Rmu_sc0002532.1_g000034

PAN domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002532.1
OG0013446
Physical Location & Seq
Forward (+)
176384 .. 177880
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1497 bp
atggagactcatttcatcaactcagtaactcgtctacgtgcaactcagctccttctctgcacactcgctatattactcttctcacccaccaccaccaccaccgccgccaccctatcagagcttcccagaggcttcgaggccactcccgactccgcaacccaaaccttccaacctctcctctccgactccactggcaatttctccctcggttttctccgagtcaacaaaacccagctcgccctcgccgtcctccacgtcccgtcatccgagcccttctggctcgccaacccggcccaactcgcccgctggtccgaccgtacccacctcactttcaatggcagtctcgtcctttccgatcctcagacaaggacatattggtcaactcacaccgatgctgatcatgttatcctcctcaacaattcaaacttgctaatacagagtgccaaccagaacgaagctcccgcatggcagagtttcgactttcccacaaataccctcgtcgaaaaccagaatttcacatctaaaatggttctgatttcctccaacggactgtactcgatgcgattagggcccgacttcatcggcctctacgcgaatttcaatgaaggctcggaccagatttatctccggcacaaagcaatggaagccaaaaccgatatagtcgagaatgaaggccccatttacgcgcagataaacccggatcggtacctcggtatgtaccaaacgggtaacccgttacccgccgacgttcaaaagttcaacagctatcagacacccatcaccggcttcctccgggtccggttagaacccgatgggaacttagtcgggtacttctgggacgggtcgaagtgggttttggactaccgggcgatttctcaaacctgcgagcttccgagtgcgtgcggttcgtacgggttgtgtacagccggaaatggctgctcgtgtttggataaccggacggagtttgcctccggcgagtgtttcgcggcgcagtccggtgacttctgcagcgacggaatcccgagaaataatttctgggttttgaggaggaacggggttgagccgccgtacaaggagttgatggggtaccaaacgacgtcgtcgctggcgcagtgcgagaggctttgtgaaaggaactgtagctgttggggcgcggtttttaataacgcatccgggttttgttacatgatggactacccgatccaaaccctagtgggtgtgggggatgagaccaagatggggtattttaaggtgcgggagggtgcagggaggaagaaaatgaatgcgggtgttggggttgggattggtgtgatgtgtggggtggtttttattttggtggggattgttggggtttggaggtttagggtctggaagaggaagaggggaggaggagcagtaaagagccggttcatggagcaaaacggcggcgtttcgcccggcccgtataaggatcttggatcggcaagctttaggtcaattgagatggggagtacatag

Protein Analysis

498

Amino Acids

54.98

Weight (kDa)

6.61

Isoelectric Point (pI)

