Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006852

Physical Location & Seq

Genomic Coordinates Forward (+)

13467625 .. 13468273

Gene Structure 649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G26701.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAAGATAGAGAAGATGGAACGAGACATGCAGACAAAAGAGGACTTGAAAACCGTGGCGTTGGGCACCTCTAAGATCAACTACATGGATCCTAGGATCACGGTCGCATGGTGCAAACGTCATGAAGCACCCATTGAAAAGATATTCAACAAGTCACTTCTGGAGAAATTTGCGTGGGCAATGGACGTAGAACCTCACTTCACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

69

Amino Acids

8.22

Weight (kDa)

7.88

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topo_C_assoc	PF14370	2 - 69	2.1e-36	C-terminal topoisomerase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26701
rosa_chinensis	RchiOBHm_Chr1g0370531 RchiOBHm_Chr4g0420291 RchiOBHm_Chr4g0421651 RchiOBHm_Chr4g0421661
rosa_laevigata	RLG00000007661 RLG00000027031
rosa_multiflora	Rmu_sc0022275.1_g000007 Rmu_sc0026595.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362880 Rroxscaffold_5G00362920
rosa_rugosa	Rorug01G0357400 Rorug04G0161800 Rorug04G0174200
rosa_samantha	Rh1AG366300 Rh1BG328900 Rh1BG329600 Rh1BG329800 Rh1CG342300 Rh1CG342400 Rh1CG343500 Rh1CG343700 Rh4BG236700 Rh4BG236800 Rh4CG248500 Rh4CG248600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	65
AclWI	GGATC	3 cut(s)	83, 96, 104
AcsI	RAATTY	1 cut(s)	167
AgsI	TTSAA	3 cut(s)	49, 137, 148
Alw26I	GTCTC	1 cut(s)	18
AlwI	GGATC	3 cut(s)	83, 96, 104
ApoI	RAATTY	1 cut(s)	167
AspA2I	CCTAGG	1 cut(s)	92
AvrII	CCTAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	65
BccI	CCATC	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	93
BlnI	CCTAGG	1 cut(s)	92
BmiI	GGNNCC	2 cut(s)	67, 90
BpmI	CTGGAG	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	54, 92
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	54, 92
BseMI	GCAATG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	105
BshNI	GGYRCC	1 cut(s)	65
BsiEI	CGRYCG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	75, 88, 96
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	67, 90
BspPI	GGATC	3 cut(s)	83, 96, 104
BspT107I	GGYRCC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	2 cut(s)	54, 92
BssMI	GATC	3 cut(s)	75, 88, 96
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	55, 103
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	78, 91, 99
BstMAI	GTCTC	1 cut(s)	18
BstMBI	GATC	3 cut(s)	75, 88, 96
BstMCI	CGRYCG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BtgI	CCRYGG	1 cut(s)	54
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	4 cut(s)	28, 85, 108, 122
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	3 cut(s)	77, 90, 98
DpnII	GATC	3 cut(s)	75, 88, 96
Eco130I	CCWWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	31, 88, 111, 125
FaiI	YATR	4 cut(s)	29, 86, 109, 123
FatI	CATG	4 cut(s)	27, 84, 107, 121
FspBI	CTAG	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	182
Hin1II	CATG	4 cut(s)	31, 88, 111, 125
Hpy188III	TCNNGA	2 cut(s)	122, 161
HpyCH4III	ACNGT	2 cut(s)	55, 103
HpyCH4IV	ACGT	2 cut(s)	118, 186
HpyCH4V	TGCA	2 cut(s)	31, 114
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	2 cut(s)	118, 186
Hsp92II	CATG	4 cut(s)	31, 88, 111, 125
Kzo9I	GATC	3 cut(s)	75, 88, 96
LpnPI	CCDG	1 cut(s)	146
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	2 cut(s)	118, 186
MaeIII	GTNAC	1 cut(s)	153
MalI	GATC	3 cut(s)	77, 90, 98
MboI	GATC	3 cut(s)	75, 88, 96
MboII	GAAGA	2 cut(s)	16, 25
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	167
MnlI	CCTC	3 cut(s)	34, 79, 204
NdeII	GATC	3 cut(s)	75, 88, 96
NlaIII	CATG	4 cut(s)	31, 88, 111, 125
NlaIV	GGNNCC	2 cut(s)	67, 90
NmuCI	GTSAC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	31
PagI	TCATGA	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	67, 90
PsuI	RGATCY	1 cut(s)	88
Sau3AI	GATC	3 cut(s)	75, 88, 96
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	4 cut(s)	71, 121, 189, 196
Sse9I	AATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	55, 103
TaiI	ACGT	2 cut(s)	121, 189
TasI	AATT	1 cut(s)	167
TseFI	GTSAC	1 cut(s)	153
Tsp45I	GTSAC	1 cut(s)	153
TspDTI	ATGAA	2 cut(s)	17, 138
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	92
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.