Rmu_sc0002558.1_g000002

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002558.1
OG0020035
Physical Location & Seq
Reverse (-)
3803 .. 5102
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002558.1_g000002.1.cds

Sequence Viewer

Length: 1149 bp
atggttttgaagttgtccgtgaggtttctcaaatctgcaattgatgttgaggtgacgatggtgaaggtggaagtctctcagtcggatgaggtaataaaactacggaagaagttagagatgacgggcttccctctcccacaagattatatttttatgcacaaaatgtccgtgatgttcgagacgacaacgttcaagtggcacaatatgttggacgacgaacatcatactatagatgttgtttcagtgccgaagcaaccatcaactatgggggaccctatcatggcgctggtgtccatccgtgggagtaagagtatttcacaaagagactatgaagcaactcaaaagtcaagcacaattgtacccgactcctaccgaaagaagggaggtacattcacattgtttcatcaactagcgacaactaatggtctgtgctttgctaatttgcagaacgacaggaaactatctacgtatcctgctattagaaacaatgatactattcacattgttgatatgttaaaaaacaagcgacttaatttgaagttcggtgtcattgtcgagggcaaggaaattatggtggagccgaatcctttcaaacaggtgaagcagctaagggatgagctgaagaagagagagttatgtctcccacaacagtattgcttcatcatggtcgtctgtaactcccattatcttatggacgaggaagtgcggcttgcgtggtacttgatgtatcatcatggtgagggggatttgagatacaaagatggtgtagtgcaagttggcagtagtcatatagttagagtaaaagtctgtccatattatgagatcctgaacaacaacaactcagaaagcccagcttcttttttcgcagttggacgctacaacgttgcttgtcctatttttattgctcgaacaaacataatggcttcgcttgtttgcaacggcgtcgttttgctgtcgccaaaaactgacctttctcttcagcggcgcgaagtctcaccagtgaagcacgacctggtggtgaaagtgatgggccggactggatccataggtcaggtgacccgcggacttctcaactttcttgataagcagaaccggttcgtcatgaggaacagatgcggaagccagagaagcaggtgtggtcctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

382

Amino Acids

43.59

Weight (kDa)

