Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0019066

Physical Location & Seq

Genomic Coordinates Forward (+)

25656391 .. 25667669

Gene Structure 11279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTAACGGTGCCATTCATGCTTCCTCGCACACTCACAGTTGTAACTCACAGCTTATGTAGAAAGGAGACATCCTTTTCTGGGGTAAAGGTTCCGACAGAACCCACAGAAAAAAAGGTGATCATTAACATCCCCAGAAGTAGCAGTTCTTTGAATTCTAACGGGAAAGAAGACAACTTCCCTGATAAGGTCAAGCACGACTCTAACCACAAAACAGAAAACCAAAACTCATTCACAAAGCAGCCCCTAGCCCGAGCTAGCCGAGCCTTCGCTGCAGCCCGCGCGCCCGTGCACTTGCAACCTTGCACAGCAGCCCCTGCTCCCCCTCCCTGCAGCCCTGCGTTCCAGCCTGCTGCCACCGAAGCATCCCTGCTGCGCAAACAAGCCAACGCACACCCACTGCATCTTTTTCCCGTTCCTGTGCATATCTGTCTTCTTGGAAGCCTTGAAACAGACAAGTACAGAATCTCATATGTTCTTATTCTTGAAGCAAGAACAGTCAGAACAATAGTTGGAGACTTCAACTGTTCCAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.69

Weight (kDa)

