Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002285.1

Orthogroup ID

OG0011457

Physical Location & Seq

Genomic Coordinates Reverse (-)

39645 .. 40637

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002285.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgccgacgctgaacctgttcacgaatgttccagtggatgcagtgatagcctctgacattctcaaggacgctaccaaagccgtcgccaaaatcatcggcaaacccgagtcctatgtgatgattttgctcaatgggagcgtgccgattgcgtttgccggcacggaagagcccgctgcgtatggggagttgatctccattgggggtattggacccagtgttaatgggaagctgagttcaactattgcggagattctggagaccaagctttccatagatagctcccgcttctacatcaaattttatgacgttcagcggccatttttcggctttaacggctcaacattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00350 ko00360 map00350 map00360

Pfam Domains

Protein Families

MIF

Protein Analysis

115

Amino Acids

12.28

Weight (kDa)

4.96

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57170 AT5G57170
fragaria_vesca	FvH4_4g07201
malus_domestica	MD16G1248200.v1.1
prunus_persica	Prupe.1G074700_v2.0.a1 Prupe.1G074700_v2.0.a1 Prupe.1G074700_v2.0.a1 Prupe.1G074700_v2.0.a1 Prupe.1G074700_v2.0.a1
pyrus_communis	pycom13g21330
rosa_chinensis	RchiOBHm_Chr4g0399451
rosa_laevigata	RLG00000009267
rosa_multiflora	Rmu_co7973076.1_g000001 Rmu_sc0002285.1_g000007
rosa_rugosa	Rorug04G0017000
rosa_samantha	Rh4AG094800 Rh4BG092100 Rh4CG103000 Rh4DG087000
rosa_wichuraiana	Rw4G007790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	171, 245, 283, 313
AcoI	YGGCCR	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	237
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	3 cut(s)	229, 265, 279
AluI	AGCT	3 cut(s)	229, 265, 279
Alw26I	GTCTC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	171
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	174, 314
BlsI	GCNGC	2 cut(s)	175, 315
Bme18I	GGWCC	1 cut(s)	209
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	211
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	28
BmuI	ACTGGG	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	32, 213
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	32, 213
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	316
Bso31I	GGTCTC	1 cut(s)	251
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	4 cut(s)	171, 245, 283, 313
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	32, 213
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	1 cut(s)	189
Bst6I	CTCTTC	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	140, 157, 171
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	192
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 77, 333
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	39, 48, 220
Cac8I	GCNNGC	3 cut(s)	140, 157, 171
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	209
CseI	GACGC	2 cut(s)	16, 77
CviJI	RGCY	9 cut(s)	50, 80, 169, 229, 265, 279, 316, 327, 336
CviKI_1	RGCY	9 cut(s)	50, 80, 169, 229, 265, 279, 316, 327, 336
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
EaeI	YGGCCR	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	209
Eco88I	CYCGRG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	171
FaiI	YATR	4 cut(s)	114, 180, 272, 303
FauI	CCCGC	2 cut(s)	178, 290
Fnu4HI	GCNGC	2 cut(s)	174, 314
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	174, 314
GluI	GCNGC	2 cut(s)	174, 314
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	316
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	16, 77
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	107, 250
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	55, 347
Hpy188III	TCNNGA	2 cut(s)	22, 254
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	10, 86
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 77, 333
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	306
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	189
LguI	GCTCTTC	1 cut(s)	159
LmnI	GCTCC	2 cut(s)	135, 284
LpnPI	CCDG	5 cut(s)	29, 45, 169, 226, 239
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	306
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	219, 330
MspA1I	CMGCKG	2 cut(s)	173, 313
MspI	CCGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	47, 77, 333
NaeI	GCCGGC	1 cut(s)	157
NdeII	GATC	1 cut(s)	189
NgoMIV	GCCGGC	1 cut(s)	155
NlaIV	GGNNCC	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	175, 315
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	219, 330
SatI	GCNGC	2 cut(s)	174, 314
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	18, 231, 267, 281, 309
SfaNI	GCATC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	296
SsiI	CCGC	4 cut(s)	171, 245, 283, 313
TaiI	ACGT	1 cut(s)	309
TasI	AATT	1 cut(s)	296
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	219, 330
Tru9I	TTAA	2 cut(s)	219, 330
TscAI	CASTG	3 cut(s)	39, 48, 220
TseI	GCWGC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	39, 48, 220
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.