Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006852

Physical Location & Seq

Genomic Coordinates Forward (+)

43964406 .. 43966321

Gene Structure 1916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACTAATCGGATTGCAAGTATCAAAAGGGTTATTATCAGTCAGAATGAGGACATCGAAATAGTGAATAAATTGCCAACAGCCACAAGGATTGATCCTAGAATCACTGTTGCATGGTGCAGGAGACATGGAGTTCCCATTGACAGTGTATTTTCAAAGTCCCTCTTGAGAAAGTTTGCTTGGGCAATGGCTGTCAGCCCTGACTTCAGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0003674 GO:0003824 GO:0003916 GO:0003917 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006260 GO:0006265 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006996 GO:0007059 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016853 GO:0031298 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0051276 GO:0070013 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Topo_C_assoc Topoisom_I Topoisom_I_N

Protein Analysis

71

Amino Acids

8.18

Weight (kDa)

10.84

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Topo_C_assoc	PF14370	30 - 71	5e-19	C-terminal topoisomerase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26701
rosa_chinensis	RchiOBHm_Chr1g0370531 RchiOBHm_Chr4g0420291 RchiOBHm_Chr4g0421651 RchiOBHm_Chr4g0421661
rosa_laevigata	RLG00000007661 RLG00000027031
rosa_multiflora	Rmu_sc0022275.1_g000007 Rmu_sc0026595.1_g000002
rosa_roxburghii	Rroxscaffold_5G00362880 Rroxscaffold_5G00362920
rosa_rugosa	Rorug01G0357400 Rorug04G0161800 Rorug04G0174200
rosa_samantha	Rh1AG366300 Rh1BG328900 Rh1BG329600 Rh1BG329800 Rh1CG342300 Rh1CG342400 Rh1CG343500 Rh1CG343700 Rh4BG236700 Rh4BG236800 Rh4CG248500 Rh4CG248600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	156
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	89
AlwNI	CAGNNNCTG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	89
BsrDI	GCAATG	1 cut(s)	192
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	109, 146
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	105, 151
CaiI	CAGNNNCTG	1 cut(s)	213
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	2 cut(s)	114, 128
CviJI	RGCY	3 cut(s)	83, 191, 198
CviKI_1	RGCY	3 cut(s)	83, 191, 198
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	190
FaeI	CATG	2 cut(s)	117, 131
FaiI	YATR	2 cut(s)	115, 129
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	113, 127
FspBI	CTAG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	117, 131
HinfI	GANTC	2 cut(s)	102, 210
Hpy188I	TCNGA	4 cut(s)	12, 45, 209, 215
Hpy188III	TCNNGA	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	109, 146
HpyCH4V	TGCA	3 cut(s)	17, 113, 120
Hsp92II	CATG	2 cut(s)	117, 131
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	1 cut(s)	106
MaeI	CTAG	1 cut(s)	99
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MluCI	AATT	1 cut(s)	71
MnlI	CCTC	2 cut(s)	43, 173
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	117, 131
PfeI	GAWTC	2 cut(s)	102, 210
PstNI	CAGNNNCTG	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	94
SgeI	CNNG	9 cut(s)	30, 99, 111, 126, 133, 140, 178, 192, 212
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	1 cut(s)	71
SspMI	CTAG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	109, 146
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	102, 210
TscAI	CASTG	2 cut(s)	112, 151
TspRI	CASTG	2 cut(s)	112, 151
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.