Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002899.1

Orthogroup ID

OG0018989

Physical Location & Seq

Genomic Coordinates Reverse (-)

9978 .. 11826

Gene Structure 1849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002899.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggcgtttggatcaaacgacgtgccggtggatagggaggtgaggaggaggatgattgaggtggcaagtgtgggggacgcacctgatggtgaaggtggggaagaggggctgatagaattgcagatcgatgttttgcagattttggatattatgaaaaaaagagattttgttggtggaaatgtctatgggattatcatcaatggatacctaagaaaaaatgatgtttgtagagcacttgatatgtttcttagtttgaaagaatgtggatatttgcctactacttctacctacaacgagctgatgcagcaccttttcaatgtatctgaagcatggaaagtatttgatgatatgaaggacaaaagcattaagcccactttaaagtcatatttagtatttatcaaggcgctttgtagaatttcaaggacagataagagtctcaagggcttggttcacatgcgggcatctgatatgcgcattaaagatgacttattgggttgtacttcatatggagcaaaagggagagctagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.83

Weight (kDa)

8.3

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018989)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450911
rosa_multiflora	Rmu_sc0002621.1_g000011 Rmu_sc0002899.1_g000003
rosa_roxburghii	Rroxscaffold_3G00224570
rosa_samantha	Rh1AG112200 Rh1DG117600 Rh3BG033200 Rh3BG134300 Rh3DG033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	473
AciI	CCGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	256, 316, 420
AjiI	CACGTC	1 cut(s)	22
AluBI	AGCT	2 cut(s)	298, 524
AluI	AGCT	2 cut(s)	298, 524
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	2 cut(s)	406, 474
AsuHPI	GGTGA	2 cut(s)	52, 101
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	197
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	407
BfuI	GTATCC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
BmgBI	CACGTC	1 cut(s)	22
BmsI	GCATC	2 cut(s)	291, 470
BpuEI	CTTGAG	1 cut(s)	422
Bsa29I	ATCGAT	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	126
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	58, 61
BseXI	GCAGC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	11, 123
BspACI	CCGC	1 cut(s)	457
BspDI	ATCGAT	1 cut(s)	126
BspPI	GGATC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	2 cut(s)	11, 123
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	209, 248
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	406, 474
BstKTI	GATC	2 cut(s)	14, 126
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	11, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNSI	RCATGY	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	197
BsuTUI	ATCGAT	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	2 cut(s)	406, 474
Cfr10I	RCCGGY	1 cut(s)	25
ClaI	ATCGAT	1 cut(s)	126
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	498
CviAII	CATG	2 cut(s)	330, 454
CviJI	RGCY	5 cut(s)	109, 298, 370, 444, 524
CviKI_1	RGCY	5 cut(s)	109, 298, 370, 444, 524
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	2 cut(s)	209, 248
DpnI	GATC	2 cut(s)	13, 125
DpnII	GATC	2 cut(s)	11, 123
DraI	TTTAAA	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco57I	CTGAAG	1 cut(s)	345
FaeI	CATG	2 cut(s)	333, 457
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	329, 453
FauI	CCCGC	1 cut(s)	450
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	305
FspAI	RTGCGCAY	1 cut(s)	473
FspBI	CTAG	1 cut(s)	525
FspI	TGCGCA	1 cut(s)	473
GlaI	GCGC	2 cut(s)	405, 473
GluI	GCNGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	407
HapII	CCGG	1 cut(s)	26
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	406, 474
Hin1II	CATG	2 cut(s)	333, 457
Hin6I	GCGC	2 cut(s)	404, 472
HinP1I	GCGC	2 cut(s)	404, 472
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	2 cut(s)	52, 101
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	325, 466
Hpy8I	GTNNAC	1 cut(s)	451
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	86, 346
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	121, 136, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	2 cut(s)	209, 248
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	333, 457
HspAI	GCGC	2 cut(s)	404, 472
Kzo9I	GATC	2 cut(s)	11, 123
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	2 cut(s)	39, 96
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	291, 470
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	1 cut(s)	21
MalI	GATC	2 cut(s)	13, 125
MboI	GATC	2 cut(s)	11, 123
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	116, 414
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	6 cut(s)	31, 36, 39, 42, 52, 97
MseI	TTAA	3 cut(s)	366, 377, 477
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	304
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	2 cut(s)	11, 123
NlaIII	CATG	2 cut(s)	333, 457
NsbI	TGCGCA	1 cut(s)	473
NspI	RCATGY	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	366, 377, 477
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	2 cut(s)	11, 123
SchI	GAGTC	1 cut(s)	442
SduI	GDGCHC	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	291, 470
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	116, 414
SsiI	CCGC	1 cut(s)	457
SspMI	CTAG	1 cut(s)	525
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	116, 414
TatI	WGTACW	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	366, 377, 477
Tru9I	TTAA	3 cut(s)	366, 377, 477
TseI	GCWGC	1 cut(s)	304
TspDTI	ATGAA	3 cut(s)	167, 365, 492
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.