Rh1DG361100

40s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0020035
Physical Location & Seq
Forward (+)
58732677 .. 58748543
15867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG361100.1

Sequence Viewer

Length: 486 bp
ATGATAGGTGAGCATTTCTTTTGTTGCCGTTGGATATGGGAGAGCGCTATACAACGTTGCTTTTGTCCTATTTTTGTTGCTCGAACAAACATAATGGCTTCGCCTGTTTGCAACGGCGTGGTTTTGCTGTCGCCAAAAACTGGCCTTTCTCTTCAGCGGCGCGAAATCTCACCAGTGAAGCACGTGGTGAAAGTGATGGGCCGGACTGGATCCATAGGTCAGGTGACCCACGGACTTCTCAACTTTCTTGATGAGCAGAACCGGTTCGTCATGAGGAACAGATGCGGAAGCCAGAGAAGCAGGTGTGGTCCTGGCTGTGGAGGAGTGTGGTGGGGATTGGGTCAGGTTTCGGCCTGGGACGGGTCGGGTTGGAAGTCGGAGGCCGATTTGAGTGGAGTGAGTTTCGAAGGATTGAAATTTAGAGGAGGAGAGAAAGAAGTCATTGTTTTGGAAATAAAAGTTGAAATCTGGGATGCATCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S28e

