Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0013746

Physical Location & Seq

Genomic Coordinates Reverse (-)

48591810 .. 48592607

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG353900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGGAAAAGGATCCAGTTGCTGCATCGGCGGAAAAGGATCCAGTTGTTGCATCAGCGCAAAAGTACAAACCAATACAATTTGCTGTTCTTGGAACTACCTTGGGTCCAATTCAAATGAACGCTTTCTTAGGAGGAGGGAAATTATATGACACATCGGGAGTTCATCTCCACCATAGGCAAGCAGCAGTGGTTCATTCAGAAGACCTACCTTCCCTTGCTCCACAAAGTCAGCTTCGGGGTCAATCATATCAATACATTTGCTTCGTATATAGTACCAAGAATATGATATTTGGATTCTCAATTCCAGCCTTTCCAGGAGATGTTTTACCTTACCATGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

115

Amino Acids

12.45

Weight (kDa)

6.49

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013746)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0373731 RchiOBHm_Chr1g0373881
rosa_multiflora	Rmu_sc0002606.1_g000004 Rmu_sc0009236.1_g000011
rosa_roxburghii	Rroxscaffold_4G00283950
rosa_rugosa	Rorug01G0379300 Rorug01G0379400
rosa_samantha	Rh1AG388700 Rh1AG389500 Rh1AG389700 Rh1BG353700 Rh1BG353900 Rh1CG367000 Rh1CG367100 Rh1CG374300 Rh1DG383400 Rh1DG384700
rosa_wichuraiana	Rw1G034570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 32
AclWI	GGATC	4 cut(s)	8, 21, 35, 48
AfaI	GTAC	2 cut(s)	68, 277
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	116
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	4 cut(s)	8, 21, 35, 48
AlwNI	CAGNNNCTG	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	23, 185
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	107
BamHI	GGATCC	2 cut(s)	13, 40
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	10, 197
BciT130I	CCWGG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	24, 186
BlsI	GCNGC	2 cut(s)	25, 187
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	3 cut(s)	15, 42, 108
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	2 cut(s)	35, 62
BpiI	GAAGAC	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
BsaJI	CCNNGG	2 cut(s)	102, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	17, 44
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	102, 337
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	17, 44
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	10, 197
BslI	CCNNNNNNNGG	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	13, 40
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	2 cut(s)	5, 32
BspLI	GGNNCC	3 cut(s)	15, 42, 108
BspPI	GGATC	4 cut(s)	8, 21, 35, 48
BsrI	ACTGG	2 cut(s)	17, 44
BssECI	CCNNGG	2 cut(s)	102, 337
BssMI	GATC	2 cut(s)	13, 40
BssT1I	CCWWGG	2 cut(s)	102, 337
Bst2UI	CCWGG	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	16, 43
BstMBI	GATC	2 cut(s)	13, 40
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	10, 197
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	2 cut(s)	13, 40
BstYI	RGATCY	2 cut(s)	13, 40
BtgI	CCRYGG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	183
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	67, 276
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	2 cut(s)	235, 311
CviKI_1	RGCY	2 cut(s)	235, 311
CviQI	GTAC	2 cut(s)	67, 276
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	2 cut(s)	15, 42
DpnII	GATC	2 cut(s)	13, 40
EciI	GGCGGA	2 cut(s)	20, 47
Eco130I	CCWWGG	2 cut(s)	102, 337
Eco47I	GGWCC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	2 cut(s)	102, 337
ErhI	CCWWGG	2 cut(s)	102, 337
FaeI	CATG	1 cut(s)	341
FaiI	YATR	8 cut(s)	148, 150, 177, 250, 271, 273, 287, 339
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	2 cut(s)	24, 186
Fsp4HI	GCNGC	2 cut(s)	24, 186
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	24, 186
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	26, 53
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	13, 40
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	5 cut(s)	30, 57, 303, 321, 330
Lsp1109I	GCAGC	2 cut(s)	10, 197
LweI	GCATC	2 cut(s)	35, 62
MalI	GATC	2 cut(s)	15, 42
MboI	GATC	2 cut(s)	13, 40
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	2 cut(s)	13, 40
MluCI	AATT	4 cut(s)	80, 111, 143, 303
MnlI	CCTC	2 cut(s)	128, 131
MroXI	GAANNNNTTC	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	2 cut(s)	13, 40
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	15, 42, 108
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	316
PkrI	GCNGC	2 cut(s)	25, 187
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	3 cut(s)	15, 42, 108
PspPI	GGNCC	1 cut(s)	107
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	2 cut(s)	13, 40
RsaI	GTAC	2 cut(s)	68, 277
RsaNI	GTAC	2 cut(s)	67, 276
SatI	GCNGC	2 cut(s)	24, 186
Sau3AI	GATC	2 cut(s)	13, 40
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	5 cut(s)	104, 210, 214, 237, 334
SfaNI	GCATC	2 cut(s)	35, 62
SinI	GGWCC	1 cut(s)	107
Sse9I	AATT	4 cut(s)	80, 111, 143, 303
SsiI	CCGC	2 cut(s)	5, 32
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	2 cut(s)	102, 337
TasI	AATT	4 cut(s)	80, 111, 143, 303
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	195
TseI	GCWGC	2 cut(s)	23, 185
TspDTI	ATGAA	3 cut(s)	134, 155, 185
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.