Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002416.1

Orthogroup ID

OG0018869

Physical Location & Seq

Genomic Coordinates Reverse (-)

42121 .. 45578

Gene Structure 3458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgcaggaacggcttcctgagatccctcccttcttcaccactgtcctccctgaaacccagcggccgctcgcactctcaccacccttttcagccgccatctcctccactaccagcccgctcttcctcgtggtcctcggcgaccacccagggggtactaaatctacttacaggaacatacttctaccaacgcctggtcttcgtcttattctcaaaggttcaccttcccctaaccctaaacctaccaagaccttccctgatcttatccaaacaacggctttcccaagatgcttgaaggttcgagaatctagggttttggtacctgttatgagagcaagcgttggcccctacaatgaaaattgtggaagacgtgaccactggaagagatcagtggtgcaaaatcaatctgagctagttccggcggcagaagcgtccacaaataagagctccctgatgaaatttgctgattctatttggtcatttgttttcggcgacggtaatccaaacaaaggagttcatgaagagaagagatggaagttcgttgagcaatacataacctccaagggtggtgttatagcagccgaagagcttgctccctatcttgatggtttagaaacttcagggaaaattgagggcaacccaatcaatgaggaaaagttcatgttacctgttctaaaaagatatgagggccatcctgtaactgatgaagatgggaacgttctttaccggtttacgccactgtccaaagataaggaattgcttgacattgagcataaattcttcatcgagaaaaaatggcaattcaccagaaccggttccagaccaacgcaattactctctgcaaattcagtcacccccttgggtcttcaaaggtgccttgaactcaacgagccattggaacccctaaattcactcagagccttgaggcgctctcacgccggtcagatcttccaacccatttccacaaaacagtttgtgaactcgctttggcttgaggacatgcacgtggagtggaagacagatccaatccatatcggtcagtttcagtatggtgtttgtcaaactcggttgaggtggaaggttgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008198 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016226 GO:0019538 GO:0022607 GO:0031163 GO:0031967 GO:0031974 GO:0031975 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048037 GO:0051186 GO:0051536 GO:0051537 GO:0051540 GO:0051604 GO:0070013 GO:0071704 GO:0071840 GO:0097428 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

40.82

Weight (kDa)