33.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 93 - 178 1.9e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013446)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03700
fragaria_vesca FvH4_6g17930
malus_domestica MD12G1018400.v1.1 MD14G1016400.v1.1
prunus_persica Prupe.7G116800_v2.0.a1
pyrus_communis pycom12g01520 pycom14g01410
rosa_chinensis RchiOBHm_Chr3g0472201
rosa_laevigata RLG00000024098
rosa_multiflora Rmu_sc0002532.1_g000034
rosa_roxburghii Rroxscaffold_6G00409160
rosa_rugosa Rorug03G0122800
rosa_samantha Rh3AG175100 Rh3BG200100 Rh3CG191600 Rh3CG198900 Rh3DG174300
rosa_wichuraiana Rw3G016620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 376
AatII GACGTC 1 cut(s) 1100
Acc36I ACCTGC 1 cut(s) 890
Acc65I GGTACC 2 cut(s) 705, 1086
AccB1I GGYRCC 2 cut(s) 705, 1086
AccI GTMKAC 1 cut(s) 34
AccII CGCG 4 cut(s) 593, 686, 986, 1154
AclWI GGATC 5 cut(s) 350, 708, 1195, 1458, 1465
AcsI RAATTY 2 cut(s) 511, 595
AcyI GRCGYC 1 cut(s) 1097
AfiI CCNNNNNNNGG 4 cut(s) 782, 1239, 1411, 1447
AgsI TTSAA 5 cut(s) 334, 423, 601, 752, 760
AjiI CACGTC 1 cut(s) 256
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AluBI AGCT 8 cut(s) 49, 121, 235, 458, 765, 889, 1143, 1467
AluI AGCT 8 cut(s) 49, 121, 235, 458, 765, 889, 1143, 1467
Alw26I GTCTC 2 cut(s) 347, 1223
AlwI GGATC 5 cut(s) 350, 708, 1195, 1458, 1465
Ama87I CYCGRG 1 cut(s) 1021
AoxI GGCC 6 cut(s) 138, 291, 569, 583, 673, 1438
ApaI GGGCCC 1 cut(s) 573
ApeKI GCWGC 2 cut(s) 936, 1008
ApoI RAATTY 2 cut(s) 511, 595
Asp718I GGTACC 2 cut(s) 705, 1086
AspLEI GCGC 4 cut(s) 688, 991, 1111, 1154
AspS9I GGNCC 8 cut(s) 292, 309, 569, 570, 613, 674, 796, 1439
AsuC2I CCSGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
AsuHPI GGTGA 3 cut(s) 75, 772, 1010
AvaI CYCGRG 1 cut(s) 1021
AvaII GGWCC 3 cut(s) 309, 613, 796
BaeGI GKGCMC 1 cut(s) 573
BaeI ACNNNNGTAYC 2 cut(s) 697, 730
BanI GGYRCC 2 cut(s) 705, 1086
BanII GRGCYC 2 cut(s) 273, 573
BauI CACGAG 1 cut(s) 940
BbvI GCAGC 2 cut(s) 923, 1020
BccI CCATC 6 cut(s) 785, 806, 1075, 1183, 1231, 1477
BceAI ACGGC 3 cut(s) 230, 1051, 1438
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
BcoDI GTCTC 2 cut(s) 347, 1223
BfaI CTAG 1 cut(s) 1211
BfmI CTRYAG 2 cut(s) 1006, 1138
BfuAI ACCTGC 1 cut(s) 890
BglI GCCNNNNNGGC 2 cut(s) 277, 290
BisI GCNGC 6 cut(s) 105, 937, 987, 1009, 1064, 1426
BlsI GCNGC 6 cut(s) 106, 938, 988, 1010, 1065, 1427
Bme1390I CCNGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
Bme18I GGWCC 3 cut(s) 309, 613, 796
BmeT110I CYCGRG 1 cut(s) 1021
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 8 cut(s) 292, 309, 569, 570, 613, 674, 796, 1439
BmiI GGNNCC 5 cut(s) 571, 676, 707, 797, 1088
BmrFI CCNGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
BmsI GCATC 3 cut(s) 382, 549, 1178
BplI GAGNNNNNCTC 2 cut(s) 953, 985
BpuMI CCSGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
BsaAI YACGTR 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 1097