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

8.89

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020035)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027030
rosa_multiflora Rmu_sc0002558.1_g000002
rosa_roxburghii Rroxscaffold_4G00286490 Rroxscaffold_4G00286500
rosa_rugosa Rorug01G0357400
rosa_samantha Rh1CG343800 Rh1DG361100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 291
AccB7I CCANNNNNTGG 1 cut(s) 140
AccII CGCG 1 cut(s) 162
AciI CCGC 2 cut(s) 157, 285
AclI AACGTT 1 cut(s) 55
AclWI GGATC 2 cut(s) 204, 217
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 137
AcvI CACGTG 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 187
AfeI AGCGCT 1 cut(s) 46
AfiI CCNNNNNNNGG 3 cut(s) 140, 317, 360
AgeI ACCGGT 1 cut(s) 261
AgsI TTSAA 2 cut(s) 415, 464
AjnI CCWGG 2 cut(s) 310, 353
AlwI GGATC 2 cut(s) 204, 217
Aor51HI AGCGCT 1 cut(s) 46
AoxI GGCC 4 cut(s) 142, 199, 351, 381
ApoI RAATTY 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 263
AspLEI GCGC 2 cut(s) 47, 162
AspS9I GGNCC 2 cut(s) 199, 308
AsuHPI GGTGA 4 cut(s) 20, 162, 199, 235
AsuII TTCGAA 1 cut(s) 405
AvaII GGWCC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 184
BccI CCATC 1 cut(s) 190
BceAI ACGGC 2 cut(s) 12, 130
BciT130I CCWGG 2 cut(s) 312, 355
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 312, 355
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 199, 308
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 2 cut(s) 312, 355
BmsI GCATC 2 cut(s) 272, 463
Bpu14I TTCGAA 1 cut(s) 405
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 229, 354
BsaWI WCCGGW 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 317, 360
Bse118I RCCGGY 1 cut(s) 261
Bse1I ACTGG 3 cut(s) 145, 173, 211
BseBI CCWGG 2 cut(s) 312, 355
BseDI CCNNGG 2 cut(s) 229, 354
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 140, 317, 360
BseNI ACTGG 3 cut(s) 145, 173, 211
BseRI GAGGAG 3 cut(s) 336, 438, 441
Bsh1236I CGCG 1 cut(s) 162
BshFI GGCC 4 cut(s) 144, 201, 353, 383
BshTI ACCGGT 1 cut(s) 261
BsiSI CCGG 2 cut(s) 202, 262
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 140, 317, 360
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 4 cut(s) 144, 201, 353, 383
Bsp119I TTCGAA 1 cut(s) 405
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 2 cut(s) 157, 285
BspANI GGCC 4 cut(s) 144, 201, 353, 383
BspFNI CGCG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 291
BspPI GGATC 2 cut(s) 204, 217
BspT104I TTCGAA 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 261
BsrI ACTGG 3 cut(s) 145, 173, 211
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 229, 354
BssMI GATC 1 cut(s) 209
Bst2UI CCWGG 2 cut(s) 312, 355
Bst6I CTCTTC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 229
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 478
BstFNI CGCG 1 cut(s) 162
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 2 cut(s) 47, 162
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 2 cut(s) 312, 355
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 310, 353
BstUI CGCG 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuRI GGCC 4 cut(s) 144, 201, 353, 383
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 478
BtsIMutI CAGTG 1 cut(s) 180
BveI ACCTGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 47, 162
Cfr10I RCCGGY 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 199, 308
CspAI ACCGGT 1 cut(s) 261
CviAII CATG 1 cut(s) 271
CviJI RGCY 7 cut(s) 98, 144, 201, 291, 315, 353, 383
CviKI_1 RGCY 7 cut(s) 98, 144, 201, 291, 315, 353, 383
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 308
Eco47III AGCGCT 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 137
Eco72I CACGTG 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 310, 353
EcoT22I ATGCAT 1 cut(s) 478
FaeI CATG 1 cut(s) 274
FaiI YATR 5 cut(s) 37, 50, 92, 215, 272
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 158
GlaI GCGC 2 cut(s) 46, 161
GluI GCNGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 144, 201, 353, 383
HapII CCGG 2 cut(s) 202, 262
HhaI GCGC 2 cut(s) 47, 162
Hin1II CATG 1 cut(s) 274
Hin6I GCGC 2 cut(s) 45, 160
HinP1I GCGC 2 cut(s) 45, 160
HpaII CCGG 2 cut(s) 202, 262
HphI GGTGA 4 cut(s) 20, 162, 199, 235
Hpy188I TCNGA 1 cut(s) 379
Hpy188III TCNNGA 2 cut(s) 248, 271
HpyAV CCTTC 1 cut(s) 401
HpyCH4IV ACGT 2 cut(s) 55, 183
HpyCH4V TGCA 2 cut(s) 111, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 55, 183
Hsp92II CATG 1 cut(s) 274
HspAI GCGC 2 cut(s) 45, 160
Kzo9I GATC 1 cut(s) 209
LweI GCATC 2 cut(s) 272, 463
MaeII ACGT 2 cut(s) 55, 183
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 209
MluCI AATT 1 cut(s) 416
MmeI TCCRAC 3 cut(s) 11, 350, 357
MnlI CCTC 5 cut(s) 267, 314, 373, 416, 419
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 2 cut(s) 202, 262
MspR9I CCNGG 2 cut(s) 312, 355
MvaI CCWGG 2 cut(s) 312, 355
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 1 cut(s) 209
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 223
NsiI ATGCAT 1 cut(s) 478
NspV TTCGAA 1 cut(s) 405
PagI TCATGA 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 261
PkrI GCNGC 1 cut(s) 159
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 55
Psp6I CCWGG 2 cut(s) 310, 353
PspCI CACGTG 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 310, 353
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 2 cut(s) 199, 308
PsuI RGATCY 1 cut(s) 209
SatI GCNGC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 2 cut(s) 199, 308
ScrFI CCNGG 2 cut(s) 312, 355
SetI ASST 7 cut(s) 10, 58, 186, 220, 225, 305, 348
SfaNI GCATC 2 cut(s) 272, 463
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 1 cut(s) 308
Sse9I AATT 1 cut(s) 416
SsiI CCGC 2 cut(s) 157, 285
StyD4I CCNGG 2 cut(s) 310, 353
TaiI ACGT 2 cut(s) 58, 186
TaqI TCGA 2 cut(s) 82, 405
TasI AATT 1 cut(s) 416
TauI GCSGC 1 cut(s) 160
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 416
XmnI GAANNNNTTC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.