9.14

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018869)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g48680
rosa_laevigata	RLG00000021789
rosa_multiflora	Rmu_sc0002416.1_g000012
rosa_roxburghii	Rroxscaffold_2G00082860
rosa_rugosa	Rorug02G0534200
rosa_samantha	Rh2AG604600 Rh2BG617600 Rh2CG585800 Rh2DG628200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	2 cut(s)	316, 870
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccBSI	CCGCTC	2 cut(s)	67, 118
AciI	CCGC	5 cut(s)	61, 65, 93, 116, 419
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	2 cut(s)	16, 1013
AcoI	YGGCCR	1 cut(s)	62
AcsI	RAATTY	4 cut(s)	455, 773, 841, 904
AcuI	CTGAAG	1 cut(s)	600
AcvI	CACGTG	1 cut(s)	1003
AfaI	GTAC	2 cut(s)	154, 318
AfiI	CCNNNNNNNGG	4 cut(s)	148, 191, 271, 506
AgeI	ACCGGT	2 cut(s)	723, 809
AgsI	TTSAA	3 cut(s)	292, 866, 878
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	145, 190
AluBI	AGCT	3 cut(s)	409, 444, 586
AluI	AGCT	3 cut(s)	409, 444, 586
Alw21I	GWGCWC	1 cut(s)	446
AlwI	GGATC	2 cut(s)	16, 1013
AoxI	GGCC	3 cut(s)	62, 340, 685
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	4 cut(s)	455, 773, 841, 904
AsiGI	ACCGGT	2 cut(s)	723, 809
Asp700I	GAANNNNTTC	2 cut(s)	12, 811
Asp718I	GGTACC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	130, 341, 685
AsuHPI	GGTGA	5 cut(s)	28, 69, 210, 793, 841
AvaII	GGWCC	1 cut(s)	130
BanI	GGYRCC	2 cut(s)	316, 870
BanII	GRGCYC	1 cut(s)	446
BauI	CACGAG	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	1003
BbsI	GAAGAC	4 cut(s)	188, 370, 854, 1019
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	5 cut(s)	104, 522, 596, 696, 701
BceAI	ACGGC	2 cut(s)	26, 288
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	2 cut(s)	147, 192
BfaI	CTAG	2 cut(s)	306, 410
BfoI	RGCGCY	1 cut(s)	928
BglII	AGATCT	1 cut(s)	942
BisI	GCNGC	5 cut(s)	62, 65, 93, 420, 576
BlsI	GCNGC	5 cut(s)	63, 66, 94, 421, 577
Bme1390I	CCNGG	2 cut(s)	147, 192
Bme18I	GGWCC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	3 cut(s)	130, 341, 685
BmiI	GGNNCC	5 cut(s)	318, 343, 814, 872, 897
BmrFI	CCNGG	2 cut(s)	147, 192
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	4 cut(s)	188, 370, 854, 1019
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
BpuEI	CTTGAG	2 cut(s)	940, 1010
BsaAI	YACGTR	1 cut(s)	1003
BsaJI	CCNNGG	5 cut(s)	133, 145, 146, 558, 855
BsaWI	WCCGGW	2 cut(s)	723, 809
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 191, 271, 506
Bse118I	RCCGGY	3 cut(s)	723, 809, 935
Bse1I	ACTGG	1 cut(s)	380
BseBI	CCWGG	2 cut(s)	147, 192
BseDI	CCNNGG	5 cut(s)	133, 145, 146, 558, 855
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	4 cut(s)	148, 191, 271, 506
BseMII	CTCAG	3 cut(s)	9, 396, 925
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	91
BseX3I	CGGCCG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	587
BseYI	CCCAGC	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	3 cut(s)	64, 342, 687
BshNI	GGYRCC	2 cut(s)	316, 870
BshTI	ACCGGT	2 cut(s)	723, 809
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	416, 724, 810, 936
BslI	CCNNNNNNNGG	4 cut(s)	148, 191, 271, 506
BsnI	GGCC	3 cut(s)	64, 342, 687
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	5 cut(s)	21, 256, 383, 942, 1018
BspACI	CCGC	5 cut(s)	61, 65, 93, 116, 419
BspANI	GGCC	3 cut(s)	64, 342, 687
BspCNI	CTCAG	3 cut(s)	10, 397, 924
BspHI	TCATGA	1 cut(s)	514
BspLI	GGNNCC	5 cut(s)	318, 343, 814, 872, 897