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 2 cut(s) 205, 709
BsaWI WCCGGW 3 cut(s) 798, 954, 995
BsaXI ACNNNNNCTCC 2 cut(s) 1380, 1410
Bsc4I CCNNNNNNNGG 4 cut(s) 782, 1239, 1411, 1447
Bse118I RCCGGY 2 cut(s) 782, 1404
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 205, 709
BseGI GGATG 3 cut(s) 263, 1169, 1231
BseJI GATNNNNATC 1 cut(s) 396
BseLI CCNNNNNNNGG 4 cut(s) 782, 1239, 1411, 1447
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 36, 59, 374
BseNI ACTGG 1 cut(s) 196
BseRI GAGGAG 5 cut(s) 167, 401, 1060, 1401, 1404
BseSI GKGCMC 1 cut(s) 573
BseXI GCAGC 2 cut(s) 923, 1020
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 2 cut(s) 43, 1284
Bsh1236I CGCG 4 cut(s) 593, 686, 986, 1154
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 6 cut(s) 140, 293, 571, 585, 675, 1440
BshNI GGYRCC 2 cut(s) 705, 1086
BsiEI CGRYCG 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 1021
BsiWI CGTACG 1 cut(s) 909
BslFI GGGAC 2 cut(s) 242, 851
BslI CCNNNNNNNGG 4 cut(s) 782, 1239, 1411, 1447
BsmAI GTCTC 2 cut(s) 347, 1223
BsmFI GGGAC 2 cut(s) 242, 851
BsmI GAATGC 1 cut(s) 1288
BsnI GGCC 6 cut(s) 140, 293, 571, 585, 675, 1440
Bso31I GGTCTC 1 cut(s) 1223
BsoBI CYCGRG 1 cut(s) 1021
Bsp120I GGGCCC 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 273, 573
Bsp1407I TGTACA 1 cut(s) 920
Bsp143I GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
BspANI GGCC 6 cut(s) 140, 293, 571, 585, 675, 1440
BspCNI CTCAG 3 cut(s) 35, 58, 373
BspFNI CGCG 4 cut(s) 593, 686, 986, 1154
BspLI GGNNCC 5 cut(s) 571, 676, 707, 797, 1088
BspMAI CTGCAG 1 cut(s) 1010
BspMI ACCTGC 1 cut(s) 890
BspPI GGATC 5 cut(s) 350, 708, 1195, 1458, 1465
BspT107I GGYRCC 2 cut(s) 705, 1086
BspTNI GGTCTC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 645
BsrFI RCCGGY 2 cut(s) 782, 1404
BsrGI TGTACA 1 cut(s) 920
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 2 cut(s) 782, 1404
BssECI CCNNGG 2 cut(s) 205, 709
BssMI GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
BssNI GRCGYC 1 cut(s) 1097
BssSI CACGAG 1 cut(s) 940
Bst2BI CACGAG 1 cut(s) 940
Bst4CI ACNGT 3 cut(s) 317, 552, 1139
Bst6I CTCTTC 3 cut(s) 83, 1367, 1373
BstACI GRCGYC 1 cut(s) 1097
BstAUI TGTACA 1 cut(s) 920
BstBAI YACGTR 1 cut(s) 38
BstC8I GCNNGC 7 cut(s) 237, 282, 304, 887, 901, 1107, 1465
BstDEI CTNAG 4 cut(s) 22, 45, 360, 820
BstEII GGTNACC 1 cut(s) 728
BstF5I GGATG 3 cut(s) 263, 1169, 1231
BstFNI CGCG 4 cut(s) 593, 686, 986, 1154
BstHHI GCGC 4 cut(s) 688, 991, 1111, 1154
BstKTI GATC 6 cut(s) 358, 400, 703, 1203, 1453, 1460
BstMAI GTCTC 2 cut(s) 347, 1223
BstMBI GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 6 cut(s) 277, 290, 299, 568, 644, 1149
BstPI GGTNACC 1 cut(s) 728
BstSCI CCNGG 6 cut(s) 288, 696, 792, 864, 1172, 1435
BstSFI CTRYAG 2 cut(s) 1006, 1138
BstSLI GKGCMC 1 cut(s) 573
BstUI CGCG 4 cut(s) 593, 686, 986, 1154
BstV1I GCAGC 2 cut(s) 923, 1020
BstX2I RGATCY 1 cut(s) 1450
BstYI RGATCY 1 cut(s) 1450
