Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019066

Physical Location & Seq

Genomic Coordinates Reverse (-)

37469811 .. 37485634

Gene Structure 15824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCTCTACTAAGGGATTCAATATTGAAACTGTGGAATACAGAACATCAGCTTCAGTCTGGGATGTCGGGGATCAAGACAATGTATGAAAACACTCGTGCAACCTCTGGAGCGGGTCTATATGAAGGCCTGGATTGGCTCTCCAACAACATTGCTAACAAGCCCGAGCTAGCCGAGCCTTTGCTACAGCCCGAGCGCCCGTGCGTTTGTAACCTTGCACAGCAGCCCCTGCTGCCCCCTCCCTGCAGCCCTGCGTTCCAGCCTGCTGCCACCGAAGCATCCCTGCTGCGCAGACAAGCCAACGCACACCCACTGCATCTTTTTCCCGTTCCTGTGCACATCCGTCTTCTTGCAAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko05110 ko05134 map04072 map04144 map05110 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

120

Amino Acids

13.23

Weight (kDa)

6.89

Isoelectric Point (pI)

77.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019066)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018667
rosa_multiflora	Rmu_sc0002610.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121830 Rroxscaffold_2G00133220 Rroxscaffold_4G00293340 Rroxscaffold_5G00357710 Rroxscaffold_6G00403230 Rroxscaffold_7G00183320
rosa_samantha	Rh2AG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	290
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	38
AgsI	TTSAA	2 cut(s)	21, 28
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	2 cut(s)	52, 169
AluI	AGCT	2 cut(s)	52, 169
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	2 cut(s)	164, 191
AoxI	GGCC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	335
ApeKI	GCWGC	5 cut(s)	223, 232, 246, 266, 286
AspLEI	GCGC	2 cut(s)	198, 291
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	164, 191
BaeGI	GKGCMC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	5 cut(s)	219, 235, 253, 258, 273
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	185, 244
BfoI	RGCGCY	1 cut(s)	199
BisI	GCNGC	5 cut(s)	224, 233, 247, 267, 287
BlsI	GCNGC	5 cut(s)	225, 234, 248, 268, 288
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	2 cut(s)	164, 191
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	2 cut(s)	287, 325
BmtI	GCTAGC	1 cut(s)	173
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	3 cut(s)	69, 278, 339
BseMI	GCAATG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	5 cut(s)	219, 235, 253, 258, 273
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	2 cut(s)	164, 191
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	2 cut(s)	164, 191
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	72
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	150
BssMI	GATC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	171, 264, 355
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	3 cut(s)	69, 278, 339
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	2 cut(s)	198, 291
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	72
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 229, 232, 275
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	2 cut(s)	185, 244
BstSLI	GKGCMC	1 cut(s)	339
BstV1I	GCAGC	5 cut(s)	219, 235, 253, 258, 273
BstV2I	GAAGAC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	3 cut(s)	69, 278, 339
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	171, 264, 355
CaiI	CAGNNNCTG	1 cut(s)	229
CfoI	GCGC	2 cut(s)	198, 291
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	164, 191
EcoRII	CCWGG	1 cut(s)	129
FaiI	YATR	3 cut(s)	87, 121, 123
FauI	CCCGC	1 cut(s)	106
Fnu4HI	GCNGC	5 cut(s)	224, 233, 247, 267, 287
FokI	GGATG	3 cut(s)	76, 265, 326
Fsp4HI	GCNGC	5 cut(s)	224, 233, 247, 267, 287
FspBI	CTAG	1 cut(s)	170
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	2 cut(s)	197, 290
GluI	GCNGC	5 cut(s)	224, 233, 247, 267, 287
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	198, 291
Hin6I	GCGC	2 cut(s)	196, 289
HinP1I	GCGC	2 cut(s)	196, 289
HinfI	GANTC	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	76, 108
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	101, 218, 246, 316, 337, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 229, 232, 275
HpyF3I	CTNAG	1 cut(s)	11
HspAI	GCGC	2 cut(s)	196, 289
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	5 cut(s)	219, 235, 253, 258, 273
LweI	GCATC	2 cut(s)	287, 325
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	1 cut(s)	74
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	72
MboII	GAAGA	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	2 cut(s)	115, 249
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	175, 229, 232, 275
NdeII	GATC	1 cut(s)	72
NheI	GCTAGC	1 cut(s)	169
NmeAIII	GCCGAG	1 cut(s)	199
NsbI	TGCGCA	1 cut(s)	290
PceI	AGGCCT	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	225, 234, 248, 268, 288
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PstI	CTGCAG	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	229
SatI	GCNGC	5 cut(s)	224, 233, 247, 267, 287
Sau3AI	GATC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	4 cut(s)	54, 107, 171, 216
SfaNI	GCATC	2 cut(s)	287, 325
SfcI	CTRYAG	2 cut(s)	185, 244
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	113
SspI	AATATT	1 cut(s)	24
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	5 cut(s)	223, 232, 246, 266, 286
TspDTI	ATGAA	2 cut(s)	102, 138
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	318
VneI	GTGCAC	1 cut(s)	335
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.