Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0015667

Physical Location & Seq

Genomic Coordinates Forward (+)

179981 .. 181386

Gene Structure 1406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggaggacagaattcttagagagtatataacaactcatggtgaaggcaaatggagaaaccttcccaaaagagcagggcttaagagatgtggaaagagttgcagattacgatggttgaactatctaagacctgatatcaagagaggaaacatcactcgggatgaagaagagctcattatccggcttcataagctcttgggaaacagatggtctttgatagcgggaaggcttcctggccgaacagacaatgaaatcaagaattactggaacacaaatattgggaagaaagttcaagatcactcatccactaattctgaagccaatattactcaccgcaaaccaccaaatcatcaaacccagcaaaagaacacaaacgtcgtccgtaccaaggcatcaaggtgcaccaaagtgttcattccccacctgtcacaaatggatgaagagaataatcctactgttcaacaagttgctgcacctttcttgaatcatgactattatgaccaggtcaacaataatgatgatccaccgctggggatgatggggactggtactgatcaccaaccagctgatgatttgcccccattccttaatttggagattgatgatgaaaacagtaattcttgcgggtttatggtagattttaagatggacgagagctttctgtcggagtttctcaacgtcgatttttctcagctctacagtagtactagtactgctaatggaggagatggtgttaaagctgctattagtaccagttgtggagacgataatcatcataagctgcatggcccagatttccaatcatccatggctcctatcctcgactctgaattggactggctctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

282

Amino Acids

32.08

Weight (kDa)