9.37

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020035)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027030
rosa_multiflora Rmu_sc0002558.1_g000002
rosa_roxburghii Rroxscaffold_4G00286490 Rroxscaffold_4G00286500
rosa_rugosa Rorug01G0357400
rosa_samantha Rh1CG343800 Rh1DG361100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 1122
AccII CGCG 2 cut(s) 987, 1062
AciI CCGC 5 cut(s) 706, 982, 1060, 1062, 1116
AclI AACGTT 2 cut(s) 188, 882
AclWI GGATC 3 cut(s) 817, 1035, 1048
AcuI CTGAAG 2 cut(s) 641, 962
AcyI GRCGYC 1 cut(s) 942
AfaI GTAC 3 cut(s) 360, 388, 719
AfiI CCNNNNNNNGG 3 cut(s) 280, 300, 379
AgeI ACCGGT 1 cut(s) 1092
AgsI TTSAA 4 cut(s) 10, 193, 538, 592
AjnI CCWGG 2 cut(s) 1011, 1141
AluBI AGCT 3 cut(s) 607, 619, 854
AluI AGCT 3 cut(s) 607, 619, 854
Alw26I GTCTC 5 cut(s) 79, 173, 318, 644, 997
AlwI GGATC 3 cut(s) 817, 1035, 1048
AoxI GGCC 1 cut(s) 1030
ApeKI GCWGC 1 cut(s) 604
AsiGI ACCGGT 1 cut(s) 1092
Asp700I GAANNNNTTC 2 cut(s) 587, 1094
AspLEI GCGC 2 cut(s) 286, 987
AspS9I GGNCC 3 cut(s) 271, 1030, 1139
AsuHPI GGTGA 7 cut(s) 64, 73, 610, 749, 987, 1030, 1066
AvaII GGWCC 2 cut(s) 271, 1139
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BamHI GGATCC 1 cut(s) 1040
BbvI GCAGC 1 cut(s) 616
BccI CCATC 5 cut(s) 52, 265, 302, 755, 1021
BceAI ACGGC 1 cut(s) 955
BcgI CGANNNNNNTGC 2 cut(s) 925, 959
BciT130I CCWGG 2 cut(s) 1013, 1143
BciVI GTATCC 1 cut(s) 480
BcoDI GTCTC 5 cut(s) 79, 173, 318, 644, 997
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 1122
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 3 cut(s) 605, 707, 983
BlsI GCNGC 3 cut(s) 606, 708, 984
Bme1390I CCNGG 2 cut(s) 1013, 1143
Bme18I GGWCC 2 cut(s) 271, 1139
BmgT120I GGNCC 3 cut(s) 271, 1030, 1139
BmiI GGNNCC 4 cut(s) 272, 273, 579, 1042
BmrFI CCNGG 2 cut(s) 1013, 1143
BmsI GCATC 1 cut(s) 1103
Bpu10I CCTNAGC 1 cut(s) 608
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 942
BsaJI CCNNGG 2 cut(s) 298, 1060
BsaWI WCCGGW 1 cut(s) 1092
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 300, 379
Bse118I RCCGGY 1 cut(s) 1092
Bse1I ACTGG 2 cut(s) 998, 1042
BseBI CCWGG 2 cut(s) 1013, 1143
BseDI CCNNGG 2 cut(s) 298, 1060
BseGI GGATG 3 cut(s) 91, 294, 619
BseLI CCNNNNNNNGG 3 cut(s) 280, 300, 379
BseMII CTCAG 2 cut(s) 92, 855
BseNI ACTGG 2 cut(s) 998, 1042
BseXI GCAGC 1 cut(s) 616
BseYI CCCAGC 1 cut(s) 850
Bsh1236I CGCG 2 cut(s) 987, 1062
BshFI GGCC 1 cut(s) 1032
BshTI ACCGGT 1 cut(s) 1092
BsiSI CCGG 2 cut(s) 1033, 1093
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 3 cut(s) 280, 300, 379
BsmAI GTCTC 5 cut(s) 79, 173, 318, 644, 997
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 1 cut(s) 1032
Bsp143I GATC 2 cut(s) 822, 1040
BspACI CCGC 5 cut(s) 706, 982, 1060, 1062, 1116
BspANI GGCC 1 cut(s) 1032
BspCNI CTCAG 2 cut(s) 91, 854
BspFNI CGCG 2 cut(s) 987, 1062
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 4 cut(s) 272, 273, 579, 1042
BspMI ACCTGC 1 cut(s) 1122
BspPI GGATC 3 cut(s) 817, 1035, 1048
BsrFI RCCGGY 1 cut(s) 1092
BsrI ACTGG 2 cut(s) 998, 1042
BssAI RCCGGY 1 cut(s) 1092
BssECI CCNNGG 2 cut(s) 298, 1060
