pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0450911 |
| rosa_multiflora | Rmu_sc0002621.1_g000011 Rmu_sc0002899.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00224570 |
| rosa_samantha | Rh1AG112200 Rh1DG117600 Rh3BG033200 Rh3BG134300 Rh3DG033000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 184 |
| AluBI | AGCT | 5 cut(s) | 68, 88, 178, 278, 310 |
| AluI | AGCT | 5 cut(s) | 68, 88, 178, 278, 310 |
| Alw26I | GTCTC | 1 cut(s) | 256 |
| ApeKI | GCWGC | 5 cut(s) | 172, 175, 269, 278, 296 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 78 |
| AsuC2I | CCSGG | 1 cut(s) | 117 |
| BbvI | GCAGC | 5 cut(s) | 184, 187, 265, 281, 308 |
| BccI | CCATC | 1 cut(s) | 296 |
| BcnI | CCSGG | 1 cut(s) | 117 |
| BcoDI | GTCTC | 1 cut(s) | 256 |
| BisI | GCNGC | 5 cut(s) | 173, 176, 270, 279, 297 |
| BlsI | GCNGC | 5 cut(s) | 174, 177, 271, 280, 298 |
| Bme1390I | CCNGG | 1 cut(s) | 117 |
| BmrFI | CCNGG | 1 cut(s) | 117 |
| BmsI | GCATC | 2 cut(s) | 217, 239 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| BpuMI | CCSGG | 1 cut(s) | 117 |
| Bsa29I | ATCGAT | 1 cut(s) | 225 |
| BseCI | ATCGAT | 1 cut(s) | 225 |
| BseGI | GGATG | 1 cut(s) | 284 |
| BseXI | GCAGC | 5 cut(s) | 184, 187, 265, 281, 308 |
| BsgI | GTGCAG | 1 cut(s) | 315 |
| BshVI | ATCGAT | 1 cut(s) | 225 |
| BsiSI | CCGG | 1 cut(s) | 117 |
| BsmAI | GTCTC | 1 cut(s) | 256 |
| BspDI | ATCGAT | 1 cut(s) | 225 |
| BspQI | GCTCTTC | 1 cut(s) | 185 |
| Bst6I | CTCTTC | 2 cut(s) | 185, 265 |
| BstC8I | GCNNGC | 1 cut(s) | 86 |
| BstF5I | GGATG | 1 cut(s) | 284 |
| BstMAI | GTCTC | 1 cut(s) | 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 278 |
| BstSCI | CCNGG | 1 cut(s) | 115 |
| BstV1I | GCAGC | 5 cut(s) | 184, 187, 265, 281, 308 |
| Bsu15I | ATCGAT | 1 cut(s) | 225 |
| BsuTUI | ATCGAT | 1 cut(s) | 225 |
| BtsCI | GGATG | 1 cut(s) | 284 |
| BtsIMutI | CAGTG | 1 cut(s) | 298 |
| Cac8I | GCNNGC | 1 cut(s) | 86 |
| ClaI | ATCGAT | 1 cut(s) | 225 |
| CseI | GACGC | 1 cut(s) | 178 |
| CviJI | RGCY | 9 cut(s) | 25, 68, 88, 178, 207, 245, 272, 278, 310 |
| CviKI_1 | RGCY | 9 cut(s) | 25, 68, 88, 178, 207, 245, 272, 278, 310 |
| Eam1104I | CTCTTC | 2 cut(s) | 185, 265 |
| EarI | CTCTTC | 2 cut(s) | 185, 265 |
| Eco32I | GATATC | 2 cut(s) | 223, 305 |
| EcoRV | GATATC | 2 cut(s) | 223, 305 |
| EcoT22I | ATGCAT | 1 cut(s) | 232 |
| FaiI | YATR | 5 cut(s) | 78, 107, 122, 219, 275 |
| Fnu4HI | GCNGC | 5 cut(s) | 173, 176, 270, 279, 297 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 5 cut(s) | 173, 176, 270, 279, 297 |
| GluI | GCNGC | 5 cut(s) | 173, 176, 270, 279, 297 |
| HapII | CCGG | 1 cut(s) | 117 |
| HgaI | GACGC | 1 cut(s) | 178 |
| HindIII | AAGCTT | 1 cut(s) | 66 |
| HinfI | GANTC | 2 cut(s) | 57, 128 |
| HpaII | CCGG | 1 cut(s) | 117 |
| Hpy188I | TCNGA | 2 cut(s) | 62, 235 |
| Hpy188III | TCNNGA | 3 cut(s) | 91, 132, 264 |
| HpyCH4V | TGCA | 2 cut(s) | 230, 296 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 278 |
| LguI | GCTCTTC | 1 cut(s) | 185 |
| LmnI | GCTCC | 1 cut(s) | 315 |
| LpnPI | CCDG | 4 cut(s) | 117, 130, 227, 277 |
| Lsp1109I | GCAGC | 5 cut(s) | 184, 187, 265, 281, 308 |
| LweI | GCATC | 2 cut(s) | 217, 239 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MboII | GAAGA | 3 cut(s) | 104, 172, 252 |
| MnlI | CCTC | 3 cut(s) | 11, 28, 94 |
| Mph1103I | ATGCAT | 1 cut(s) | 232 |
| MroXI | GAANNNNTTC | 1 cut(s) | 78 |
| MspI | CCGG | 1 cut(s) | 117 |
| MspR9I | CCNGG | 1 cut(s) | 117 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 278 |
| NciI | CCSGG | 1 cut(s) | 117 |
| NmuCI | GTSAC | 1 cut(s) | 209 |
| NsiI | ATGCAT | 1 cut(s) | 232 |
| PciSI | GCTCTTC | 1 cut(s) | 185 |
| PdmI | GAANNNNTTC | 1 cut(s) | 78 |
| PfeI | GAWTC | 2 cut(s) | 57, 128 |
| PkrI | GCNGC | 5 cut(s) | 174, 177, 271, 280, 298 |
| SapI | GCTCTTC | 1 cut(s) | 185 |
| SatI | GCNGC | 5 cut(s) | 173, 176, 270, 279, 297 |
| ScrFI | CCNGG | 1 cut(s) | 117 |
| SetI | ASST | 9 cut(s) | 22, 70, 90, 105, 158, 180, 216, 280, 312 |
| SfaNI | GCATC | 2 cut(s) | 217, 239 |
| SgeI | CNNG | 8 cut(s) | 97, 103, 128, 129, 144, 226, 276, 312 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| StyD4I | CCNGG | 1 cut(s) | 115 |
| TaqI | TCGA | 1 cut(s) | 225 |
| TfiI | GAWTC | 2 cut(s) | 57, 128 |
| TscAI | CASTG | 1 cut(s) | 298 |
| TseFI | GTSAC | 1 cut(s) | 209 |
| TseI | GCWGC | 5 cut(s) | 172, 175, 269, 278, 296 |
| Tsp45I | GTSAC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 2 cut(s) | 137, 273 |
| TspRI | CASTG | 1 cut(s) | 298 |
| XmnI | GAANNNNTTC | 1 cut(s) | 78 |
| Zsp2I | ATGCAT | 1 cut(s) | 232 |