Rh1CG343800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020035
Physical Location & Seq
Forward (+)
62151701 .. 62176370
24670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG343800.1

Sequence Viewer

Length: 1185 bp
ATGGTTTTGAGGTTGTCCGTGAGGTTTCTCAACTCTGCAACTGATGTTGAGGTGACGATGGTGAAGGTGGAAGTCTCTAAGTCTGATGAGGTAGTAAAACTACGGAAGAAGTTAGAGATGACGGGCTTCCCTCTCCCAAAAGATTATATCTTTATGCACAAAATGTCCGTGATGTTTGAGACGACAACGTTCAAGTGGCACAATATGTTGGACCGCGAACATCATACTATAGATGTTGTTTCAGTGCCGAAACAACCATCAACTATGGGGTACTCTATCACGGCGCTGTGTTCCATCAGTGGGGGTAAGAATATCTTACAAACAGAGCTTGAAGCAACTCAAAAGTCGAGTAAAGTTGTACCCAACTCCTGCCGAAAGCTGGGAGGTACATTCACATTGTTTCATCAACTAGCGACAACTAGTGGTCTGTGCTTTGCTAATTTGCAGGACGATAGGAGATTATATACGTATCCTACTATTAGCAACAATGATACTATTCACATTGTTGACATGTTGAAAAACAAGCGATTTAAGTTGAATGTCTGTGTCATTGTCAAGGGCGAGGAATTTATGGTGGAGCCGAATCCTTTTAAGCAGGTGAAGCGGCTAAGGGATGAGCTGAAGAAGAGAAAGTGGTTATGTCTCCCACAAGAGAATTGCTTCATCATGGTCGTCAATAACTCTCATTATCTTATGGACGAGGAAGTGCAGCTTGTGTGGTACTTGATGTATCATTTTGCACAATCATCAGTGTTGCCTCCTTTGCCCCAGTGTTTCCCATCGGGAGAGCTTAGAAGAGTTGCTGGATTTCCTCTTGGGAGTACATATGAGGACCATTCTTTTGGAGTTTCCAGTCCTAAGCCTCCACCTTTCGTGGCAACAGAGGAAGTAAAGAAACTTCAAAGAAAGCATGCAAAGATGCCTCTAGGAAGTCCAGTACTAGGCGGAGAGGAATACCAGTTTGAAGAATTTGTGCAGGTGGATTCCGAACTTCGCTCCCCAGAAGCAGGAGGTCCAAAACATCACAGCGCACTCCCACTGGTACTGCATTGCTCAGACTTTGTTTGGTTTGCAATAGCGATCCTAAGCTTGATGTCAACTATTCTGCCGTGGAAAACTGAAGTTATCTTGAAGAAAGTAGTCATTGCACTTGGCAAGAGTGTAGCTGGAAGTATCAAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ada3

Protein Analysis

394

Amino Acids

44.71

Weight (kDa)