5.99

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 42	6.5e-11	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	2 - 57	2.4e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	48 - 92	1.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	52 - 99	1.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0015667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g34650 FvH4_6g34650 FvH4_6g34650
malus_domestica	MD09G1184000.v1.1
prunus_persica	Prupe.3G042300_v2.0.a1
pyrus_communis	pycom09g10150
rosa_chinensis	RchiOBHm_Chr2g0145191
rosa_laevigata	RLG00000020132
rosa_multiflora	Rmu_sc0002506.1_g000040
rosa_roxburghii	Rroxscaffold_2G00100810
rosa_rugosa	Rorug02G0391000
rosa_samantha	Rh2AG443600 Rh2BG454600 Rh2CG430600 Rh2DG464700
rosa_wichuraiana	Rw2G036280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	221, 334, 527, 624
AclWI	GGATC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	5 cut(s)	385, 550, 706, 712, 751
AfiI	CCNNNNNNNGG	3 cut(s)	388, 530, 592
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	118, 293, 461, 484
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	2 cut(s)	232, 501
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	7 cut(s)	172, 193, 566, 657, 694, 740, 781
AluI	AGCT	7 cut(s)	172, 193, 566, 657, 694, 740, 781
Alw21I	GWGCWC	2 cut(s)	174, 404
Alw26I	GTCTC	1 cut(s)	756
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	515
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	2 cut(s)	235, 787
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	3 cut(s)	470, 740, 781
ApoI	RAATTY	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	788
AsuHPI	GGTGA	3 cut(s)	53, 323, 548
AvaI	CYCGRG	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	404
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	174, 404
BbvI	GCAGC	3 cut(s)	457, 727, 768
BccI	CCATC	5 cut(s)	105, 201, 532, 640, 722
BciT130I	CCWGG	2 cut(s)	234, 503
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	756
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	1 cut(s)	708
BfmI	CTRYAG	1 cut(s)	697
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	471, 741, 782
BlsI	GCNGC	3 cut(s)	472, 742, 783
BmcAI	AGTACT	2 cut(s)	706, 712
Bme1390I	CCNGG	2 cut(s)	234, 503
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	788
BmiI	GGNNCC	1 cut(s)	813
BmrFI	CCNGG	2 cut(s)	234, 503
BmsI	GCATC	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	387, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 530, 592
Bse1I	ACTGG	4 cut(s)	269, 550, 753, 842
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	2 cut(s)	234, 503
BseDI	CCNNGG	2 cut(s)	387, 807
BseGI	GGATG	5 cut(s)	166, 302, 442, 540, 803
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	388, 530, 592
BseMII	CTCAG	1 cut(s)	704
BseNI	ACTGG	4 cut(s)	269, 550, 753, 842
BseRI	GAGGAG	1 cut(s)	738
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	3 cut(s)	457, 727, 768
BseYI	CCCAGC	2 cut(s)	357, 529
BsgI	GTGCAG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	237, 789
BsiHKAI	GWGCWC	2 cut(s)	174, 404
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	556
BslI	CCNNNNNNNGG	3 cut(s)	388, 530, 592
BsmAI	GTCTC	1 cut(s)	756
BsmBI	CGTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	556
BsnI	GGCC	2 cut(s)	237, 789
BsoBI	CYCGRG	1 cut(s)	156
Bsp1286I	GDGCHC	2 cut(s)	174, 404
Bsp143I	GATC	3 cut(s)	295, 520, 553
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	4 cut(s)	221, 334, 527, 624
BspANI	GGCC	2 cut(s)	237, 789
BspCNI	CTCAG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	813
BspPI	GGATC	1 cut(s)	515
BspQI	GCTCTTC	1 cut(s)	162
BspTI	CTTAAG	1 cut(s)	80
BsrI	ACTGG	4 cut(s)	269, 550, 753, 842
BssECI	CCNNGG	2 cut(s)	387, 807
BssMI	GATC	3 cut(s)	295, 520, 553
BssT1I	CCWWGG	2 cut(s)	387, 807
Bst2UI	CCWGG	2 cut(s)	234, 503
Bst4CI	ACNGT	3 cut(s)	457, 614, 701
Bst6I	CTCTTC	2 cut(s)	162, 435
BstAFI	CTTAAG	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	17, 125, 690
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	5 cut(s)	166, 302, 442, 540, 803
BstKTI	GATC	3 cut(s)	298, 523, 556
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	3 cut(s)	295, 520, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	2 cut(s)	234, 503
BstSCI	CCNGG	2 cut(s)	232, 501
BstSFI	CTRYAG	1 cut(s)	697
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	457, 727, 768
BsuRI	GGCC	2 cut(s)	237, 789
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	5 cut(s)	166, 302, 442, 540, 803
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	788
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	5 cut(s)	384, 549, 705, 711, 750
CviAII	CATG	4 cut(s)	38, 488, 785, 808
CviQI	GTAC	5 cut(s)	384, 549, 705, 711, 750
DdeI	CTNAG	3 cut(s)	17, 125, 690
