Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002621.1

Orthogroup ID

OG0018989

Physical Location & Seq

Genomic Coordinates Reverse (-)

58380 .. 60454

Gene Structure 2075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002621.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggcgtttggatcaaacgacgtgtcagtggatagggaggtgaggaggaggatgattgaggtggcaagtgtgggggatgcacctgatggtgaaggtggggaagaggggcttctgatagaattgcagatcgatgctttgcagattttggatattatgaagaaaagagattttgttggtggaaatgtctataggattattatcaatggatacctaagaaaaaatgatgtttgtagagcacttgatatgtttcttagtttgaaagaatgtggatatttgcctactacttctacctacaacgagctgatgcagcacctcttcaatgtatctgaagcatcgaaagtatttgatgatatgaaggacaaaagcattaagcccactttaaagtcatatttagtatttatcaaggagctttgtagaatttcaaggacagataagagtctcaaggtcttggttcacatgcgggcatctgatatgcgcattaaagatgacttattgggttgtacttcatatggagcaaaagggagagctagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

8.3

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018989)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450911
rosa_multiflora	Rmu_sc0002621.1_g000011 Rmu_sc0002899.1_g000003
rosa_roxburghii	Rroxscaffold_3G00224570
rosa_samantha	Rh1AG112200 Rh1DG117600 Rh3BG033200 Rh3BG134300 Rh3DG033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	476
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	3 cut(s)	259, 319, 423
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	3 cut(s)	301, 409, 527
AluI	AGCT	3 cut(s)	301, 409, 527
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	417
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	1 cut(s)	477
AsuHPI	GGTGA	2 cut(s)	52, 101
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	443
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	187
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	22
BmsI	GCATC	5 cut(s)	67, 121, 294, 341, 473
BpuEI	CTTGAG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	2 cut(s)	57, 82
BseJI	GATNNNNATC	1 cut(s)	197
BseRI	GAGGAG	2 cut(s)	58, 61
BseXI	GCAGC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	2 cut(s)	11, 126
BspACI	CCGC	1 cut(s)	460
BspDI	ATCGAT	1 cut(s)	129
BspPI	GGATC	1 cut(s)	19
BssMI	GATC	2 cut(s)	11, 126
Bst6I	CTCTTC	2 cut(s)	96, 320
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	2 cut(s)	212, 251
BstF5I	GGATG	2 cut(s)	57, 82
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	2 cut(s)	14, 129
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	11, 126
BstMWI	GCNNNNNNNGC	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	460
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	319
Bsu15I	ATCGAT	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	57, 82
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	462
CfoI	GCGC	1 cut(s)	477
ClaI	ATCGAT	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	501
CviAII	CATG	1 cut(s)	457
CviJI	RGCY	5 cut(s)	109, 301, 373, 409, 527
CviKI_1	RGCY	5 cut(s)	109, 301, 373, 409, 527
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	2 cut(s)	212, 251
DpnI	GATC	2 cut(s)	13, 128
DpnII	GATC	2 cut(s)	11, 126
DraI	TTTAAA	1 cut(s)	381
Eam1104I	CTCTTC	2 cut(s)	96, 320
EarI	CTCTTC	2 cut(s)	96, 320
Eco57I	CTGAAG	1 cut(s)	348
FaeI	CATG	1 cut(s)	460
FaiI	YATR	9 cut(s)	155, 189, 245, 353, 388, 458, 473, 508, 510
FalI	AAGNNNNNCTT	2 cut(s)	93, 125
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	453
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	2 cut(s)	64, 89
Fsp4HI	GCNGC	1 cut(s)	308
FspAI	RTGCGCAY	1 cut(s)	476
FspBI	CTAG	1 cut(s)	528
FspI	TGCGCA	1 cut(s)	476
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	436
HphI	GGTGA	2 cut(s)	52, 101
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	3 cut(s)	114, 328, 469
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	86, 349
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	80, 124, 139, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	307
HpyF3I	CTNAG	2 cut(s)	212, 251
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	11, 126
LmnI	GCTCC	2 cut(s)	406, 512
LpnPI	CCDG	1 cut(s)	96
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	5 cut(s)	67, 121, 294, 341, 473
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	21
MalI	GATC	2 cut(s)	13, 128
MboI	GATC	2 cut(s)	11, 126
MboII	GAAGA	3 cut(s)	113, 169, 307
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	119, 417
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	7 cut(s)	31, 36, 39, 42, 52, 97, 323
MseI	TTAA	3 cut(s)	369, 380, 480
MwoI	GCNNNNNNNGC	1 cut(s)	307
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	11, 126
NlaIII	CATG	1 cut(s)	460
NsbI	TGCGCA	1 cut(s)	476
NspI	RCATGY	1 cut(s)	460
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	369, 380, 480
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	11, 126
SchI	GAGTC	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	5 cut(s)	67, 121, 294, 341, 473
SfcI	CTRYAG	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	2 cut(s)	119, 417
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	1 cut(s)	528
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	2 cut(s)	129, 335
TasI	AATT	2 cut(s)	119, 417
TatI	WGTACW	1 cut(s)	500
Tru1I	TTAA	3 cut(s)	369, 380, 480
Tru9I	TTAA	3 cut(s)	369, 380, 480
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	170, 368, 495
TspRI	CASTG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	417
XceI	RCATGY	1 cut(s)	460
XspI	CTAG	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.