Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006852

Physical Location & Seq

Genomic Coordinates Reverse (-)

47300457 .. 47300774

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39129

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATGAAAAATGTAATTTTACATGAACCCTCATGTTTGGAGTTTCGCTTTACTGGGAAAACATCAGTCGACTACGAGAATGAGGTTGAAGTTGAAAACCTTATGTTTAATTGCATTGAAGAATTCCATCTTGGGAAATCTCCTGAAGACAATTTGTTTGACAAGTTGGATGACAAAAAATTGAATAGATATTTACAAAACTTGGGAAAACCTTTTGGTCTCCATTTTACAGCAAAGACATTCCGCGTATTTCGAGCATCTGAAATGATGGATGATTTGTTGAACAAGAGAGTTGAAGGAGAAAACAGAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

105

Amino Acids

12.51

Weight (kDa)

5.92

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topoisom_I	PF01028	3 - 97	3.1e-22	Eukaryotic DNA topoisomerase I, catalytic core

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26701
rosa_chinensis	RchiOBHm_Chr1g0370531 RchiOBHm_Chr4g0420291 RchiOBHm_Chr4g0421651 RchiOBHm_Chr4g0421661
rosa_laevigata	RLG00000007661 RLG00000027031
rosa_multiflora	Rmu_sc0022275.1_g000007 Rmu_sc0026595.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362880 Rroxscaffold_5G00362920
rosa_rugosa	Rorug01G0357400 Rorug04G0161800 Rorug04G0174200
rosa_samantha	Rh1AG366300 Rh1BG328900 Rh1BG329600 Rh1BG329800 Rh1CG342300 Rh1CG342400 Rh1CG343500 Rh1CG343700 Rh4BG236700 Rh4BG236800 Rh4CG248500 Rh4CG248600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	246
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	165
AgsI	TTSAA	6 cut(s)	89, 95, 119, 184, 283, 296
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
Alw26I	GTCTC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	122
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
BbsI	GAAGAC	1 cut(s)	153
BccI	CCATC	2 cut(s)	135, 262
BcoDI	GTCTC	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	266
BmuI	ACTGGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	175, 277
BseNI	ACTGG	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	175, 277
BstFNI	CGCG	1 cut(s)	246
BstMAI	GTCTC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	175, 277
CviAII	CATG	2 cut(s)	23, 33
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	122
FaeI	CATG	2 cut(s)	26, 36
FaiI	YATR	3 cut(s)	24, 34, 104
FatI	CATG	2 cut(s)	22, 32
FblI	GTMKAC	1 cut(s)	69
FokI	GGATG	2 cut(s)	182, 284
Hin1II	CATG	2 cut(s)	26, 36
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	26, 36
LpnPI	CCDG	2 cut(s)	39, 156
LweI	GCATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	131, 158
MluCI	AATT	5 cut(s)	15, 109, 122, 151, 179
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	40, 76
MseI	TTAA	1 cut(s)	108
MvnI	CGCG	1 cut(s)	246
NlaIII	CATG	2 cut(s)	26, 36
SalI	GTCGAC	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	108
SetI	ASST	3 cut(s)	87, 102, 214
SfaNI	GCATC	1 cut(s)	266
Sse9I	AATT	5 cut(s)	15, 109, 122, 151, 179
SsiI	CCGC	1 cut(s)	244
TaqI	TCGA	2 cut(s)	69, 253
TasI	AATT	5 cut(s)	15, 109, 122, 151, 179
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	20, 39
XapI	RAATTY	1 cut(s)	122
XmiI	GTMKAC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.