Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019066

Physical Location & Seq

Genomic Coordinates Reverse (-)

70327325 .. 70335473

Gene Structure 8149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGATGGTATCATTGACACTGTTTCTGCTTCTCACTCTTTCCTCCCATTGATTGGCTTGCTGAAAACTAGTGTAAAACTGGTCTTGCCGAGCCTTCGCTACAGCCCGCGCGCCCCGTGCGCTTGCAACCTTGCACAGCAGCCCCTGCTGCCCCCTCCCTGCAGCCCTGCGTTCCAGCCTGCTGCCACCGAAGCATCCCTGCTGCTCAAACAAGCCAACGCACACCCACTGCATCTTTTTTCCGTTCCTGTACACATCAGTCTTCTTGCAAGCCTCGAAACATCTAGTTCGGAAGCTCAGATCGAAAAACTTTCTTCATCAAAGTTGTTCGTCTCTCGCCGCAAGAACCAGCGGAAGAGGGTGATGCCGGCGAAGATGGTGAAGCAAAGGAGGGGTCATGAGGAGGGAGCGGAGGGCGGGGATAGGTCCGAGAGGGGGACCGGTCAACACAGCAGCGAAAAAGGGCCAGCAAGGAGGAGGTGGAGGAGGACAGAGATGGTGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

168

Amino Acids

18.42

Weight (kDa)

10.38

Isoelectric Point (pI)

