Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006852

Physical Location & Seq

Genomic Coordinates Forward (+)

47372940 .. 47377110

Gene Structure 4171 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCAGCAACGCCCAACTCCAGTACCGTTAGTCTGAAGCTCCTCATGGATGTAAAGCGTCAAAAGGTTCTCTTTGCTGAAGCCGGTAAGGATTTTGTGGATTTTCTTTTCGCTCTTCTCTCTTTGCCTATTGGTACTGTCATTAGGCTTCTCTCCAAGGGTGGGATGGTTGGTAGCTTTGGTAAACTGTATGAGAGTATTGAAAATCTTGATAATACATATATCCAACCCACACTAAACAAGGATATCCTGCTCAAACCCAAGGCACCAGTTGATGGACCTAATATCCTCAAGTTGGCCAACAATGTTGAATCAAGTGCTCGAAAGGAGCTCTATTTGTGTAGTCATTCAAATAATTACTCTAAATCCCACCCGTACGTGACTGAAAACCCCAATGAAAAATGTCCATCGTGTTCATACCCCATGAACCTCCGAACTACTTATGTCGGTCAGCCGACTACCACGGAAGCAACTTCTGGTGCCGGCGCTGCTGGATATGTCAAAGGCGTTGTGACATACATGATAATGGATGATCTGGAGGTGAAGCCCATGTCCACCATTTCAAGCATCACTATGCTTAACAGGTTCAATATCAAGGATGTTGGGGCCCTTGAAGAGAAGGTTGTTGAACTTGGCATGGATAAGGGTGTGAAGCTGTTGAAGGAGTCTCTGCGGTCCAAATCTGTCCTAACAAAGGTCTTCCTTGAGAAGAAAGCTGGGATTGACATATCATTCTCGGAGGATCAACTACGTAGAGCCTCTGCTGCAACCAACACTACATCTATTTCATTTGGAGCATCCTCGCCTTCTGCTGCTACTTCTAATAGTGCAGCCACAATATTTGGAAGGGAAAAATTCACCAACGGTGTCTGGACACTTAGGAGACTTTCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

298

Amino Acids

32.39

Weight (kDa)