BsuRI GGCC 6 cut(s) 140, 293, 571, 585, 675, 1440
BtrI CACGTC 1 cut(s) 256
BtsCI GGATG 3 cut(s) 263, 1169, 1231
BtsI GCAGTG 1 cut(s) 1118
BtsIMutI CAGTG 2 cut(s) 189, 1118
BveI ACCTGC 1 cut(s) 890
Cac8I GCNNGC 7 cut(s) 237, 282, 304, 887, 901, 1107, 1465
CfoI GCGC 4 cut(s) 688, 991, 1111, 1154
Cfr10I RCCGGY 2 cut(s) 782, 1404
Cfr13I GGNCC 8 cut(s) 292, 309, 569, 570, 613, 674, 796, 1439
CviAII CATG 4 cut(s) 401, 465, 1186, 1411
DdeI CTNAG 4 cut(s) 22, 45, 360, 820
DpnI GATC 6 cut(s) 357, 399, 702, 1202, 1452, 1459
DpnII GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
DrdI GACNNNNNNGTC 1 cut(s) 376
DseDI GACNNNNNNGTC 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 83, 1367, 1373
EarI CTCTTC 3 cut(s) 83, 1367, 1373
Eco24I GRGCYC 2 cut(s) 273, 573
Eco31I GGTCTC 1 cut(s) 1223
Eco47I GGWCC 3 cut(s) 309, 613, 796
Eco88I CYCGRG 1 cut(s) 1021
Eco91I GGTNACC 1 cut(s) 728
EcoO109I RGGNCCY 2 cut(s) 569, 674
EcoO65I GGTNACC 1 cut(s) 728
EcoT38I GRGCYC 2 cut(s) 273, 573
FaeI CATG 4 cut(s) 404, 468, 1189, 1414
FaqI GGGAC 2 cut(s) 242, 851
FatI CATG 4 cut(s) 400, 464, 1185, 1410
FauI CCCGC 5 cut(s) 311, 469, 748, 1248, 1279
FbaI TGATCA 1 cut(s) 397
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 6 cut(s) 105, 937, 987, 1009, 1064, 1426
FokI GGATG 3 cut(s) 250, 1156, 1238
FriOI GRGCYC 2 cut(s) 273, 573
Fsp4HI GCNGC 6 cut(s) 105, 937, 987, 1009, 1064, 1426
FspBI CTAG 1 cut(s) 1211
GlaI GCGC 4 cut(s) 687, 990, 1110, 1153
GluI GCNGC 6 cut(s) 105, 937, 987, 1009, 1064, 1426
GsaI CCCAGC 1 cut(s) 235
HaeIII GGCC 6 cut(s) 140, 293, 571, 585, 675, 1440
HhaI GCGC 4 cut(s) 688, 991, 1111, 1154
Hin1I GRCGYC 1 cut(s) 1097
Hin1II CATG 4 cut(s) 404, 468, 1189, 1414
Hin6I GCGC 4 cut(s) 686, 989, 1109, 1152
HinP1I GCGC 4 cut(s) 686, 989, 1109, 1152
HincII GTYRAC 2 cut(s) 223, 381
HindII GTYRAC 2 cut(s) 223, 381
HindIII AAGCTT 1 cut(s) 1465
HinfI GANTC 5 cut(s) 7, 149, 185, 219, 1017
HphI GGTGA 3 cut(s) 75, 772, 1010
Hpy166II GTNNAC 4 cut(s) 35, 223, 381, 921
Hpy188III TCNNGA 4 cut(s) 146, 664, 1021, 1369
Hpy8I GTNNAC 4 cut(s) 35, 223, 381, 921
Hpy99I CGWCG 6 cut(s) 503, 749, 1016, 1099, 1102, 1105
HpyAV CCTTC 5 cut(s) 62, 175, 283, 599, 665
HpyCH4III ACNGT 3 cut(s) 317, 552, 1139
HpyCH4IV ACGT 4 cut(s) 37, 255, 747, 1097
HpyCH4V TGCA 4 cut(s) 41, 60, 1008, 1265
HpyF10VI GCNNNNNNNGC 6 cut(s) 277, 290, 299, 568, 644, 1149
HpyF3I CTNAG 4 cut(s) 22, 45, 360, 820
HpySE526I ACGT 4 cut(s) 37, 255, 747, 1097
Hsp92I GRCGYC 1 cut(s) 1097
Hsp92II CATG 4 cut(s) 404, 468, 1189, 1414
HspAI GCGC 4 cut(s) 686, 989, 1109, 1152
KpnI GGTACC 2 cut(s) 709, 1090
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
LmnI GCTCC 4 cut(s) 54, 463, 1391, 1414
Lsp1109I GCAGC 2 cut(s) 923, 1020
LweI GCATC 3 cut(s) 382, 549, 1178
MaeI CTAG 1 cut(s) 1211
MaeII ACGT 4 cut(s) 37, 255, 747, 1097
MaeIII GTNAC 5 cut(s) 25, 728, 735, 998, 1181
MalI GATC 6 cut(s) 357, 399, 702, 1202, 1452, 1459
