Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002610.1

Orthogroup ID

OG0019066

Physical Location & Seq

Genomic Coordinates Reverse (-)

26946 .. 27871

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcgagaacagatatcaatagcagagacaggagatggtctcttgaggggatgactgcactcgtcaccggtggaaccaaagggattggccctgcgttccagcctgctgccaccgaagcatccctgctgcgcaaacaagccaacgcacacccactgcatctttttcccgttcctgtgcacatccgtctacttgcaagcctcgaaacgtctagttcggaagctcagatcgaaaaactttattcatcaaagttgttcgtctgcgtctcatctttcggacctcaaaatttcagccctattggagcagtttggcaacttgtacaccaatcaaagcaggagctgttcagaaacaaatttgctccgaatttcaacaagcttgaccttatagacattcactgcacgcctttactcggattgcttcgctccatcacgcctgcatcgacacgcgcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00960 ko01100 ko01110 map00960 map01100 map01110

Pfam Domains

Protein Families

adh_short adh_short_C2

Protein Analysis

149

Amino Acids

16.39

Weight (kDa)

9.82

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019066)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018667
rosa_multiflora	Rmu_sc0002610.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121830 Rroxscaffold_2G00133220 Rroxscaffold_4G00293340 Rroxscaffold_5G00357710 Rroxscaffold_6G00403230 Rroxscaffold_7G00183320
rosa_samantha	Rh2AG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	187
AccII	CGCG	2 cut(s)	444, 446
AcsI	RAATTY	3 cut(s)	283, 350, 361
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	367
AleI	CACNNNNGTG	1 cut(s)	445
AluBI	AGCT	3 cut(s)	221, 337, 373
AluI	AGCT	3 cut(s)	221, 337, 373
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	21, 45, 268
Alw44I	GTGCAC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	1 cut(s)	88
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	107, 127
ApoI	RAATTY	3 cut(s)	283, 350, 361
AsiGI	ACCGGT	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	132, 446
AspS9I	GGNCC	2 cut(s)	89, 275
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	275
BaeGI	GKGCMC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	94, 114
BccI	CCATC	2 cut(s)	30, 431
BcoDI	GTCTC	3 cut(s)	21, 45, 268
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	2 cut(s)	108, 128
BlsI	GCNGC	2 cut(s)	109, 129
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	2 cut(s)	89, 275
BmiI	GGNNCC	1 cut(s)	76
BmsI	GCATC	3 cut(s)	128, 166, 443
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpuEI	CTTGAG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse118I	RCCGGY	1 cut(s)	68
BseGI	GGATG	3 cut(s)	57, 119, 180
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	1 cut(s)	236
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	94, 114
BsgI	GTGCAG	2 cut(s)	42, 379
Bsh1236I	CGCG	2 cut(s)	444, 446
BshFI	GGCC	1 cut(s)	90
BshTI	ACCGGT	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	3 cut(s)	21, 45, 268
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	444, 446
BspLI	GGNNCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	68
BssMI	GATC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	4 cut(s)	105, 196, 398, 432
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	57, 119, 180
BstFNI	CGCG	2 cut(s)	444, 446
BstHHI	GCGC	2 cut(s)	132, 446
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	3 cut(s)	21, 45, 268
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	2 cut(s)	444, 446
BstV1I	GCAGC	2 cut(s)	94, 114
BsuRI	GGCC	1 cut(s)	90
BtsCI	GGATG	3 cut(s)	57, 119, 180
BtsI	GCAGTG	2 cut(s)	152, 391
BtsIMutI	CAGTG	2 cut(s)	152, 391
Cac8I	GCNNGC	4 cut(s)	105, 196, 398, 432
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	2 cut(s)	132, 446
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	89, 275
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	317
CspAI	ACCGGT	1 cut(s)	68
CviJI	RGCY	8 cut(s)	90, 103, 140, 198, 221, 291, 337, 373
CviKI_1	RGCY	8 cut(s)	90, 103, 140, 198, 221, 291, 337, 373
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	45
Eco32I	GATATC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	268
FaiI	YATR	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	108, 128
FokI	GGATG	3 cut(s)	64, 106, 167
Fsp4HI	GCNGC	2 cut(s)	108, 128
FspBI	CTAG	1 cut(s)	210
FspI	TGCGCA	1 cut(s)	131
GlaI	GCGC	2 cut(s)	131, 445
GluI	GCNGC	2 cut(s)	108, 128
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	250
HhaI	GCGC	2 cut(s)	132, 446
Hin6I	GCGC	2 cut(s)	130, 444
HinP1I	GCGC	2 cut(s)	130, 444
HindIII	AAGCTT	1 cut(s)	371
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	178, 188, 319
Hpy188I	TCNGA	6 cut(s)	217, 225, 275, 344, 360, 410
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	3 cut(s)	178, 188, 319
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	59, 157, 178, 194, 396, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	206
HspAI	GCGC	2 cut(s)	130, 444
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	4 cut(s)	299, 334, 361, 425
LpnPI	CCDG	9 cut(s)	16, 82, 105, 113, 117, 137, 186, 317, 444
Lsp1109I	GCAGC	2 cut(s)	94, 114
LweI	GCATC	3 cut(s)	128, 166, 443
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	3 cut(s)	283, 350, 361
MnlI	CCTC	3 cut(s)	40, 209, 288
MslI	CAYNNNNRTG	1 cut(s)	445
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	2 cut(s)	444, 446
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	131
OliI	CACNNNNGTG	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	2 cut(s)	434, 443
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	109, 129
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	89, 275
PstNI	CAGNNNCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	1 cut(s)	445
SatI	GCNGC	2 cut(s)	108, 128
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	2 cut(s)	89, 275
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	6 cut(s)	209, 223, 280, 339, 375, 381
SfaNI	GCATC	3 cut(s)	128, 166, 443
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	283, 350, 361
SspMI	CTAG	1 cut(s)	210
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	201, 228, 437
TasI	AATT	3 cut(s)	283, 350, 361
TatI	WGTACW	1 cut(s)	316
TscAI	CASTG	2 cut(s)	159, 398
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	107, 127
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	159, 398
VneI	GTGCAC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	3 cut(s)	283, 350, 361
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.