Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019066

Physical Location & Seq

Genomic Coordinates Forward (+)

13629193 .. 13639180

Gene Structure 9988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTTGCTACCCAAGCCAAAAGAAAATCTAGAATCCCCGAGCTAGCCGAGCCTTCGCTACAGCCCGCGCGCCCGTGCGCTTGCAACCTTGCACAGCAGCCCCTGCTGCCCCCTCCCTGCAGCCCTGCGTTCCAGCCTGCTGCCACCGAAGCATCCCTGCTGCTCAAACAAGCCAACGCACACCCACTGCATCTTTTTTCCGTTCCTGTACACATCAGTCTTCTTGCAAGCCTCGAAACGTCTAGTTCGGAAGCTCAGATCGAAAAACTTTCTTCATCAAAGTTGTTCGTCTCTGTCAAGCTTTCAAGGAAGTTGCTTCCAGAAACAAGATCTAAAACAGTTTCCTTTTTAACCCTCCCCAAAATCCCTTGGTCATATCGGAACCTAGTCAAGCCGGGAGAGTTTAGGTTGAGCGCCACGCCAATATTTAAGTTCAAAGAAAGCGCAACAAGGAGCGCAGTATCTAAACCCAATGAAGAAGTACAACAATCCTCGATAGAAACATTCCTAATAAGTAAGGTCTCCCCTCTAGCCAAATGCACTCCTCATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.19

Weight (kDa)