79.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019066)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018667
rosa_multiflora	Rmu_sc0002610.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121830 Rroxscaffold_2G00133220 Rroxscaffold_4G00293340 Rroxscaffold_5G00357710 Rroxscaffold_6G00403230 Rroxscaffold_7G00183320
rosa_samantha	Rh2AG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccBSI	CCGCTC	1 cut(s)	410
AccII	CGCG	2 cut(s)	109, 111
AciI	CCGC	5 cut(s)	107, 340, 352, 410, 417
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	53, 435
AgeI	ACCGGT	1 cut(s)	440
AhlI	ACTAGT	1 cut(s)	68
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	6 cut(s)	139, 148, 162, 182, 202, 453
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AsiGI	ACCGGT	1 cut(s)	440
AspLEI	GCGC	3 cut(s)	111, 113, 122
AspS9I	GGNCC	3 cut(s)	426, 438, 464
AsuHPI	GGTGA	2 cut(s)	373, 391
AvaII	GGWCC	2 cut(s)	426, 438
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	6 cut(s)	135, 151, 169, 174, 189, 465
BccI	CCATC	2 cut(s)	370, 490
BcoDI	GTCTC	1 cut(s)	337
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	2 cut(s)	69, 285
BfmI	CTRYAG	2 cut(s)	100, 160
BisI	GCNGC	7 cut(s)	140, 149, 163, 183, 203, 340, 454
BlsI	GCNGC	7 cut(s)	141, 150, 164, 184, 204, 341, 455
Bme18I	GGWCC	2 cut(s)	426, 438
BmgT120I	GGNCC	3 cut(s)	426, 438, 464
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	3 cut(s)	203, 241, 354
BpiI	GAAGAC	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 435
Bse118I	RCCGGY	2 cut(s)	367, 440
Bse1I	ACTGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	10, 194
BseLI	CCNNNNNNNGG	2 cut(s)	53, 435
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	84
BsePI	GCGCGC	1 cut(s)	109
BseRI	GAGGAG	3 cut(s)	416, 490, 499
BseXI	GCAGC	6 cut(s)	135, 151, 169, 174, 189, 465
Bsh1236I	CGCG	2 cut(s)	109, 111
BshFI	GGCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	368, 441
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	53, 435
BsmAI	GTCTC	1 cut(s)	337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	1 cut(s)	466
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	5 cut(s)	107, 340, 352, 410, 417
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	109, 111
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	410
BsrFI	RCCGGY	2 cut(s)	367, 440
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	2 cut(s)	367, 440
BssHII	GCGCGC	1 cut(s)	109
BssMI	GATC	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	8 cut(s)	59, 107, 111, 124, 180, 271, 369, 468
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	10, 194
BstFNI	CGCG	2 cut(s)	109, 111
BstHHI	GCGC	3 cut(s)	111, 113, 122
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	337
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 119, 145, 148, 191
BstSFI	CTRYAG	2 cut(s)	100, 160
BstUI	CGCG	2 cut(s)	109, 111
BstV1I	GCAGC	6 cut(s)	135, 151, 169, 174, 189, 465
BstV2I	GAAGAC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	466
BtsCI	GGATG	2 cut(s)	10, 194
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	2 cut(s)	18, 227
Cac8I	GCNNGC	8 cut(s)	59, 107, 111, 124, 180, 271, 369, 468
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	397
CfoI	GCGC	3 cut(s)	111, 113, 122
Cfr10I	RCCGGY	2 cut(s)	367, 440
Cfr13I	GGNCC	3 cut(s)	426, 438, 464
Csp6I	GTAC	1 cut(s)	251
CspAI	ACCGGT	1 cut(s)	440
CviAII	CATG	1 cut(s)	398
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco47I	GGWCC	2 cut(s)	426, 438
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	1 cut(s)	401
FaiI	YATR	1 cut(s)	399
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	1 cut(s)	397
FauI	CCCGC	2 cut(s)	114, 410
Fnu4HI	GCNGC	7 cut(s)	140, 149, 163, 183, 203, 340, 454
FokI	GGATG	2 cut(s)	17, 181
Fsp4HI	GCNGC	7 cut(s)	140, 149, 163, 183, 203, 340, 454
FspBI	CTAG	2 cut(s)	69, 285
GlaI	GCGC	3 cut(s)	110, 112, 121
GluI	GCNGC	7 cut(s)	140, 149, 163, 183, 203, 340, 454
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	2 cut(s)	368, 441
HhaI	GCGC	3 cut(s)	111, 113, 122
Hin1II	CATG	1 cut(s)	401
Hin6I	GCGC	3 cut(s)	109, 111, 120
HinP1I	GCGC	3 cut(s)	109, 111, 120
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HpaII	CCGG	2 cut(s)	368, 441
HphI	GGTGA	2 cut(s)	373, 391
Hpy166II	GTNNAC	2 cut(s)	253, 446
Hpy188I	TCNGA	3 cut(s)	292, 300, 430
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	2 cut(s)	253, 446
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	126, 134, 162, 232, 269
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 119, 145, 148, 191
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	1 cut(s)	401
HspAI	GCGC	3 cut(s)	109, 111, 120
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	6 cut(s)	135, 151, 169, 174, 189, 465
LweI	GCATC	3 cut(s)	203, 241, 354
MaeI	CTAG	2 cut(s)	69, 285
MalI	GATC	1 cut(s)	302
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	1 cut(s)	300
MboII	GAAGA	4 cut(s)	254, 306, 367, 385
MroNI	GCCGGC	1 cut(s)	367
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	368, 441
MvnI	CGCG	2 cut(s)	109, 111
MwoI	GCNNNNNNNGC	5 cut(s)	117, 119, 145, 148, 191
NaeI	GCCGGC	1 cut(s)	369
NdeII	GATC	1 cut(s)	300
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	439
NmeAIII	GCCGAG	1 cut(s)	114
PagI	TCATGA	1 cut(s)	397
PauI	GCGCGC	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	369
PflMI	CCANNNNNTGG	1 cut(s)	53
PinAI	ACCGGT	1 cut(s)	440
PkrI	GCNGC	7 cut(s)	141, 150, 164, 184, 204, 341, 455
PspN4I	GGNNCC	1 cut(s)	439
PspPI	GGNCC	3 cut(s)	426, 438, 464
PstI	CTGCAG	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	145
PteI	GCGCGC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SatI	GCNGC	7 cut(s)	140, 149, 163, 183, 203, 340, 454
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	3 cut(s)	426, 438, 464
SetI	ASST	4 cut(s)	132, 298, 428, 482
SfaNI	GCATC	3 cut(s)	203, 241, 354
SfcI	CTRYAG	2 cut(s)	100, 160
SinI	GGWCC	2 cut(s)	426, 438
SpeI	ACTAGT	1 cut(s)	68
SsiI	CCGC	5 cut(s)	107, 340, 352, 410, 417
SspMI	CTAG	2 cut(s)	69, 285
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	276, 303
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	1 cut(s)	342
TscAI	CASTG	2 cut(s)	25, 234
TseI	GCWGC	6 cut(s)	139, 148, 162, 182, 202, 453
TspDTI	ATGAA	1 cut(s)	306
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	25, 234
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	2 cut(s)	426, 438
XspI	CTAG	2 cut(s)	69, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.