BssMI GATC 2 cut(s) 822, 1040
BssNI GRCGYC 1 cut(s) 942
Bst2UI CCWGG 2 cut(s) 1013, 1143
Bst4CI ACNGT 1 cut(s) 651
Bst6I CTCTTC 2 cut(s) 620, 981
BstACI GRCGYC 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 3 cut(s) 78, 608, 841
BstDSI CCRYGG 2 cut(s) 298, 1060
BstEII GGTNACC 1 cut(s) 1054
BstF5I GGATG 3 cut(s) 91, 294, 619
BstFNI CGCG 2 cut(s) 987, 1062
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 987
BstKTI GATC 2 cut(s) 825, 1043
BstMAI GTCTC 5 cut(s) 79, 173, 318, 644, 997
BstMBI GATC 2 cut(s) 822, 1040
BstMWI GCNNNNNNNGC 1 cut(s) 1128
BstNI CCWGG 2 cut(s) 1013, 1143
BstPI GGTNACC 1 cut(s) 1054
BstSCI CCNGG 2 cut(s) 1011, 1141
BstSFI CTRYAG 1 cut(s) 228
BstSNI TACGTA 1 cut(s) 468
BstUI CGCG 2 cut(s) 987, 1062
BstV1I GCAGC 1 cut(s) 616
BstX2I RGATCY 2 cut(s) 822, 1040
BstYI RGATCY 2 cut(s) 822, 1040
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 1 cut(s) 1032
BtgI CCRYGG 2 cut(s) 298, 1060
BtsCI GGATG 3 cut(s) 91, 294, 619
BtsIMutI CAGTG 2 cut(s) 249, 1005
BveI ACCTGC 1 cut(s) 1122
Cac8I GCNNGC 1 cut(s) 711
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 2 cut(s) 286, 987
Cfr10I RCCGGY 1 cut(s) 1092
Cfr13I GGNCC 3 cut(s) 271, 1030, 1139
Cfr42I CCGCGG 1 cut(s) 1063
CseI GACGC 2 cut(s) 882, 931
CsiI ACCWGGT 1 cut(s) 1011
Csp6I GTAC 3 cut(s) 359, 387, 718
CspAI ACCGGT 1 cut(s) 1092
CviAII CATG 4 cut(s) 280, 664, 734, 1102
CviQI GTAC 3 cut(s) 359, 387, 718
DdeI CTNAG 3 cut(s) 78, 608, 841
DpnI GATC 2 cut(s) 824, 1042
DpnII GATC 2 cut(s) 822, 1040
Eam1104I CTCTTC 2 cut(s) 620, 981
EarI CTCTTC 2 cut(s) 620, 981
Eco105I TACGTA 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 271, 1139
Eco57I CTGAAG 2 cut(s) 641, 962
Eco91I GGTNACC 1 cut(s) 1054
EcoO109I RGGNCCY 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 1054
EcoRII CCWGG 2 cut(s) 1011, 1141
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 4 cut(s) 283, 667, 737, 1105
FalI AAGNNNNNCTT 4 cut(s) 693, 725, 838, 870
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 279, 663, 733, 1101
FauI CCCGC 1 cut(s) 1067
Fnu4HI GCNGC 3 cut(s) 605, 707, 983
FokI GGATG 3 cut(s) 98, 281, 626
Fsp4HI GCNGC 3 cut(s) 605, 707, 983
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 285, 986
GluI GCNGC 3 cut(s) 605, 707, 983
GsaI CCCAGC 1 cut(s) 854
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 1 cut(s) 1032
HapII CCGG 2 cut(s) 1033, 1093
HgaI GACGC 2 cut(s) 882, 931
HhaI GCGC 2 cut(s) 286, 987
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 4 cut(s) 283, 667, 737, 1105
Hin6I GCGC 2 cut(s) 284, 985
HinP1I GCGC 2 cut(s) 284, 985
HinfI GANTC 2 cut(s) 365, 583
HpaII CCGG 2 cut(s) 1033, 1093
HphI GGTGA 7 cut(s) 64, 73, 610, 749, 987, 1030, 1066
Hpy188I TCNGA 2 cut(s) 85, 844
Hpy188III TCNNGA 4 cut(s) 178, 826, 1079, 1102
Hpy99I CGWCG 2 cut(s) 218, 947
HpyAV CCTTC 2 cut(s) 58, 373
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4IV ACGT 3 cut(s) 188, 467, 882
HpyCH4V TGCA 5 cut(s) 38, 157, 445, 772, 936
HpyF10VI GCNNNNNNNGC 1 cut(s) 1128
HpyF3I CTNAG 3 cut(s) 78, 608, 841
HpySE526I ACGT 3 cut(s) 188, 467, 882
