(s) 34, 96, 146, 515, 1067
Sau3AI GATC 8 cut(s) 43, 322, 574, 667, 709, 754, 829, 889
Sau96I GGNCC 5 cut(s) 75, 76, 400, 815, 987
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 2 cut(s) 341, 991
ScrFI CCNGG 3 cut(s) 128, 895, 896
SduI GDGCHC 4 cut(s) 79, 118, 171, 901
SfaNI GCATC 2 cut(s) 826, 1078
SfcI CTRYAG 1 cut(s) 903
Sfr274I CTCGAG 1 cut(s) 206
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 400, 815, 987
SlaI CTCGAG 1 cut(s) 206
SmaI CCCGGG 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
SphI GCATGC 1 cut(s) 843
Sse9I AATT 5 cut(s) 446, 540, 628, 795, 1022
SsiI CCGC 7 cut(s) 34, 36, 96, 157, 171, 211, 517
SspI AATATT 1 cut(s) 503
SspMI CTAG 2 cut(s) 459, 1002
SstI GAGCTC 1 cut(s) 118
StyD4I CCNGG 3 cut(s) 126, 893, 894
TaaI ACNGT 2 cut(s) 359, 443
TaiI ACGT 2 cut(s) 294, 667
TaqI TCGA 4 cut(s) 197, 207, 533, 1108
TasI AATT 5 cut(s) 446, 540, 628, 795, 1022
TatI WGTACW 3 cut(s) 281, 405, 883
TauI GCSGC 2 cut(s) 36, 98
TfiI GAWTC 3 cut(s) 455, 520, 805
Tru1I TTAA 2 cut(s) 492, 824
Tru9I TTAA 2 cut(s) 492, 824
TscAI CASTG 3 cut(s) 448, 613, 1054
TseFI GTSAC 5 cut(s) 22, 287, 389, 437, 920
TseI GCWGC 3 cut(s) 145, 514, 1066
Tsp45I GTSAC 5 cut(s) 22, 287, 389, 437, 920
TspDTI ATGAA 1 cut(s) 960
TspMI CCCGGG 1 cut(s) 894
TspRI CASTG 3 cut(s) 448, 613, 1054
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 3 cut(s) 400, 815, 987
XagI CCTNNNNNAGG 1 cut(s) 1040
XapI RAATTY 3 cut(s) 446, 540, 628
XceI RCATGY 2 cut(s) 288, 843
XhoI CTCGAG 1 cut(s) 206
XmaI CCCGGG 1 cut(s) 894
XspI CTAG 2 cut(s) 459, 1002
ZrmI AGTACT 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.