Rroxscaffold_7G00183320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0019066
Physical Location & Seq
Forward (+)
22402048 .. 22414138
12091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183320.1

Sequence Viewer

Length: 423 bp
ATGAGGTCCTATGATCCATTCTTGTTGACTGCCCAATTTCAGGGTCATTACAGTCAAGGCTTGACATTGGCCACGGAGGAAAAGAGTTCAGTTACACAGCCCGAGCTAGCCGAGCCTTCGCTACAGCCCGAGCGCCCGTGCGTTTGTAACCTTGCACAGCAGCCCCTGCTGCCCCCTCCCTGCAGCCCTGCGTTCCAGCCTGCTGCCACCGAAGCATCCCTGCTGCGCAGACAAGCCAACGCACACCCACTGCATCTTTTTCCCGTTCCTGTGCACATCCGTCTTATTGAAAGCCTCGAAACGTCTAGTTCGGAAGCTCAGATCGAAAAACTTTCTTCATCAAAGTTGTTCGTCTCTGCCAAAGATGAACTGGTCAGTCTTGGAATGGATGGGAGCACTATATCTACATGGTCTCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

15.24

Weight (kDa)

5.26

Isoelectric Point (pI)

77.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 227
AclWI GGATC 1 cut(s) 8
AcoI YGGCCR 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 290
AluBI AGCT 2 cut(s) 106, 317
AluI AGCT 2 cut(s) 106, 317
Alw21I GWGCWC 2 cut(s) 276, 398
Alw26I GTCTC 2 cut(s) 358, 417
Alw44I GTGCAC 1 cut(s) 272
AlwI GGATC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 166
Ama87I CYCGRG 2 cut(s) 101, 128
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 272
ApeKI GCWGC 5 cut(s) 160, 169, 183, 203, 223
AspLEI GCGC 2 cut(s) 135, 228
AspS9I GGNCC 1 cut(s) 6
AsuNHI GCTAGC 1 cut(s) 106
AvaI CYCGRG 2 cut(s) 101, 128
AvaII GGWCC 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 276
BalI TGGCCA 1 cut(s) 71
Bbv12I GWGCWC 2 cut(s) 276, 398
BbvI GCAGC 5 cut(s) 156, 172, 190, 195, 210
BccI CCATC 1 cut(s) 383
BcoDI GTCTC 2 cut(s) 358, 417
BfaI CTAG 2 cut(s) 107, 306
BfmI CTRYAG 2 cut(s) 122, 181
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 5 cut(s) 161, 170, 184, 204, 224
BlsI GCNGC 5 cut(s) 162, 171, 185, 205, 225
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 2 cut(s) 101, 128
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 224, 262
BmtI GCTAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 3 cut(s) 215, 276, 394
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 375
BseSI GKGCMC 1 cut(s) 276
BseXI GCAGC 5 cut(s) 156, 172, 190, 195, 210
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 276, 398
BsiHKCI CYCGRG 2 cut(s) 101, 128
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 358, 417
BsmBI CGTCTC 1 cut(s) 358
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 101, 128
Bsp1286I GDGCHC 2 cut(s) 276, 398
Bsp143I GATC 2 cut(s) 13, 321
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 185
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 13, 321
Bst4CI ACNGT 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 108, 201
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 3 cut(s) 215, 276, 394
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 135, 228
BstKTI GATC 2 cut(s) 16, 324
BstMAI GTCTC 2 cut(s) 358, 417
BstMBI GATC 2 cut(s) 13, 321
BstMWI GCNNNNNNNGC 4 cut(s) 112, 166, 169, 212
BstSFI CTRYAG 2 cut(s) 122, 181
BstSLI GKGCMC 1 cut(s) 276
BstV1I GCAGC 5 cut(s) 156, 172, 190, 195, 210
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 215, 276, 394
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 108, 201
CaiI CAGNNNCTG 1 cut(s) 166
CfoI GCGC 2 cut(s) 135, 228
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 408
DdeI CTNAG 1 cut(s) 318
DpnI GATC 2 cut(s) 15, 323
DpnII GATC 2 cut(s) 13, 321
EaeI YGGCCR 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 6
Eco88I CYCGRG 2 cut(s) 101, 128
EcoO109I RGGNCCY 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 358
FaeI CATG 1 cut(s) 411
FaiI YATR 3 cut(s) 12, 401, 409
FatI CATG 1 cut(s) 407
Fnu4HI GCNGC 5 cut(s) 161, 170, 184, 204, 224
FokI GGATG 3 cut(s) 202, 263, 401
Fsp4HI GCNGC 5 cut(s) 161, 170, 184, 204, 224
FspBI CTAG 2 cut(s) 107, 306
FspI TGCGCA 1 cut(s) 227
GlaI GCGC 2 cut(s) 134, 227
GluI GCNGC 5 cut(s) 161, 170, 184, 204, 224
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 71
HhaI GCGC 2 cut(s) 135, 228
Hin1II CATG 1 cut(s) 411
Hin6I GCGC 2 cut(s) 133, 226
HinP1I GCGC 2 cut(s) 133, 226
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
Hpy166II GTNNAC 2 cut(s) 27, 274
Hpy188I TCNGA 2 cut(s) 313, 321
Hpy8I GTNNAC 2 cut(s) 27, 274
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 4 cut(s) 155, 183, 253, 274
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 166, 169, 212
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 1 cut(s) 411
HspAI GCGC 2 cut(s) 133, 226
Kzo9I GATC 2 cut(s) 13, 321
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 9 cut(s) 26, 179, 193, 201, 209, 213, 233, 282, 356
Lsp1109I GCAGC 5 cut(s) 156, 172, 190, 195, 210
LweI GCATC 2 cut(s) 224, 262
MaeI CTAG 2 cut(s) 107, 306
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 2 cut(s) 91, 146
MalI GATC 2 cut(s) 15, 323
MboI GATC 2 cut(s) 13, 321
MboII GAAGA 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 276, 398
MlsI TGGCCA 1 cut(s) 71
MluCI AATT 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 71
MnlI CCTC 3 cut(s) 70, 186, 305
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 112, 166, 169, 212
NdeII GATC 2 cut(s) 13, 321
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 411
NmeAIII GCCGAG 1 cut(s) 136
NsbI TGCGCA 1 cut(s) 227
PkrI GCNGC 5 cut(s) 162, 171, 185, 205, 225
PpuMI RGGWCCY 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 6
PspPI GGNCC 1 cut(s) 6
PspPPI RGGWCCY 1 cut(s) 6
PstI CTGCAG 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 166
SatI GCNGC 5 cut(s) 161, 170, 184, 204, 224
Sau3AI GATC 2 cut(s) 13, 321
Sau96I GGNCC 1 cut(s) 6
SduI GDGCHC 2 cut(s) 276, 398
SetI ASST 5 cut(s) 8, 108, 153, 305, 319
SfaNI GCATC 2 cut(s) 224, 262
SfcI CTRYAG 2 cut(s) 122, 181
SinI GGWCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 1 cut(s) 35
SspMI CTAG 2 cut(s) 107, 306
TaaI ACNGT 1 cut(s) 53
TaiI ACGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 297, 324
TasI AATT 1 cut(s) 35
TscAI CASTG 1 cut(s) 255
TseI GCWGC 5 cut(s) 160, 169, 183, 203, 223
TspDTI ATGAA 2 cut(s) 327, 381
TspGWI ACGGA 2 cut(s) 89, 269
TspRI CASTG 1 cut(s) 255
VneI GTGCAC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 6
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XspI CTAG 2 cut(s) 107, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.