8.84

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020035)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027030
rosa_multiflora Rmu_sc0002558.1_g000002
rosa_roxburghii Rroxscaffold_4G00286490 Rroxscaffold_4G00286500
rosa_rugosa Rorug01G0357400
rosa_samantha Rh1CG343800 Rh1DG361100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 586, 967
Acc36I ACCTGC 2 cut(s) 586, 967
AccII CGCG 1 cut(s) 216
AciI CCGC 3 cut(s) 214, 604, 945
AclI AACGTT 1 cut(s) 188
AclWI GGATC 1 cut(s) 1075
AcsI RAATTY 2 cut(s) 566, 968
AcuI CTGAAG 2 cut(s) 641, 1140
AfaI GTAC 7 cut(s) 272, 360, 388, 722, 823, 939, 1044
AfiI CCNNNNNNNGG 4 cut(s) 300, 379, 941, 1007
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 7 cut(s) 193, 332, 517, 538, 902, 965, 1132
AhlI ACTAGT 1 cut(s) 419
AluBI AGCT 7 cut(s) 328, 379, 619, 712, 790, 1089, 1166
AluI AGCT 7 cut(s) 328, 379, 619, 712, 790, 1089, 1166
Alw26I GTCTC 3 cut(s) 79, 173, 647
AlwI GGATC 1 cut(s) 1075
ApeKI GCWGC 1 cut(s) 709
ApoI RAATTY 2 cut(s) 566, 968
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 659
AspLEI GCGC 2 cut(s) 286, 1031
AspS9I GGNCC 3 cut(s) 211, 832, 1013
AsuHPI GGTGA 3 cut(s) 64, 73, 610
AvaII GGWCC 3 cut(s) 211, 832, 1013
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
BbvI GCAGC 1 cut(s) 721
BccI CCATC 4 cut(s) 52, 265, 302, 787
BceAI ACGGC 2 cut(s) 297, 1093
BciVI GTATCC 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 79, 173, 647
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 4 cut(s) 410, 420, 926, 941
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 2 cut(s) 586, 967
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 2 cut(s) 605, 710
BlsI GCNGC 2 cut(s) 606, 711
BmcAI AGTACT 1 cut(s) 939
Bme18I GGWCC 3 cut(s) 211, 832, 1013
BmgT120I GGNCC 3 cut(s) 211, 832, 1013
BmiI GGNNCC 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 763
BmsI GCATC 1 cut(s) 909
BmuI ACTGGG 1 cut(s) 763
Bpu10I CCTNAGC 3 cut(s) 608, 858, 1085
BsaAI YACGTR 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 1109
Bsc4I CCNNNNNNNGG 4 cut(s) 300, 379, 941, 1007
Bse1I ACTGG 5 cut(s) 769, 852, 935, 958, 1044
Bse3DI GCAATG 2 cut(s) 1048, 1143
BseDI CCNNGG 1 cut(s) 1109
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 4 cut(s) 300, 379, 941, 1007
BseMI GCAATG 2 cut(s) 1048, 1143
BseMII CTCAG 1 cut(s) 1068
BseNI ACTGG 5 cut(s) 769, 852, 935, 958, 1044
BseXI GCAGC 1 cut(s) 721
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 2 cut(s) 728, 995
Bsh1236I CGCG 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 300, 379, 941, 1007
BsmAI GTCTC 3 cut(s) 79, 173, 647
BsmBI CGTCTC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 1080
BspACI CCGC 3 cut(s) 214, 604, 945
BspCNI CTCAG 1 cut(s) 1067
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 1 cut(s) 579
BspMI ACCTGC 2 cut(s) 586, 967
BspPI GGATC 1 cut(s) 1075
BsrDI GCAATG 2 cut(s) 1048, 1143
BsrI ACTGG 5 cut(s) 769, 852, 935, 958, 1044
BssECI CCNNGG 1 cut(s) 1109
BssMI GATC 1 cut(s) 1080
Bst6I CTCTTC 2 cut(s) 620, 790
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 912
BstDEI CTNAG 6 cut(s) 78, 608, 791, 858, 1054, 1085
BstDSI CCRYGG 1 cut(s) 1109
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 1031
BstKTI GATC 1 cut(s) 1083
BstMAI GTCTC 3 cut(s) 79, 173, 647
BstMBI GATC 1 cut(s) 1080
BstMWI GCNNNNNNNGC 2 cut(s) 601, 763
BstNSI RCATGY 2 cut(s) 514, 914
BstSFI CTRYAG 1 cut(s) 228
BstSNI TACGTA 1 cut(s) 468
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 721
BstXI CCANNNNNNTGG 1 cut(s) 842
BsuI GTATCC 1 cut(s) 480
BtgI CCRYGG 1 cut(s) 1109
BtsCI GGATG 1 cut(s) 619
BtsIMutI CAGTG 5 cut(s) 249, 304, 756, 776, 1037
BveI ACCTGC 2 cut(s) 586, 967
Cac8I GCNNGC 1 cut(s) 912
CfoI GCGC 2 cut(s) 286, 1031
Cfr13I GGNCC 3 cut(s) 211, 832, 1013
Csp6I GTAC 7 cut(s) 271, 359, 387, 721, 822, 938, 1043