DpnI	GATC	3 cut(s)	297, 522, 555
DpnII	GATC	3 cut(s)	295, 520, 553
EaeI	YGGCCR	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	162, 435
EarI	CTCTTC	2 cut(s)	162, 435
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	387, 807
Eco24I	GRGCYC	1 cut(s)	174
Eco32I	GATATC	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	232, 501
EcoRV	GATATC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	387, 807
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	2 cut(s)	387, 807
Esp3I	CGTCTC	1 cut(s)	756
FaeI	CATG	4 cut(s)	41, 491, 788, 811
FaqI	GGGAC	1 cut(s)	556
FatI	CATG	4 cut(s)	37, 487, 784, 807
FauI	CCCGC	2 cut(s)	214, 617
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	3 cut(s)	471, 741, 782
FokI	GGATG	5 cut(s)	173, 289, 449, 547, 790
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	3 cut(s)	471, 741, 782
FspBI	CTAG	1 cut(s)	708
GluI	GCNGC	3 cut(s)	471, 741, 782
GsaI	CCCAGC	2 cut(s)	361, 533
HaeIII	GGCC	2 cut(s)	237, 789
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	4 cut(s)	41, 491, 788, 811
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	2 cut(s)	484, 824
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	3 cut(s)	53, 323, 548
Hpy166II	GTNNAC	2 cut(s)	402, 508
Hpy188I	TCNGA	3 cut(s)	316, 667, 829
Hpy188III	TCNNGA	6 cut(s)	139, 158, 256, 293, 481, 488
Hpy8I	GTNNAC	2 cut(s)	402, 508
Hpy99I	CGWCG	2 cut(s)	380, 683
HpyAV	CCTTC	3 cut(s)	38, 71, 219
HpyCH4III	ACNGT	3 cut(s)	457, 614, 701
HpyCH4IV	ACGT	2 cut(s)	375, 678
HpyCH4V	TGCA	4 cut(s)	102, 402, 473, 784
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	3 cut(s)	17, 125, 690
HpySE526I	ACGT	2 cut(s)	375, 678
Hsp92II	CATG	4 cut(s)	41, 491, 788, 811
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	3 cut(s)	295, 520, 553
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	457, 727, 768
LweI	GCATC	1 cut(s)	401
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	1 cut(s)	708
MaeII	ACGT	2 cut(s)	375, 678
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	3 cut(s)	297, 522, 555
MboI	GATC	3 cut(s)	295, 520, 553
MboII	GAAGA	4 cut(s)	176, 179, 295, 452
MhlI	GDGCHC	2 cut(s)	174, 404
MluCI	AATT	6 cut(s)	12, 259, 310, 589, 616, 830
MlyI	GAGTC	1 cut(s)	818
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	3 cut(s)	137, 716, 830
MseI	TTAA	4 cut(s)	81, 588, 642, 735
MslI	CAYNNNNRTG	2 cut(s)	397, 407
MspA1I	CMGCKG	2 cut(s)	529, 566
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	234, 503
MvaI	CCWGG	2 cut(s)	234, 503
MwoI	GCNNNNNNNGC	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	3 cut(s)	295, 520, 553
NlaIII	CATG	4 cut(s)	41, 491, 788, 811
NlaIV	GGNNCC	1 cut(s)	813
NmuCI	GTSAC	1 cut(s)	426
OliI	CACNNNNGTG	1 cut(s)	407
PagI	TCATGA	1 cut(s)	487
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	484
PflFI	GACNNNGTC	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	472, 742, 783
PleI	GAGTC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	232, 501
PspFI	CCCAGC	2 cut(s)	357, 529
PspGI	CCWGG	2 cut(s)	232, 501
PspN4I	GGNNCC	1 cut(s)	813
PspPI	GGNCC	1 cut(s)	788
PsyI	GACNNNGTC	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	566
RsaI	GTAC	5 cut(s)	385, 550, 706, 712, 751
RsaNI	GTAC	5 cut(s)	384, 549, 705, 711, 750
RseI	CAYNNNNRTG	2 cut(s)	397, 407
SacI	GAGCTC	1 cut(s)	174
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	81, 588, 642, 735
SatI	GCNGC	3 cut(s)	471, 741, 782
Sau3AI	GATC	3 cut(s)	295, 520, 553
Sau96I	GGNCC	1 cut(s)	788
ScaI	AGTACT	2 cut(s)	706, 712
SchI	GAGTC	1 cut(s)	818
ScrFI	CCNGG	2 cut(s)	234, 503
SduI	GDGCHC	2 cut(s)	174, 404
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	401
SfcI	CTRYAG	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	397, 407
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	707
Sse9I	AATT	6 cut(s)	12, 259, 310, 589, 616, 830
SsiI	CCGC	4 cut(s)	221, 334, 527, 624
SspI	AATATT	2 cut(s)	277, 325
SspMI	CTAG	1 cut(s)	708
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	232, 501
StyI	CCWWGG	2 cut(s)	387, 807
TaaI	ACNGT	3 cut(s)	457, 614, 701
TaiI	ACGT	2 cut(s)	378, 681
TaqI	TCGA	2 cut(s)	681, 822
TasI	AATT	6 cut(s)	12, 259, 310, 589, 616, 830
TatI	WGTACW	2 cut(s)	704, 710
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	4 cut(s)	81, 588, 642, 735
Tru9I	TTAA	4 cut(s)	81, 588, 642, 735
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	3 cut(s)	470, 740, 781
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	6 cut(s)	176, 177, 264, 403, 453, 621
TspGWI	ACGGA	1 cut(s)	371
Tth111I	GACNNNGTC	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	80
VneI	GTGCAC	1 cut(s)	400
XapI	RAATTY	1 cut(s)	12
XspI	CTAG	1 cut(s)	708
ZrmI	AGTACT	2 cut(s)	706, 712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.