BspPI	GGATC	2 cut(s)	16, 1013
BspQI	GCTCTTC	2 cut(s)	125, 576
BspT107I	GGYRCC	2 cut(s)	316, 870
BsrBI	CCGCTC	2 cut(s)	67, 118
BsrFI	RCCGGY	3 cut(s)	723, 809, 935
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	3 cut(s)	723, 809, 935
BssECI	CCNNGG	5 cut(s)	133, 145, 146, 558, 855
BssMI	GATC	5 cut(s)	21, 256, 383, 942, 1018
BssSI	CACGAG	1 cut(s)	125
BssT1I	CCWWGG	2 cut(s)	558, 855
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	147, 192
Bst4CI	ACNGT	4 cut(s)	43, 494, 738, 969
Bst6I	CTCTTC	5 cut(s)	125, 374, 513, 518, 576
BstBAI	YACGTR	1 cut(s)	1003
BstC8I	GCNNGC	4 cut(s)	69, 116, 334, 588
BstDEI	CTNAG	3 cut(s)	18, 405, 911
BstF5I	GGATG	1 cut(s)	688
BstH2I	RGCGCY	1 cut(s)	928
BstHHI	GCGC	1 cut(s)	927
BstKTI	GATC	5 cut(s)	24, 259, 386, 945, 1021
BstMBI	GATC	5 cut(s)	21, 256, 383, 942, 1018
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 425
BstNI	CCWGG	2 cut(s)	147, 192
BstNSI	RCATGY	1 cut(s)	1000
BstSCI	CCNGG	2 cut(s)	145, 190
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	4 cut(s)	188, 370, 854, 1019
BstX2I	RGATCY	3 cut(s)	21, 942, 1018
BstYI	RGATCY	3 cut(s)	21, 942, 1018
BstZI	CGGCCG	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	64, 342, 687
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	4 cut(s)	39, 373, 393, 734
Cac8I	GCNNGC	4 cut(s)	69, 116, 334, 588
CciI	TCATGA	1 cut(s)	514
CciNI	GCGGCCGC	1 cut(s)	62
CfoI	GCGC	1 cut(s)	927
Cfr10I	RCCGGY	3 cut(s)	723, 809, 935
Cfr13I	GGNCC	3 cut(s)	130, 341, 685
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	153, 317
CspAI	ACCGGT	2 cut(s)	723, 809
CviAII	CATG	3 cut(s)	515, 658, 997
CviQI	GTAC	2 cut(s)	153, 317
DdeI	CTNAG	3 cut(s)	18, 405, 911
DpnI	GATC	5 cut(s)	23, 258, 385, 944, 1020
DpnII	GATC	5 cut(s)	21, 256, 383, 942, 1018
EaeI	YGGCCR	1 cut(s)	62
EagI	CGGCCG	1 cut(s)	62
Eam1104I	CTCTTC	5 cut(s)	125, 374, 513, 518, 576
EarI	CTCTTC	5 cut(s)	125, 374, 513, 518, 576
Ecl136II	GAGCTC	1 cut(s)	444
EclXI	CGGCCG	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	558, 855
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	130
Eco52I	CGGCCG	1 cut(s)	62
Eco53kI	GAGCTC	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	600
Eco72I	CACGTG	1 cut(s)	1003
EcoICRI	GAGCTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	145, 190
EcoT14I	CCWWGG	2 cut(s)	558, 855
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	2 cut(s)	558, 855
FaeI	CATG	3 cut(s)	518, 661, 1000
FatI	CATG	3 cut(s)	514, 657, 996
FauI	CCCGC	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	62, 65, 93, 420, 576
FokI	GGATG	1 cut(s)	675
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	5 cut(s)	62, 65, 93, 420, 576
FspBI	CTAG	2 cut(s)	306, 410
GlaI	GCGC	1 cut(s)	926
GluI	GCNGC	5 cut(s)	62, 65, 93, 420, 576
GsaI	CCCAGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	928
HaeIII	GGCC	3 cut(s)	64, 342, 687
HapII	CCGG	4 cut(s)	416, 724, 810, 936
HgaI	GACGC	1 cut(s)	417
HhaI	GCGC	1 cut(s)	927
Hin1II	CATG	3 cut(s)	518, 661, 1000
Hin6I	GCGC	1 cut(s)	925
HinP1I	GCGC	1 cut(s)	925
HinfI	GANTC	2 cut(s)	302, 464
HpaII	CCGG	4 cut(s)	416, 724, 810, 936
HphI	GGTGA	5 cut(s)	28, 69, 210, 793, 841
Hpy166II	GTNNAC	4 cut(s)	218, 432, 729, 976
Hpy188I	TCNGA	3 cut(s)	406, 914, 942
Hpy188III	TCNNGA	6 cut(s)	17, 299, 515, 599, 784, 816
Hpy8I	GTNNAC	4 cut(s)	218, 432, 729, 976
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	5 cut(s)	40, 231, 259, 286, 1069
HpyCH4III	ACNGT	4 cut(s)	43, 494, 738, 969
