Rmu_sc0002603.1_g000009

Outer envelope pore protein 16-2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002603.1
OG0011960
Physical Location & Seq
Forward (+)
38933 .. 40404
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
atgttgggtagcgggggcagtgtaaacactcatatcgaggcttcatcaaagccctcgtcgttcgagttccctggattcgacaagggtggcatgttcgacctcggccaccctctcctcaaccgcatcgccgagagctttgtcaaagccgctgggatcggagctattcaggctgtctcacgtgaggcttatttcactgccactgaaggacttgattcaactagtggaattccgccggaaatttcaggccacaaaaagaatcgcttcccaaacctcagaggggataacaacagaaaatctcttgaagctatgtcactgattagggatcaaaacgtttactttcaggtgaagcacactggaaaggaatctttacaatgggggctagctgcaggggtgtactcaggccttacttatggactgaaggaggctcgtggagcccatgactggaaaaacagtgcagttgcaggagcaattaccggtgtggctctggcactcacatccgacagttcctcacacgagcagattgtgcaatgtgctatcactggagctgccatttccaccgctgcaaatcttctctctggaatattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

195

Amino Acids

20.47

Weight (kDa)

7.02

Isoelectric Point (pI)

27.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 39 - 185 8.9e-15 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G16160 AT4G16160
fragaria_vesca FvH4_4g19460
malus_domestica MD13G1156400.v1.1 MD16G1157300.v1.1
prunus_persica Prupe.1G122200_v2.0.a1 Prupe.1G122200_v2.0.a1
pyrus_communis pycom13g13380
rosa_chinensis RchiOBHm_Chr4g0424511
rosa_laevigata RLG00000007467
rosa_multiflora Rmu_sc0002603.1_g000009 Rmu_sc0003942.1_g000024
rosa_roxburghii Rroxscaffold_5G00366440
rosa_rugosa Rorug04G0198000
rosa_samantha Rh4AG254500 Rh4BG259900 Rh4CG271000 Rh4DG254300
rosa_wichuraiana Rw4G021980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 12, 121, 147, 230, 558
AclI AACGTT 1 cut(s) 330
AclWI GGATC 2 cut(s) 161, 330
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 2 cut(s) 225, 237
AcuI CTGAAG 2 cut(s) 222, 437
AcvI CACGTG 1 cut(s) 179
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 277, 441
AgeI ACCGGT 1 cut(s) 473
AgsI TTSAA 2 cut(s) 216, 302
AhlI ACTAGT 1 cut(s) 218
AjnI CCWGG 1 cut(s) 70
AluBI AGCT 5 cut(s) 135, 161, 305, 383, 545
AluI AGCT 5 cut(s) 135, 161, 305, 383, 545
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 2 cut(s) 161, 330
AoxI GGCC 3 cut(s) 103, 244, 400
ApeKI GCWGC 3 cut(s) 383, 545, 560
ApoI RAATTY 2 cut(s) 225, 237
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AsiGI ACCGGT 1 cut(s) 473
Asp700I GAANNNNTTC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 355
AsuNHI GCTAGC 1 cut(s) 379
BanII GRGCYC 1 cut(s) 436
BauI CACGAG 2 cut(s) 426, 512
BbrPI CACGTG 1 cut(s) 179
BbvI GCAGC 3 cut(s) 370, 532, 547
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 178
BcuI ACTAGT 1 cut(s) 218
BfaI CTAG 2 cut(s) 219, 380
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 4 cut(s) 147, 384, 546, 561
BlsI GCNGC 4 cut(s) 148, 385, 547, 562
Bme1390I CCNGG 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 132
BmtI GCTAGC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 561
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 70, 100
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 441
Bse118I RCCGGY 1 cut(s) 473
Bse1I ACTGG 3 cut(s) 358, 446, 544
Bse3DI GCAATG 1 cut(s) 533
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 70, 100
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 277, 441
BseMI GCAATG 1 cut(s) 533
BseMII CTCAG 2 cut(s) 286, 411
BseNI ACTGG 3 cut(s) 358, 446, 544
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 370, 532, 547
BseYI CCCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 3 cut(s) 105, 246, 402
BshTI ACCGGT 1 cut(s) 473
BsiSI CCGG 2 cut(s) 233, 474
BslI CCNNNNNNNGG 2 cut(s) 277, 441
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 3 cut(s) 105, 246, 402
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 2 cut(s) 153, 322
BspACI CCGC 5 cut(s) 12, 121, 147, 230, 558
BspANI GGCC 3 cut(s) 105, 246, 402
BspCNI CTCAG 2 cut(s) 285, 410
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 388
BspOI GCTAGC 1 cut(s) 383
BspPI GGATC 2 cut(s) 161, 330
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 473
BsrI ACTGG 3 cut(s) 358, 446, 544
BssAI RCCGGY 1 cut(s) 473
BssECI CCNNGG 2 cut(s) 70, 100
BssMI GATC 2 cut(s) 153, 322
BssSI CACGAG 2 cut(s) 426, 512
Bst2BI CACGAG 2 cut(s) 426, 512
Bst2UI CCWGG 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 452, 503
BstAPI GCANNNNNTGC 1 cut(s) 523