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 4 cut(s) 283, 667, 737, 1105
HspAI GCGC 2 cut(s) 284, 985
KflI GGGWCCC 1 cut(s) 271
KspI CCGCGG 1 cut(s) 1063
Kzo9I GATC 2 cut(s) 822, 1040
LmnI GCTCC 1 cut(s) 577
Lsp1109I GCAGC 1 cut(s) 616
LweI GCATC 1 cut(s) 1103
MabI ACCWGGT 1 cut(s) 1011
MaeI CTAG 1 cut(s) 410
MaeII ACGT 3 cut(s) 188, 467, 882
MaeIII GTNAC 3 cut(s) 52, 674, 1054
MalI GATC 2 cut(s) 824, 1042
MboI GATC 2 cut(s) 822, 1040
MboII GAAGA 4 cut(s) 118, 634, 637, 968
MfeI CAATTG 2 cut(s) 39, 354
MflI RGATCY 2 cut(s) 822, 1040
MluCI AATT 5 cut(s) 39, 354, 439, 532, 567
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 3 cut(s) 63, 189, 850
MnlI CCTC 9 cut(s) 15, 43, 82, 141, 377, 550, 691, 733, 1098
MroXI GAANNNNTTC 2 cut(s) 587, 1094
MseI TTAA 2 cut(s) 515, 531
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 2 cut(s) 982, 1062
MspI CCGG 2 cut(s) 1033, 1093
MspR9I CCNGG 2 cut(s) 1013, 1143
MunI CAATTG 2 cut(s) 39, 354
MvaI CCWGG 2 cut(s) 1013, 1143
MvnI CGCG 2 cut(s) 987, 1062
MwoI GCNNNNNNNGC 1 cut(s) 1128
NdeII GATC 2 cut(s) 822, 1040
NlaIII CATG 4 cut(s) 283, 667, 737, 1105
NlaIV GGNNCC 4 cut(s) 272, 273, 579, 1042
NmuCI GTSAC 2 cut(s) 52, 1054
PagI TCATGA 1 cut(s) 1101
PaqCI CACCTGC 1 cut(s) 1122
PdmI GAANNNNTTC 2 cut(s) 587, 1094
PfeI GAWTC 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 1092
PkrI GCNGC 3 cut(s) 606, 708, 984
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
Ppu21I YACGTR 1 cut(s) 468
PpuMI RGGWCCY 1 cut(s) 271
Psp1406I AACGTT 2 cut(s) 188, 882
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 1011, 1141
PspEI GGTNACC 1 cut(s) 1054
PspFI CCCAGC 1 cut(s) 850
PspGI CCWGG 2 cut(s) 1011, 1141
PspN4I GGNNCC 4 cut(s) 272, 273, 579, 1042
PspPI GGNCC 3 cut(s) 271, 1030, 1139
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 2 cut(s) 822, 1040
RsaI GTAC 3 cut(s) 360, 388, 719
RsaNI GTAC 3 cut(s) 359, 387, 718
RseI CAYNNNNRTG 1 cut(s) 735
SacII CCGCGG 1 cut(s) 1063
SaqAI TTAA 2 cut(s) 515, 531
SatI GCNGC 3 cut(s) 605, 707, 983
Sau3AI GATC 2 cut(s) 822, 1040
Sau96I GGNCC 3 cut(s) 271, 1030, 1139
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 2 cut(s) 1013, 1143
SexAI ACCWGGT 1 cut(s) 1011
SfaNI GCATC 1 cut(s) 1103
SfcI CTRYAG 1 cut(s) 228
Sfr303I CCGCGG 1 cut(s) 1063
SgrBI CCGCGG 1 cut(s) 1063
SinI GGWCC 2 cut(s) 271, 1139
SmiMI CAYNNNNRTG 1 cut(s) 735
SnaBI TACGTA 1 cut(s) 468
Sse9I AATT 5 cut(s) 39, 354, 439, 532, 567
SsiI CCGC 5 cut(s) 706, 982, 1060, 1062, 1116
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 1011, 1141
TaaI ACNGT 1 cut(s) 651
TaiI ACGT 3 cut(s) 191, 470, 885
TaqI TCGA 3 cut(s) 177, 555, 907
TasI AATT 5 cut(s) 39, 354, 439, 532, 567
TauI GCSGC 2 cut(s) 709, 985
TfiI GAWTC 1 cut(s) 583
Tru1I TTAA 2 cut(s) 515, 531
Tru9I TTAA 2 cut(s) 515, 531
TscAI CASTG 2 cut(s) 249, 1005
TseFI GTSAC 2 cut(s) 52, 1054
TseI GCWGC 1 cut(s) 604
Tsp45I GTSAC 2 cut(s) 52, 1054
TspDTI ATGAA 3 cut(s) 345, 392, 649
TspGWI ACGGA 4 cut(s) 7, 118, 157, 287
TspRI CASTG 2 cut(s) 249, 1005
VpaK11BI GGWCC 2 cut(s) 271, 1139
XmnI GAANNNNTTC 2 cut(s) 587, 1094
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.