9.93

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019066)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018667
rosa_multiflora	Rmu_sc0002610.1_g000004
rosa_roxburghii	Rroxscaffold_2G00121830 Rroxscaffold_2G00133220 Rroxscaffold_4G00293340 Rroxscaffold_5G00357710 Rroxscaffold_6G00403230 Rroxscaffold_7G00183320
rosa_samantha	Rh2AG295200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	68, 70
AciI	CCGC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	210, 483
AgsI	TTSAA	2 cut(s)	306, 436
AluBI	AGCT	3 cut(s)	43, 254, 301
AluI	AGCT	3 cut(s)	43, 254, 301
Alw26I	GTCTC	2 cut(s)	295, 526
AlwNI	CAGNNNCTG	1 cut(s)	103
Ama87I	CYCGRG	1 cut(s)	38
ApeKI	GCWGC	5 cut(s)	97, 106, 120, 140, 160
AspLEI	GCGC	6 cut(s)	70, 72, 80, 416, 446, 458
AsuC2I	CCSGG	1 cut(s)	396
AsuNHI	GCTAGC	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	5 cut(s)	93, 109, 127, 132, 147
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	2 cut(s)	295, 526
BfaI	CTAG	5 cut(s)	30, 44, 243, 386, 530
BfmI	CTRYAG	2 cut(s)	59, 118
BfoI	RGCGCY	1 cut(s)	417
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	5 cut(s)	98, 107, 121, 141, 161
BlsI	GCNGC	5 cut(s)	99, 108, 122, 142, 162
Bme1390I	CCNGG	1 cut(s)	396
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	2 cut(s)	161, 199
BmtI	GCTAGC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	368
BseGI	GGATG	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	269
BsePI	GCGCGC	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	5 cut(s)	93, 109, 127, 132, 147
Bsh1236I	CGCG	2 cut(s)	68, 70
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	295, 526
BsmBI	CGTCTC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	526
BsoBI	CYCGRG	1 cut(s)	38
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	258, 329
BspACI	CCGC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	2 cut(s)	68, 70
BspLI	GGNNCC	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	122
BspOI	GCTAGC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	526
BsrGI	TGTACA	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	368
BssHII	GCGCGC	1 cut(s)	68
BssMI	GATC	2 cut(s)	258, 329
BssT1I	CCWWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	340
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	208
BstC8I	GCNNGC	7 cut(s)	6, 45, 66, 70, 82, 138, 229
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	152
BstFNI	CGCG	2 cut(s)	68, 70
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	6 cut(s)	70, 72, 80, 416, 446, 458
BstKTI	GATC	2 cut(s)	261, 332
BstMAI	GTCTC	2 cut(s)	295, 526
BstMBI	GATC	2 cut(s)	258, 329
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 49, 103, 106, 149
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	59, 118
BstUI	CGCG	2 cut(s)	68, 70
BstV1I	GCAGC	5 cut(s)	93, 109, 127, 132, 147
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	152
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	7 cut(s)	6, 45, 66, 70, 82, 138, 229
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	6 cut(s)	70, 72, 80, 416, 446, 458
Csp6I	GTAC	2 cut(s)	209, 482
CviQI	GTAC	2 cut(s)	209, 482
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	260, 331
DpnII	GATC	2 cut(s)	258, 329
Eco130I	CCWWGG	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	526
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	368
Esp3I	CGTCTC	1 cut(s)	295
FaiI	YATR	1 cut(s)	376
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	5 cut(s)	98, 107, 121, 141, 161
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	5 cut(s)	98, 107, 121, 141, 161
FspBI	CTAG	5 cut(s)	30, 44, 243, 386, 530
GlaI	GCGC	6 cut(s)	69, 71, 79, 415, 445, 457
GluI	GCNGC	5 cut(s)	98, 107, 121, 141, 161
HaeII	RGCGCY	1 cut(s)	417
HapII	CCGG	1 cut(s)	395
HhaI	GCGC	6 cut(s)	70, 72, 80, 416, 446, 458
Hin6I	GCGC	6 cut(s)	68, 70, 78, 414, 444, 456
HinP1I	GCGC	6 cut(s)	68, 70, 78, 414, 444, 456
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	250, 258, 381
Hpy188III	TCNNGA	2 cut(s)	30, 320
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	6 cut(s)	84, 92, 120, 190, 227, 540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 49, 103, 106, 149
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	239
HspAI	GCGC	6 cut(s)	68, 70, 78, 414, 444, 456
Kzo9I	GATC	2 cut(s)	258, 329
LmnI	GCTCC	1 cut(s)	453
LpnPI	CCDG	9 cut(s)	116, 130, 138, 146, 150, 170, 219, 333, 408
Lsp1109I	GCAGC	5 cut(s)	93, 109, 127, 132, 147
LweI	GCATC	2 cut(s)	161, 199
MaeI	CTAG	5 cut(s)	30, 44, 243, 386, 530
MaeII	ACGT	1 cut(s)	239
MalI	GATC	2 cut(s)	260, 331
MboI	GATC	2 cut(s)	258, 329
MboII	GAAGA	3 cut(s)	212, 264, 488
MflI	RGATCY	1 cut(s)	329
MnlI	CCTC	6 cut(s)	123, 242, 365, 502, 537, 555
MseI	TTAA	2 cut(s)	350, 429
MspI	CCGG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	396
MvnI	CGCG	2 cut(s)	68, 70
MwoI	GCNNNNNNNGC	5 cut(s)	14, 49, 103, 106, 149
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	2 cut(s)	258, 329
NheI	GCTAGC	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	73
PauI	GCGCGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	33
PkrI	GCNGC	5 cut(s)	99, 108, 122, 142, 162
PspN4I	GGNNCC	1 cut(s)	383
PstI	CTGCAG	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	103
PsuI	RGATCY	1 cut(s)	329
PteI	GCGCGC	1 cut(s)	68
RsaI	GTAC	2 cut(s)	210, 483
RsaNI	GTAC	2 cut(s)	209, 482
SaqAI	TTAA	2 cut(s)	350, 429
SatI	GCNGC	5 cut(s)	98, 107, 121, 141, 161
Sau3AI	GATC	2 cut(s)	258, 329
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	8 cut(s)	45, 90, 242, 256, 303, 387, 410, 522
SfaNI	GCATC	2 cut(s)	161, 199
SfcI	CTRYAG	2 cut(s)	59, 118
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	5 cut(s)	30, 44, 243, 386, 530
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	368
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	234, 261, 494
TatI	WGTACW	2 cut(s)	208, 481
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	2 cut(s)	350, 429
Tru9I	TTAA	2 cut(s)	350, 429
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	5 cut(s)	97, 106, 120, 140, 160
TspDTI	ATGAA	2 cut(s)	264, 489
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	192
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	5 cut(s)	30, 44, 243, 386, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.