9.24

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	8 - 247	7.1e-51	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26701
rosa_chinensis	RchiOBHm_Chr1g0370531 RchiOBHm_Chr4g0420291 RchiOBHm_Chr4g0421651 RchiOBHm_Chr4g0421661
rosa_laevigata	RLG00000007661 RLG00000027031
rosa_multiflora	Rmu_sc0022275.1_g000007 Rmu_sc0026595.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362880 Rroxscaffold_5G00362920
rosa_rugosa	Rorug01G0357400 Rorug04G0161800 Rorug04G0174200
rosa_samantha	Rh1AG366300 Rh1BG328900 Rh1BG329600 Rh1BG329800 Rh1CG342300 Rh1CG342400 Rh1CG343500 Rh1CG343700 Rh4BG236700 Rh4BG236800 Rh4CG248500 Rh4CG248600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	265, 479
AccB7I	CCANNNNNTGG	1 cut(s)	275
AciI	CCGC	1 cut(s)	673
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	2 cut(s)	56, 99
AfaI	GTAC	3 cut(s)	25, 136, 377
AfiI	CCNNNNNNNGG	4 cut(s)	162, 275, 295, 694
AgsI	TTSAA	9 cut(s)	203, 311, 351, 564, 589, 614, 629, 661, 891
AluBI	AGCT	5 cut(s)	40, 177, 331, 655, 716
AluI	AGCT	5 cut(s)	40, 177, 331, 655, 716
Alw21I	GWGCWC	2 cut(s)	322, 333
Alw26I	GTCTC	2 cut(s)	672, 877
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	2 cut(s)	297, 606
ApaI	GGGCCC	1 cut(s)	610
ApeKI	GCWGC	5 cut(s)	5, 488, 764, 812, 830
ApoI	RAATTY	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	4 cut(s)	278, 606, 607, 675
AsuHPI	GGTGA	2 cut(s)	553, 850
AvaII	GGWCC	2 cut(s)	278, 675
BaeGI	GKGCMC	1 cut(s)	610
BaeI	ACNNNNGTAYC	2 cut(s)	7, 40
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	2 cut(s)	265, 479
BanII	GRGCYC	2 cut(s)	333, 610
BbsI	GAAGAC	1 cut(s)	691
Bbv12I	GWGCWC	2 cut(s)	322, 333
BbvI	GCAGC	5 cut(s)	17, 475, 751, 799, 842
BccI	CCATC	3 cut(s)	160, 269, 415
BcoDI	GTCTC	2 cut(s)	672, 877
BfoI	RGCGCY	1 cut(s)	489
BisI	GCNGC	5 cut(s)	6, 489, 765, 813, 831
BlsI	GCNGC	5 cut(s)	7, 490, 766, 814, 832
Bme18I	GGWCC	2 cut(s)	278, 675
BmgT120I	GGNCC	4 cut(s)	278, 606, 607, 675
BmiI	GGNNCC	4 cut(s)	267, 481, 607, 608
BmsI	GCATC	2 cut(s)	576, 806
BpiI	GAAGAC	1 cut(s)	691
BpmI	CTGGAG	2 cut(s)	4, 557
BpuEI	CTTGAG	2 cut(s)	275, 725
BsaAI	YACGTR	2 cut(s)	379, 752
BsaJI	CCNNGG	3 cut(s)	156, 261, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 275, 295, 694
Bse118I	RCCGGY	2 cut(s)	83, 482
Bse1I	ACTGG	2 cut(s)	21, 269
BseDI	CCNNGG	3 cut(s)	156, 261, 462
BseGI	GGATG	5 cut(s)	55, 171, 535, 604, 797
BseLI	CCNNNNNNNGG	4 cut(s)	162, 275, 295, 694
BseNI	ACTGG	2 cut(s)	21, 269
BseRI	GAGGAG	1 cut(s)	32
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	5 cut(s)	17, 475, 751, 799, 842
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	849
BshFI	GGCC	2 cut(s)	299, 608
BshNI	GGYRCC	2 cut(s)	265, 479
BsiHKAI	GWGCWC	2 cut(s)	322, 333
BsiSI	CCGG	2 cut(s)	84, 483
BsiWI	CGTACG	1 cut(s)	375
BslI	CCNNNNNNNGG	4 cut(s)	162, 275, 295, 694
BsmAI	GTCTC	2 cut(s)	672, 877
BsnI	GGCC	2 cut(s)	299, 608
Bsp120I	GGGCCC	1 cut(s)	606
Bsp1286I	GDGCHC	3 cut(s)	322, 333, 610
Bsp143I	GATC	2 cut(s)	532, 742
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	2 cut(s)	299, 608
BspLI	GGNNCC	4 cut(s)	267, 481, 607, 608
BspPI	GGATC	1 cut(s)	750
BspQI	GCTCTTC	1 cut(s)	120
BspT107I	GGYRCC	2 cut(s)	265, 479
BsrFI	RCCGGY	2 cut(s)	83, 482
BsrI	ACTGG	2 cut(s)	21, 269
BssAI	RCCGGY	2 cut(s)	83, 482
BssECI	CCNNGG	3 cut(s)	156, 261, 462
BssMI	GATC	2 cut(s)	532, 742
BssT1I	CCWWGG	2 cut(s)	156, 261
Bst4CI	ACNGT	4 cut(s)	28, 139, 189, 866
Bst6I	CTCTTC	2 cut(s)	120, 609
BstBAI	YACGTR	2 cut(s)	379, 752
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	878
BstDSI	CCRYGG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	692
BstF5I	GGATG	5 cut(s)	55, 171, 535, 604, 797
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	2 cut(s)	535, 745
BstMAI	GTCTC	2 cut(s)	672, 877
BstMBI	GATC	2 cut(s)	532, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 764
BstSLI	GKGCMC	1 cut(s)	610
BstSNI	TACGTA	1 cut(s)	752
BstV1I	GCAGC	5 cut(s)	17, 475, 751, 799, 842
BstV2I	GAAGAC	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	299, 608
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	5 cut(s)	55, 171, 535, 604, 797
Cac8I	GCNNGC	1 cut(s)	484
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	2 cut(s)	83, 482
Cfr13I	GGNCC	4 cut(s)	278, 606, 607, 675
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	3 cut(s)	24, 135, 376
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviAII	CATG	5 cut(s)	46, 424, 520, 550, 637
CviQI	GTAC	3 cut(s)	24, 135, 376
DdeI	CTNAG	1 cut(s)	878
DpnI	GATC	2 cut(s)	534, 744