CviAII CATG 3 cut(s) 511, 667, 911
CviQI GTAC 7 cut(s) 271, 359, 387, 721, 822, 938, 1043
DdeI CTNAG 6 cut(s) 78, 608, 791, 858, 1054, 1085
DpnI GATC 1 cut(s) 1082
DpnII GATC 1 cut(s) 1080
Eam1104I CTCTTC 2 cut(s) 620, 790
EarI CTCTTC 2 cut(s) 620, 790
EciI GGCGGA 1 cut(s) 960
Eco105I TACGTA 1 cut(s) 468
Eco47I GGWCC 3 cut(s) 211, 832, 1013
Eco57I CTGAAG 2 cut(s) 641, 1140
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 514, 670, 914
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 696, 728
FatI CATG 3 cut(s) 510, 666, 910
FauNDI CATATG 1 cut(s) 826
Fnu4HI GCNGC 2 cut(s) 605, 710
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 2 cut(s) 605, 710
FspBI CTAG 4 cut(s) 410, 420, 926, 941
GlaI GCGC 2 cut(s) 285, 1030
GluI GCNGC 2 cut(s) 605, 710
GsaI CCCAGC 1 cut(s) 383
HaeII RGCGCY 1 cut(s) 287
HhaI GCGC 2 cut(s) 286, 1031
Hin1II CATG 3 cut(s) 514, 670, 914
Hin6I GCGC 2 cut(s) 284, 1029
HinP1I GCGC 2 cut(s) 284, 1029
HincII GTYRAC 2 cut(s) 508, 1098
HindII GTYRAC 2 cut(s) 508, 1098
HindIII AAGCTT 1 cut(s) 1087
HinfI GANTC 2 cut(s) 583, 983
HphI GGTGA 3 cut(s) 64, 73, 610
Hpy166II GTNNAC 2 cut(s) 508, 1098
Hpy188I TCNGA 3 cut(s) 85, 988, 1057
Hpy188III TCNNGA 2 cut(s) 783, 1129
Hpy8I GTNNAC 2 cut(s) 508, 1098
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 188, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 601, 763
HpyF3I CTNAG 6 cut(s) 78, 608, 791, 858, 1054, 1085
HpySE526I ACGT 2 cut(s) 188, 467
Hsp92II CATG 3 cut(s) 514, 670, 914
HspAI GCGC 2 cut(s) 284, 1029
Kzo9I GATC 1 cut(s) 1080
LmnI GCTCC 2 cut(s) 577, 1001
Lsp1109I GCAGC 1 cut(s) 721
LweI GCATC 1 cut(s) 909
MaeI CTAG 4 cut(s) 410, 420, 926, 941
MaeII ACGT 2 cut(s) 188, 467
MaeIII GTNAC 1 cut(s) 52
MalI GATC 1 cut(s) 1082
MboI GATC 1 cut(s) 1080
MboII GAAGA 6 cut(s) 118, 634, 637, 807, 977, 1144
MluCI AATT 4 cut(s) 439, 566, 655, 968
MmeI TCCRAC 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 2 cut(s) 531, 591
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 601, 763
NdeI CATATG 1 cut(s) 826
NdeII GATC 1 cut(s) 1080
NlaIII CATG 3 cut(s) 514, 670, 914
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 52
NspI RCATGY 2 cut(s) 514, 914
PaeI GCATGC 1 cut(s) 914
PaqCI CACCTGC 2 cut(s) 586, 967
PciI ACATGT 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 583, 983
PkrI GCNGC 2 cut(s) 606, 711
Ppu21I YACGTR 1 cut(s) 468
PscI ACATGT 1 cut(s) 510
Psp1406I AACGTT 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 379
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 3 cut(s) 211, 832, 1013
RsaI GTAC 7 cut(s) 272, 360, 388, 722, 823, 939, 1044
RsaNI GTAC 7 cut(s) 271, 359, 387, 721, 822, 938, 1043
SaqAI TTAA 2 cut(s) 531, 591
SatI GCNGC 2 cut(s) 605, 710
Sau3AI GATC 1 cut(s) 1080
Sau96I GGNCC 3 cut(s) 211, 832, 1013
ScaI AGTACT 1 cut(s) 939
SfaNI GCATC 1 cut(s) 909
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 3 cut(s) 211, 832, 1013
SnaBI TACGTA 1 cut(s) 468
SpeI ACTAGT 1 cut(s) 419
SphI GCATGC 1 cut(s) 914
Sse9I AATT 4 cut(s) 439, 566, 655, 968
SsiI CCGC 3 cut(s) 214, 604, 945
SspMI CTAG 4 cut(s) 410, 420, 926, 941
TaiI ACGT 2 cut(s) 191, 470
TaqI TCGA 1 cut(s) 347
TasI AATT 4 cut(s) 439, 566, 655, 968
TatI WGTACW 2 cut(s) 821, 937
TauI GCSGC 1 cut(s) 607
TfiI GAWTC 2 cut(s) 583, 983
Tru1I TTAA 2 cut(s) 531, 591
Tru9I TTAA 2 cut(s) 531, 591
TscAI CASTG 5 cut(s) 249, 304, 756, 776, 1044
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 709
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 392, 652
TspGWI ACGGA 3 cut(s) 7, 118, 157
TspRI CASTG 5 cut(s) 249, 304, 756, 776, 1044
VpaK11BI GGWCC 3 cut(s) 211, 832, 1013
XapI RAATTY 2 cut(s) 566, 968
XceI RCATGY 2 cut(s) 514, 914
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 4 cut(s) 410, 420, 926, 941
ZrmI AGTACT 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.