HpyCH4IV	ACGT	3 cut(s)	367, 714, 1002
HpyCH4V	TGCA	5 cut(s)	4, 394, 839, 1000, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 425
HpyF3I	CTNAG	3 cut(s)	18, 405, 911
HpySE526I	ACGT	3 cut(s)	367, 714, 1002
Hsp92II	CATG	3 cut(s)	518, 661, 1000
HspAI	GCGC	1 cut(s)	925
KpnI	GGTACC	1 cut(s)	320
Kzo9I	GATC	5 cut(s)	21, 256, 383, 942, 1018
LguI	GCTCTTC	2 cut(s)	125, 576
LmnI	GCTCC	2 cut(s)	449, 595
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	2 cut(s)	306, 410
MaeII	ACGT	3 cut(s)	367, 714, 1002
MaeIII	GTNAC	4 cut(s)	368, 660, 694, 847
MalI	GATC	5 cut(s)	23, 258, 385, 944, 1020
MbiI	CCGCTC	2 cut(s)	67, 118
MboI	GATC	5 cut(s)	21, 256, 383, 942, 1018
MflI	RGATCY	3 cut(s)	21, 942, 1018
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	9 cut(s)	355, 455, 624, 752, 773, 797, 827, 841, 904
MmeI	TCCRAC	1 cut(s)	973
MroXI	GAANNNNTTC	2 cut(s)	12, 811
MslI	CAYNNNNRTG	1 cut(s)	1001
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	4 cut(s)	416, 724, 810, 936
MspR9I	CCNGG	2 cut(s)	147, 192
MvaI	CCWGG	2 cut(s)	147, 192
MwoI	GCNNNNNNNGC	2 cut(s)	10, 425
NdeII	GATC	5 cut(s)	21, 256, 383, 942, 1018
NlaIII	CATG	3 cut(s)	518, 661, 1000
NlaIV	GGNNCC	5 cut(s)	318, 343, 814, 872, 897
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	2 cut(s)	368, 847
NotI	GCGGCCGC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	1000
PagI	TCATGA	1 cut(s)	514
PasI	CCCWGGG	1 cut(s)	146
PciSI	GCTCTTC	2 cut(s)	125, 576
PdmI	GAANNNNTTC	2 cut(s)	12, 811
PfeI	GAWTC	2 cut(s)	302, 464
PflMI	CCANNNNNTGG	1 cut(s)	191
PinAI	ACCGGT	2 cut(s)	723, 809
PkrI	GCNGC	5 cut(s)	63, 66, 94, 421, 577
PmaCI	CACGTG	1 cut(s)	1003
PmlI	CACGTG	1 cut(s)	1003
Ppu21I	YACGTR	1 cut(s)	1003
Psp124BI	GAGCTC	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	145, 190
PspCI	CACGTG	1 cut(s)	1003
PspFI	CCCAGC	1 cut(s)	57
PspGI	CCWGG	2 cut(s)	145, 190
PspN4I	GGNNCC	5 cut(s)	318, 343, 814, 872, 897
PspPI	GGNCC	3 cut(s)	130, 341, 685
PsrI	GAACNNNNNNTAC	2 cut(s)	704, 736
PsuI	RGATCY	3 cut(s)	21, 942, 1018
RsaI	GTAC	2 cut(s)	154, 318
RsaNI	GTAC	2 cut(s)	153, 317
RseI	CAYNNNNRTG	1 cut(s)	1001
SacI	GAGCTC	1 cut(s)	446
SapI	GCTCTTC	2 cut(s)	125, 576
SatI	GCNGC	5 cut(s)	62, 65, 93, 420, 576
Sau3AI	GATC	5 cut(s)	21, 256, 383, 942, 1018
Sau96I	GGNCC	3 cut(s)	130, 341, 685
ScrFI	CCNGG	2 cut(s)	147, 192
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	1 cut(s)	275
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	2 cut(s)	919, 989
SmoI	CTYRAG	2 cut(s)	919, 989
Sse9I	AATT	9 cut(s)	355, 455, 624, 752, 773, 797, 827, 841, 904
SsiI	CCGC	5 cut(s)	61, 65, 93, 116, 419
SspMI	CTAG	2 cut(s)	306, 410
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	145, 190
StyI	CCWWGG	2 cut(s)	558, 855
TaaI	ACNGT	4 cut(s)	43, 494, 738, 969
TaiI	ACGT	3 cut(s)	370, 717, 1005
TaqI	TCGA	2 cut(s)	298, 783
TaqII	GACCGA	1 cut(s)	1022
TasI	AATT	9 cut(s)	355, 455, 624, 752, 773, 797, 827, 841, 904
TauI	GCSGC	4 cut(s)	64, 67, 95, 422
TfiI	GAWTC	2 cut(s)	302, 464
TscAI	CASTG	4 cut(s)	46, 380, 393, 741
TseFI	GTSAC	2 cut(s)	368, 847
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	2 cut(s)	368, 847
TspDTI	ATGAA	7 cut(s)	366, 467, 503, 531, 646, 717, 769
TspRI	CASTG	4 cut(s)	46, 380, 393, 741
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	4 cut(s)	455, 773, 841, 904
XceI	RCATGY	1 cut(s)	1000
XmnI	GAANNNNTTC	2 cut(s)	12, 811
XspI	CTAG	2 cut(s)	306, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.