DpnII	GATC	2 cut(s)	532, 742
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	120, 609
EarI	CTCTTC	2 cut(s)	120, 609
Ecl136II	GAGCTC	1 cut(s)	331
Eco105I	TACGTA	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	156, 261
Eco24I	GRGCYC	2 cut(s)	333, 610
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	278, 675
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	56, 99
EcoICRI	GAGCTC	1 cut(s)	331
EcoNI	CCTNNNNNAGG	1 cut(s)	692
EcoO109I	RGGNCCY	2 cut(s)	606, 607
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	156, 261
EcoT38I	GRGCYC	2 cut(s)	333, 610
ErhI	CCWWGG	2 cut(s)	156, 261
FaeI	CATG	5 cut(s)	49, 427, 523, 553, 640
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	5 cut(s)	45, 423, 519, 549, 636
Fnu4HI	GCNGC	5 cut(s)	6, 489, 765, 813, 831
FokI	GGATG	5 cut(s)	62, 178, 542, 611, 784
FriOI	GRGCYC	2 cut(s)	333, 610
Fsp4HI	GCNGC	5 cut(s)	6, 489, 765, 813, 831
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	5 cut(s)	6, 489, 765, 813, 831
GsaI	CCCAGC	1 cut(s)	720
GsuI	CTGGAG	2 cut(s)	4, 557
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	299, 608
HapII	CCGG	2 cut(s)	84, 483
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	49, 427, 523, 553, 640
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	2 cut(s)	311, 665
HpaII	CCGG	2 cut(s)	84, 483
HphI	GGTGA	2 cut(s)	553, 850
Hpy166II	GTNNAC	2 cut(s)	185, 555
Hpy188I	TCNGA	3 cut(s)	36, 434, 739
Hpy188III	TCNNGA	3 cut(s)	209, 536, 871
Hpy8I	GTNNAC	2 cut(s)	185, 555
HpyAV	CCTTC	4 cut(s)	613, 655, 816, 840
HpyCH4III	ACNGT	4 cut(s)	28, 139, 189, 866
HpyCH4IV	ACGT	2 cut(s)	378, 751
HpyCH4V	TGCA	2 cut(s)	767, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 764
HpyF3I	CTNAG	1 cut(s)	878
HpySE526I	ACGT	2 cut(s)	378, 751
Hsp92II	CATG	5 cut(s)	49, 427, 523, 553, 640
HspAI	GCGC	1 cut(s)	486
KroI	GCCGGC	1 cut(s)	482
KroNI	GCCGGC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	532, 742
LguI	GCTCTTC	1 cut(s)	120
LmnI	GCTCC	3 cut(s)	45, 328, 794
Lsp1109I	GCAGC	5 cut(s)	17, 475, 751, 799, 842
LweI	GCATC	2 cut(s)	576, 806
MaeII	ACGT	2 cut(s)	378, 751
MaeIII	GTNAC	2 cut(s)	379, 511
MalI	GATC	2 cut(s)	534, 744
MboI	GATC	2 cut(s)	532, 742
MboII	GAAGA	4 cut(s)	107, 626, 691, 721
MhlI	GDGCHC	3 cut(s)	322, 333, 610
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	2 cut(s)	355, 854
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	7 cut(s)	53, 299, 440, 532, 733, 769, 811
Mox20I	TGGCCA	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	524, 572
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	2 cut(s)	84, 483
MwoI	GCNNNNNNNGC	2 cut(s)	488, 764
NaeI	GCCGGC	1 cut(s)	484
NdeII	GATC	2 cut(s)	532, 742
NgoMIV	GCCGGC	1 cut(s)	482
NlaIII	CATG	5 cut(s)	49, 427, 523, 553, 640
NlaIV	GGNNCC	4 cut(s)	267, 481, 607, 608
NmuCI	GTSAC	2 cut(s)	379, 511
PciSI	GCTCTTC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	311
Pfl23II	CGTACG	1 cut(s)	375
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	5 cut(s)	7, 490, 766, 814, 832
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
Ppu21I	YACGTR	2 cut(s)	379, 752
Psp124BI	GAGCTC	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	716
PspLI	CGTACG	1 cut(s)	375
PspN4I	GGNNCC	4 cut(s)	267, 481, 607, 608
PspOMI	GGGCCC	1 cut(s)	606
PspPI	GGNCC	4 cut(s)	278, 606, 607, 675
RsaI	GTAC	3 cut(s)	25, 136, 377
RsaNI	GTAC	3 cut(s)	24, 135, 376
RseI	CAYNNNNRTG	2 cut(s)	524, 572
SacI	GAGCTC	1 cut(s)	333
SapI	GCTCTTC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	5 cut(s)	6, 489, 765, 813, 831
Sau3AI	GATC	2 cut(s)	532, 742
Sau96I	GGNCC	4 cut(s)	278, 606, 607, 675
SchI	GAGTC	1 cut(s)	674
SduI	GDGCHC	3 cut(s)	322, 333, 610
SfaNI	GCATC	2 cut(s)	576, 806
SinI	GGWCC	2 cut(s)	278, 675
SmiMI	CAYNNNNRTG	2 cut(s)	524, 572
SmlI	CTYRAG	2 cut(s)	290, 704
SmoI	CTYRAG	2 cut(s)	290, 704
SnaBI	TACGTA	1 cut(s)	752
Sse9I	AATT	2 cut(s)	355, 854
SsiI	CCGC	1 cut(s)	673
SspI	AATATT	1 cut(s)	840
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	2 cut(s)	156, 261
TaaI	ACNGT	4 cut(s)	28, 139, 189, 866
TaiI	ACGT	2 cut(s)	381, 754
TaqI	TCGA	1 cut(s)	322
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	355, 854
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	379, 511
TseI	GCWGC	5 cut(s)	5, 488, 764, 812, 830
Tsp45I	GTSAC	2 cut(s)	379, 511
TspDTI	ATGAA	4 cut(s)	405, 411, 440, 777
TspGWI	ACGGA	1 cut(s)	479
Van91I	CCANNNNNTGG	1 cut(s)	275
VpaK11BI	GGWCC	2 cut(s)	278, 675
XagI	CCTNNNNNAGG	1 cut(s)	692
XapI	RAATTY	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.