Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002606.1

Orthogroup ID

OG0013746

Physical Location & Seq

Genomic Coordinates Reverse (-)

22683 .. 25274

Gene Structure 2592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002606.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgttgggaaatcagcttttatccgtgctttactgggatccagttgctgcatcagcgcaaaagtacaaaccaatacaatctgctgttcctggaactaccttgggtccaattcaaatgaacgctttcttaggaggagggaaattatatgacacatctggagttcatatccaccataggcaagcagcagtggttcattcagaagacctcccttcccttgctccacaaagtcagcttaggggtcaatacatatgctttgtaaaagggcaccaagctttgaattctgggcaataccctgtggtggtgagcacttggcctttcgtagaggctgtcagagctgcttggagggctgttgataatgggctttctgcagttgatgcagttgttgagggctgttcggcttgtgaggaactcagatgtgatggtacaggtgaaagcttcaatctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

148

Amino Acids

15.84

Weight (kDa)

5.89

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0373731 RchiOBHm_Chr1g0373881
rosa_multiflora	Rmu_sc0002606.1_g000004 Rmu_sc0009236.1_g000011
rosa_roxburghii	Rroxscaffold_4G00283950
rosa_rugosa	Rorug01G0379300 Rorug01G0379400
rosa_samantha	Rh1AG388700 Rh1AG389500 Rh1AG389700 Rh1BG353700 Rh1BG353900 Rh1CG367000 Rh1CG367100 Rh1CG374300 Rh1DG383400 Rh1DG384700
rosa_wichuraiana	Rw1G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	264
AclWI	GGATC	2 cut(s)	32, 45
AcsI	RAATTY	1 cut(s)	277
AfaI	GTAC	2 cut(s)	65, 424
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	3 cut(s)	113, 277, 439
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	5 cut(s)	16, 232, 272, 335, 435
AluI	AGCT	5 cut(s)	16, 232, 272, 335, 435
Alw21I	GWGCWC	1 cut(s)	308
AlwI	GGATC	2 cut(s)	32, 45
AlwNI	CAGNNNCTG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	3 cut(s)	47, 182, 335
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	313, 440
AvaII	GGWCC	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	264
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	34, 194, 322
BccI	CCATC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	366
BisI	GCNGC	3 cut(s)	48, 183, 336
BlsI	GCNGC	3 cut(s)	49, 184, 337
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	104
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	39, 105, 266
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	59, 364
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	2 cut(s)	38, 41
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	2 cut(s)	38, 41
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	3 cut(s)	34, 194, 322
BshFI	GGCC	1 cut(s)	313
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	1 cut(s)	313
Bsp1286I	GDGCHC	2 cut(s)	267, 308
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	3 cut(s)	39, 105, 266
BspMAI	CTGCAG	1 cut(s)	370
BspPI	GGATC	2 cut(s)	32, 45
BspT107I	GGYRCC	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	38, 41
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	127, 233, 410
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 332, 344, 374
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	34, 194, 322
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	47
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	64, 423
CviQI	GTAC	2 cut(s)	64, 423
DdeI	CTNAG	3 cut(s)	127, 233, 410
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	104
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	6 cut(s)	145, 147, 165, 174, 248, 250
FauNDI	CATATG	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	48, 183, 336
Fsp4HI	GCNGC	3 cut(s)	48, 183, 336
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	3 cut(s)	48, 183, 336
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HindIII	AAGCTT	2 cut(s)	270, 433
HphI	GGTGA	2 cut(s)	313, 440
Hpy188I	TCNGA	3 cut(s)	199, 332, 413
Hpy188III	TCNNGA	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	50, 368, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 332, 344, 374
HpyF3I	CTNAG	3 cut(s)	127, 233, 410
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	8 cut(s)	19, 54, 75, 102, 141, 267, 306, 411
Lsp1109I	GCAGC	3 cut(s)	34, 194, 322
LweI	GCATC	2 cut(s)	59, 364
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	267, 308
MluCI	AATT	3 cut(s)	108, 140, 277
MnlI	CCTC	7 cut(s)	125, 128, 215, 316, 336, 379, 397
MroXI	GAANNNNTTC	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	53, 332, 344, 374
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	1 cut(s)	37
NlaIV	GGNNCC	3 cut(s)	39, 105, 266
PdmI	GAANNNNTTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	49, 184, 337
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	3 cut(s)	39, 105, 266
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	47
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	2 cut(s)	65, 424
RsaNI	GTAC	2 cut(s)	64, 423
SatI	GCNGC	3 cut(s)	48, 183, 336
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	2 cut(s)	267, 308
SetI	ASST	8 cut(s)	18, 101, 207, 234, 274, 337, 430, 437
SfaNI	GCATC	2 cut(s)	59, 364
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	104
Sse9I	AATT	3 cut(s)	108, 140, 277
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	99
TasI	AATT	3 cut(s)	108, 140, 277
TatI	WGTACW	1 cut(s)	63
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	3 cut(s)	47, 182, 335
TspDTI	ATGAA	3 cut(s)	131, 152, 182
TspGWI	ACGGA	1 cut(s)	13
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	104
XapI	RAATTY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.