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 272, 397
BstF5I GGATG 1 cut(s) 494
BstKTI GATC 2 cut(s) 156, 325
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 2 cut(s) 153, 322
BstMWI GCNNNNNNNGC 3 cut(s) 167, 431, 523
BstNI CCWGG 1 cut(s) 72
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 370, 532, 547
BsuRI GGCC 3 cut(s) 105, 246, 402
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 2 cut(s) 25, 192
BtsIMutI CAGTG 7 cut(s) 25, 192, 198, 311, 351, 457, 537
Cac8I GCNNGC 1 cut(s) 381
Cfr10I RCCGGY 1 cut(s) 473
Csp6I GTAC 1 cut(s) 394
CspAI ACCGGT 1 cut(s) 473
CviAII CATG 2 cut(s) 91, 437
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 2 cut(s) 272, 397
DpnI GATC 2 cut(s) 155, 324
DpnII GATC 2 cut(s) 153, 322
EaeI YGGCCR 1 cut(s) 103
EciI GGCGGA 1 cut(s) 219
Eco147I AGGCCT 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 436
Eco57I CTGAAG 2 cut(s) 222, 437
Eco72I CACGTG 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 436
FaeI CATG 2 cut(s) 94, 440
FaiI YATR 5 cut(s) 33, 92, 308, 411, 438
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 2 cut(s) 90, 436
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 4 cut(s) 147, 384, 546, 561
FokI GGATG 1 cut(s) 481
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 4 cut(s) 147, 384, 546, 561
FspBI CTAG 2 cut(s) 219, 380
GluI GCNGC 4 cut(s) 147, 384, 546, 561
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 3 cut(s) 105, 246, 402
HapII CCGG 2 cut(s) 233, 474
Hin1II CATG 2 cut(s) 94, 440
HinfI GANTC 4 cut(s) 75, 212, 256, 362
HpaII CCGG 2 cut(s) 233, 474
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 3 cut(s) 25, 334, 394
Hpy188I TCNGA 3 cut(s) 158, 275, 499
Hpy188III TCNNGA 2 cut(s) 299, 576
Hpy8I GTNNAC 3 cut(s) 25, 334, 394
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 197, 412
HpyCH4III ACNGT 2 cut(s) 452, 503
HpyCH4IV ACGT 2 cut(s) 178, 330
HpyCH4V TGCA 5 cut(s) 386, 455, 461, 526, 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 431, 523
HpyF3I CTNAG 2 cut(s) 272, 397
HpySE526I ACGT 2 cut(s) 178, 330
Hsp92II CATG 2 cut(s) 94, 440
Kzo9I GATC 2 cut(s) 153, 322
LmnI GCTCC 4 cut(s) 158, 431, 464, 542
Lsp1109I GCAGC 3 cut(s) 370, 532, 547
LweI GCATC 1 cut(s) 132
MaeI CTAG 2 cut(s) 219, 380
MaeII ACGT 2 cut(s) 178, 330
MaeIII GTNAC 1 cut(s) 309
MalI GATC 2 cut(s) 155, 324
MboI GATC 2 cut(s) 153, 322
MboII GAAGA 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 3 cut(s) 225, 237, 468
MmeI TCCRAC 1 cut(s) 522
MroXI GAANNNNTTC 1 cut(s) 260
MspA1I CMGCKG 2 cut(s) 149, 560
MspI CCGG 2 cut(s) 233, 474
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 3 cut(s) 167, 431, 523
NdeII GATC 2 cut(s) 153, 322
NheI GCTAGC 1 cut(s) 379
NlaIII CATG 2 cut(s) 94, 440
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 2 cut(s) 81, 154
NmuCI GTSAC 1 cut(s) 309
NspI RCATGY 1 cut(s) 94
PceI AGGCCT 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 4 cut(s) 75, 212, 256, 362
PinAI ACCGGT 1 cut(s) 473
PkrI GCNGC 4 cut(s) 148, 385, 547, 562
PmaCI CACGTG 1 cut(s) 179
PmlI CACGTG 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 179
Psp1406I AACGTT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 70
PspCI CACGTG 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 433
PstI CTGCAG 1 cut(s) 388
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SatI GCNGC 4 cut(s) 147, 384, 546, 561
Sau3AI GATC 2 cut(s) 153, 322
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 384
SpeI ACTAGT 1 cut(s) 218
Sse9I AATT 3 cut(s) 225, 237, 468
SseBI AGGCCT 1 cut(s) 402
SsiI CCGC 5 cut(s) 12, 121, 147, 230, 558
SspI AATATT 1 cut(s) 582
SspMI CTAG 2 cut(s) 219, 380
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 70
TaaI ACNGT 2 cut(s) 452, 503
TaiI ACGT 2 cut(s) 181, 333
TaqI TCGA 4 cut(s) 36, 63, 78, 96
TasI AATT 3 cut(s) 225, 237, 468
TatI WGTACW 1 cut(s) 393
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 4 cut(s) 75, 212, 256, 362
TscAI CASTG 7 cut(s) 25, 199, 205, 318, 358, 457, 544
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 3 cut(s) 383, 545, 560
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 7 cut(s) 25, 199, 205, 318, 358, 457, 544
XapI RAATTY 2 cut(s) 225, 237
XceI RCATGY 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 2 cut(s) 219, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.