pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0450911 |
| rosa_multiflora | Rmu_sc0002621.1_g000011 Rmu_sc0002899.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00224570 |
| rosa_samantha | Rh1AG112200 Rh1DG117600 Rh3BG033200 Rh3BG134300 Rh3DG033000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 157 |
| AgsI | TTSAA | 1 cut(s) | 97 |
| AluBI | AGCT | 3 cut(s) | 91, 266, 298 |
| AluI | AGCT | 3 cut(s) | 91, 266, 298 |
| Alw26I | GTCTC | 1 cut(s) | 244 |
| ApeKI | GCWGC | 5 cut(s) | 85, 88, 257, 266, 284 |
| BbvI | GCAGC | 5 cut(s) | 97, 100, 253, 269, 296 |
| BccI | CCATC | 1 cut(s) | 284 |
| BcoDI | GTCTC | 1 cut(s) | 244 |
| BfaI | CTAG | 1 cut(s) | 11 |
| BisI | GCNGC | 5 cut(s) | 86, 89, 258, 267, 285 |
| BlsI | GCNGC | 5 cut(s) | 87, 90, 259, 268, 286 |
| BmcAI | AGTACT | 1 cut(s) | 157 |
| BmsI | GCATC | 2 cut(s) | 205, 227 |
| Bsa29I | ATCGAT | 1 cut(s) | 213 |
| BseCI | ATCGAT | 1 cut(s) | 213 |
| BseGI | GGATG | 1 cut(s) | 272 |
| BseXI | GCAGC | 5 cut(s) | 97, 100, 253, 269, 296 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| BshVI | ATCGAT | 1 cut(s) | 213 |
| BsmAI | GTCTC | 1 cut(s) | 244 |
| BspDI | ATCGAT | 1 cut(s) | 213 |
| BspQI | GCTCTTC | 1 cut(s) | 98 |
| Bst6I | CTCTTC | 2 cut(s) | 98, 253 |
| BstF5I | GGATG | 1 cut(s) | 272 |
| BstMAI | GTCTC | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 263, 266 |
| BstV1I | GCAGC | 5 cut(s) | 97, 100, 253, 269, 296 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 204 |
| Bsu15I | ATCGAT | 1 cut(s) | 213 |
| BsuTUI | ATCGAT | 1 cut(s) | 213 |
| BtsCI | GGATG | 1 cut(s) | 272 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| ClaI | ATCGAT | 1 cut(s) | 213 |
| CseI | GACGC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CviJI | RGCY | 6 cut(s) | 91, 120, 233, 260, 266, 298 |
| CviKI_1 | RGCY | 6 cut(s) | 91, 120, 233, 260, 266, 298 |
| CviQI | GTAC | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 2 cut(s) | 98, 253 |
| EarI | CTCTTC | 2 cut(s) | 98, 253 |
| Eco32I | GATATC | 2 cut(s) | 211, 293 |
| EcoRV | GATATC | 2 cut(s) | 211, 293 |
| EcoT22I | ATGCAT | 1 cut(s) | 220 |
| FaiI | YATR | 6 cut(s) | 22, 30, 35, 190, 202, 263 |
| Fnu4HI | GCNGC | 5 cut(s) | 86, 89, 258, 267, 285 |
| FokI | GGATG | 1 cut(s) | 259 |
| Fsp4HI | GCNGC | 5 cut(s) | 86, 89, 258, 267, 285 |
| FspBI | CTAG | 1 cut(s) | 11 |
| GluI | GCNGC | 5 cut(s) | 86, 89, 258, 267, 285 |
| HgaI | GACGC | 1 cut(s) | 91 |
| HinfI | GANTC | 1 cut(s) | 41 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 3 cut(s) | 11, 45, 252 |
| HpyCH4V | TGCA | 3 cut(s) | 145, 218, 284 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 263, 266 |
| LguI | GCTCTTC | 1 cut(s) | 98 |
| LmnI | GCTCC | 1 cut(s) | 303 |
| LpnPI | CCDG | 2 cut(s) | 30, 265 |
| Lsp1109I | GCAGC | 5 cut(s) | 97, 100, 253, 269, 296 |
| LweI | GCATC | 2 cut(s) | 205, 227 |
| MaeI | CTAG | 1 cut(s) | 11 |
| MaeIII | GTNAC | 1 cut(s) | 122 |
| MboII | GAAGA | 2 cut(s) | 85, 240 |
| MluCI | AATT | 2 cut(s) | 165, 178 |
| Mph1103I | ATGCAT | 1 cut(s) | 220 |
| MseI | TTAA | 1 cut(s) | 168 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 263, 266 |
| NmuCI | GTSAC | 1 cut(s) | 122 |
| NsiI | ATGCAT | 1 cut(s) | 220 |
| PciSI | GCTCTTC | 1 cut(s) | 98 |
| PfeI | GAWTC | 1 cut(s) | 41 |
| PkrI | GCNGC | 5 cut(s) | 87, 90, 259, 268, 286 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| SapI | GCTCTTC | 1 cut(s) | 98 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 5 cut(s) | 86, 89, 258, 267, 285 |
| ScaI | AGTACT | 1 cut(s) | 157 |
| SetI | ASST | 5 cut(s) | 71, 93, 129, 268, 300 |
| SfaNI | GCATC | 2 cut(s) | 205, 227 |
| SgeI | CNNG | 5 cut(s) | 23, 57, 140, 264, 300 |
| Sse9I | AATT | 2 cut(s) | 165, 178 |
| SspMI | CTAG | 1 cut(s) | 11 |
| TaqI | TCGA | 1 cut(s) | 213 |
| TasI | AATT | 2 cut(s) | 165, 178 |
| TatI | WGTACW | 1 cut(s) | 155 |
| TfiI | GAWTC | 1 cut(s) | 41 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TseFI | GTSAC | 1 cut(s) | 122 |
| TseI | GCWGC | 5 cut(s) | 85, 88, 257, 266, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 122 |
| TspDTI | ATGAA | 2 cut(s) | 50, 261 |
| TspRI | CASTG | 1 cut(s) | 286 |
| XbaI | TCTAGA | 1 cut(s) | 10 |
| XspI | CTAG | 1 cut(s) | 11 |
| ZrmI | AGTACT | 1 cut(s) | 157 |
| Zsp2I | ATGCAT | 1 cut(s) | 220 |