MboI GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
MboII GAAGA 4 cut(s) 70, 1285, 1384, 1390
MfeI CAATTG 1 cut(s) 1476
MflI RGATCY 1 cut(s) 1450
MhlI GDGCHC 2 cut(s) 273, 573
MluCI AATT 6 cut(s) 196, 418, 511, 595, 1030, 1476
MlyI GAGTC 3 cut(s) 143, 179, 228
MmeI TCCRAC 4 cut(s) 193, 207, 336, 567
MseI TTAA 2 cut(s) 1161, 1248
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 306
MspR9I CCNGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
MunI CAATTG 1 cut(s) 1476
Mva1269I GAATGC 1 cut(s) 1288
MvnI CGCG 4 cut(s) 593, 686, 986, 1154
MwoI GCNNNNNNNGC 6 cut(s) 277, 290, 299, 568, 644, 1149
NciI CCSGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
NdeII GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
NlaIII CATG 4 cut(s) 404, 468, 1189, 1414
NlaIV GGNNCC 5 cut(s) 571, 676, 707, 797, 1088
NmuCI GTSAC 1 cut(s) 998
PcsI WCGNNNNNNNCGW 4 cut(s) 243, 351, 731, 1439
PctI GAATGC 1 cut(s) 1288
PfeI GAWTC 1 cut(s) 1017
Pfl23II CGTACG 1 cut(s) 909
PflFI GACNNNGTC 1 cut(s) 1099
PkrI GCNGC 6 cut(s) 106, 938, 988, 1010, 1065, 1427
PleI GAGTC 3 cut(s) 143, 179, 227
PpsI GAGTC 3 cut(s) 143, 179, 227
Ppu21I YACGTR 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 728
PspFI CCCAGC 1 cut(s) 231
PspLI CGTACG 1 cut(s) 909
PspN4I GGNNCC 5 cut(s) 571, 676, 707, 797, 1088
PspOMI GGGCCC 1 cut(s) 569
PspPI GGNCC 8 cut(s) 292, 309, 569, 570, 613, 674, 796, 1439
PstI CTGCAG 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 1450
PsyI GACNNNGTC 1 cut(s) 1099
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 1161, 1248
SatI GCNGC 6 cut(s) 105, 937, 987, 1009, 1064, 1426
Sau3AI GATC 6 cut(s) 355, 397, 700, 1200, 1450, 1457
Sau96I GGNCC 8 cut(s) 292, 309, 569, 570, 613, 674, 796, 1439
SchI GAGTC 3 cut(s) 143, 179, 228
ScrFI CCNGG 6 cut(s) 290, 698, 794, 866, 1174, 1437
SduI GDGCHC 2 cut(s) 273, 573
SfaNI GCATC 3 cut(s) 382, 549, 1178
SfcI CTRYAG 2 cut(s) 1006, 1138
SinI GGWCC 3 cut(s) 309, 613, 796
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 6 cut(s) 196, 418, 511, 595, 1030, 1476
SspMI CTAG 1 cut(s) 1211
StyD4I CCNGG 6 cut(s) 288, 696, 792, 864, 1172, 1435
TaaI ACNGT 3 cut(s) 317, 552, 1139
TaiI ACGT 4 cut(s) 40, 258, 750, 1100
TaqI TCGA 6 cut(s) 135, 477, 501, 557, 663, 845
TasI AATT 6 cut(s) 196, 418, 511, 595, 1030, 1476
TatI WGTACW 3 cut(s) 552, 920, 1490
TauI GCSGC 4 cut(s) 107, 989, 1066, 1428
TfiI GAWTC 1 cut(s) 1017
Tru1I TTAA 2 cut(s) 1161, 1248
Tru9I TTAA 2 cut(s) 1161, 1248
TscAI CASTG 2 cut(s) 196, 1118
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 2 cut(s) 936, 1008
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 6 cut(s) 4, 568, 618, 684, 1295, 1399
TspGWI ACGGA 3 cut(s) 561, 974, 1029
TspRI CASTG 2 cut(s) 196, 1118
Tth111I GACNNNGTC 1 cut(s) 1099
VpaK11BI GGWCC 3 cut(s) 309, 613, 796
XapI RAATTY 2 cut(s) 511, 595
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 1 cut(s) 1211
ZraI GACGTC 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.