Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006852

Physical Location & Seq

Genomic Coordinates Forward (+)

45945214 .. 45945538

Gene Structure 325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 129 bp

ATGATTGATCCTAGAATCACTGTTGCATGGTGCAGGAGACATGGAGTACCCATTGACAGTGTATTTCCAAAGTCCCTCTTGAGAAAGTTTGCTTGGGCAATGGATGTCGGCCCTGACTTCAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

42

Amino Acids

4.93

Weight (kDa)

10.03

Isoelectric Point (pI)

32.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topo_C_assoc	PF14370	2 - 42	6.6e-19	C-terminal topoisomerase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26701
rosa_chinensis	RchiOBHm_Chr1g0370531 RchiOBHm_Chr4g0420291 RchiOBHm_Chr4g0421651 RchiOBHm_Chr4g0421661
rosa_laevigata	RLG00000007661 RLG00000027031
rosa_multiflora	Rmu_sc0022275.1_g000007 Rmu_sc0026595.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362880 Rroxscaffold_5G00362920
rosa_rugosa	Rorug01G0357400 Rorug04G0161800 Rorug04G0174200
rosa_samantha	Rh1AG366300 Rh1BG328900 Rh1BG329600 Rh1BG329800 Rh1CG342300 Rh1CG342400 Rh1CG343500 Rh1CG343700 Rh4BG236700 Rh4BG236800 Rh4CG248500 Rh4CG248600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AcuI	CTGAAG	1 cut(s)	103
AfaI	GTAC	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	76, 108
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	105
BseGI	GGATG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	2
BsrDI	GCAATG	1 cut(s)	105
BssMI	GATC	1 cut(s)	7
Bst4CI	ACNGT	2 cut(s)	22, 59
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	18, 64
CaiI	CAGNNNCTG	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	27, 41
CviJI	RGCY	1 cut(s)	111
CviKI_1	RGCY	1 cut(s)	111
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	103
FaeI	CATG	2 cut(s)	30, 44
FaiI	YATR	2 cut(s)	28, 42
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	26, 40
FokI	GGATG	1 cut(s)	116
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	30, 44
HinfI	GANTC	2 cut(s)	15, 123
Hpy188I	TCNGA	2 cut(s)	122, 128
Hpy188III	TCNNGA	1 cut(s)	79
HpyCH4III	ACNGT	2 cut(s)	22, 59
HpyCH4V	TGCA	2 cut(s)	26, 33
Hsp92II	CATG	2 cut(s)	30, 44
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	1 cut(s)	19
MaeI	CTAG	1 cut(s)	12
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MnlI	CCTC	1 cut(s)	86
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	2 cut(s)	30, 44
PfeI	GAWTC	2 cut(s)	15, 123
PspPI	GGNCC	1 cut(s)	110
PstNI	CAGNNNCTG	1 cut(s)	126
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	110
SgeI	CNNG	7 cut(s)	24, 39, 46, 53, 91, 105, 125
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
SspMI	CTAG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	22, 59
TfiI	GAWTC	2 cut(s)	15, 123
TscAI	CASTG	2 cut(s)	25, 64
TspRI	CASTG	2 cut(s)	25, 64
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.