9.6

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019066)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018667
rosa_multiflora	Rmu_sc0002610.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121830 Rroxscaffold_2G00133220 Rroxscaffold_4G00293340 Rroxscaffold_5G00357710 Rroxscaffold_6G00403230 Rroxscaffold_7G00183320
rosa_samantha	Rh2AG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	10
AccII	CGCG	2 cut(s)	282, 284
AciI	CCGC	1 cut(s)	280
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	81, 187
AgsI	TTSAA	4 cut(s)	154, 449, 488, 523
AluBI	AGCT	2 cut(s)	54, 257
AluI	AGCT	2 cut(s)	54, 257
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	62, 510
Alw44I	GTGCAC	1 cut(s)	290
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	252
ApaLI	GTGCAC	1 cut(s)	290
ApeKI	GCWGC	7 cut(s)	241, 272, 275, 311, 333, 353, 373
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	3 cut(s)	284, 286, 378
AsuHPI	GGTGA	1 cut(s)	130
AsuNHI	GCTAGC	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	10
BbsI	GAAGAC	2 cut(s)	177, 425
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	7 cut(s)	253, 259, 287, 323, 340, 345, 360
BclI	TGATCA	1 cut(s)	120
BcoDI	GTCTC	2 cut(s)	62, 510
BfaI	CTAG	2 cut(s)	248, 258
BfmI	CTRYAG	2 cut(s)	273, 331
BisI	GCNGC	7 cut(s)	242, 273, 276, 312, 334, 354, 374
BlsI	GCNGC	7 cut(s)	243, 274, 277, 313, 335, 355, 375
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	12, 93
BmsI	GCATC	2 cut(s)	374, 412
BmtI	GCTAGC	1 cut(s)	261
BpiI	GAAGAC	2 cut(s)	177, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 187
BseGI	GGATG	3 cut(s)	71, 129, 365
BseLI	CCNNNNNNNGG	2 cut(s)	81, 187
BsePI	GCGCGC	1 cut(s)	282
BseSI	GKGCMC	1 cut(s)	294
BseXI	GCAGC	7 cut(s)	253, 259, 287, 323, 340, 345, 360
Bsh1236I	CGCG	2 cut(s)	282, 284
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	81, 187
BsmAI	GTCTC	2 cut(s)	62, 510
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	1 cut(s)	280
BspFNI	CGCG	2 cut(s)	282, 284
BspLI	GGNNCC	2 cut(s)	12, 93
BspMAI	CTGCAG	2 cut(s)	277, 335
BspOI	GCTAGC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	10
BssHII	GCGCGC	1 cut(s)	282
BssMI	GATC	1 cut(s)	120
Bst4CI	ACNGT	4 cut(s)	10, 40, 499, 527
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstC8I	GCNNGC	4 cut(s)	259, 280, 284, 351
BstF5I	GGATG	3 cut(s)	71, 129, 365
BstFNI	CGCG	2 cut(s)	282, 284
BstHHI	GCGC	3 cut(s)	284, 286, 378
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	2 cut(s)	62, 510
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 263, 272, 281, 317, 362
BstSFI	CTRYAG	2 cut(s)	273, 331
BstSLI	GKGCMC	1 cut(s)	294
BstUI	CGCG	2 cut(s)	282, 284
BstV1I	GCAGC	7 cut(s)	253, 259, 287, 323, 340, 345, 360
BstV2I	GAAGAC	2 cut(s)	177, 425
BtsCI	GGATG	3 cut(s)	71, 129, 365
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	4 cut(s)	259, 280, 284, 351
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	3 cut(s)	284, 286, 378
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	1 cut(s)	19
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	154
FaeI	CATG	1 cut(s)	22
FaiI	YATR	5 cut(s)	20, 58, 426, 472, 474
FatI	CATG	1 cut(s)	18
FauI	CCCGC	1 cut(s)	287
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	242, 273, 276, 312, 334, 354, 374
FokI	GGATG	3 cut(s)	58, 116, 352
Fsp4HI	GCNGC	7 cut(s)	242, 273, 276, 312, 334, 354, 374
FspBI	CTAG	2 cut(s)	248, 258
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	3 cut(s)	283, 285, 377
GluI	GCNGC	7 cut(s)	242, 273, 276, 312, 334, 354, 374
HhaI	GCGC	3 cut(s)	284, 286, 378
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	3 cut(s)	282, 284, 376
HinP1I	GCGC	3 cut(s)	282, 284, 376
HinfI	GANTC	2 cut(s)	200, 465
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	96, 503
Hpy188III	TCNNGA	1 cut(s)	485
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	4 cut(s)	10, 40, 499, 527
HpyCH4V	TGCA	7 cut(s)	275, 292, 298, 306, 333, 403, 424
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 263, 272, 281, 317, 362
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	3 cut(s)	282, 284, 376
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	7 cut(s)	253, 259, 287, 323, 340, 345, 360
LweI	GCATC	2 cut(s)	374, 412
MaeI	CTAG	2 cut(s)	248, 258
MaeIII	GTNAC	2 cut(s)	4, 43
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	2 cut(s)	182, 425
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	154
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	119, 493
MnlI	CCTC	2 cut(s)	36, 336
MseI	TTAA	1 cut(s)	126
MvnI	CGCG	2 cut(s)	282, 284
MwoI	GCNNNNNNNGC	6 cut(s)	19, 263, 272, 281, 317, 362
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	1 cut(s)	120
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	12, 93
NmeAIII	GCCGAG	1 cut(s)	287
NsbI	TGCGCA	1 cut(s)	377
PauI	GCGCGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	465
PkrI	GCNGC	7 cut(s)	243, 274, 277, 313, 335, 355, 375
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	12, 93
PstI	CTGCAG	2 cut(s)	277, 335
PstNI	CAGNNNCTG	1 cut(s)	317
PteI	GCGCGC	1 cut(s)	282
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	7 cut(s)	242, 273, 276, 312, 334, 354, 374
Sau3AI	GATC	1 cut(s)	120
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	6 cut(s)	56, 93, 120, 192, 259, 304
SfaNI	GCATC	2 cut(s)	374, 412
SfcI	CTRYAG	2 cut(s)	273, 331
Sse9I	AATT	1 cut(s)	154
SsiI	CCGC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	248, 258
TaaI	ACNGT	4 cut(s)	10, 40, 499, 527
TasI	AATT	1 cut(s)	154
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	405
TseI	GCWGC	7 cut(s)	241, 272, 275, 311, 333, 353, 373
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	405
VneI	GTGCAC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	154
XspI	CTAG	2 cut(s)	248, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.