pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0450911 |
| rosa_multiflora | Rmu_sc0002621.1_g000011 Rmu_sc0002899.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00224570 |
| rosa_samantha | Rh1AG112200 Rh1DG117600 Rh3BG033200 Rh3BG134300 Rh3DG033000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 251 |
| AcsI | RAATTY | 1 cut(s) | 369 |
| AcuI | CTGAAG | 1 cut(s) | 300 |
| AgsI | TTSAA | 3 cut(s) | 211, 271, 375 |
| AluBI | AGCT | 2 cut(s) | 253, 361 |
| AluI | AGCT | 2 cut(s) | 253, 361 |
| Alw21I | GWGCWC | 1 cut(s) | 190 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| ApeKI | GCWGC | 1 cut(s) | 259 |
| ApoI | RAATTY | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| Bbv12I | GWGCWC | 1 cut(s) | 190 |
| BbvI | GCAGC | 1 cut(s) | 271 |
| BciVI | GTATCC | 1 cut(s) | 152 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 1 cut(s) | 183 |
| BfuAI | ACCTGC | 1 cut(s) | 251 |
| BfuI | GTATCC | 1 cut(s) | 152 |
| BisI | GCNGC | 1 cut(s) | 260 |
| BlsI | GCNGC | 1 cut(s) | 261 |
| BmsI | GCATC | 1 cut(s) | 246 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaBI | GATNNNNATC | 1 cut(s) | 149 |
| Bse8I | GATNNNNATC | 1 cut(s) | 149 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseJI | GATNNNNATC | 1 cut(s) | 149 |
| BseMII | CTCAG | 1 cut(s) | 18 |
| BseXI | GCAGC | 1 cut(s) | 271 |
| BsgI | GTGCAG | 1 cut(s) | 78 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiHKAI | GWGCWC | 1 cut(s) | 190 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 1 cut(s) | 190 |
| Bsp143I | GATC | 1 cut(s) | 78 |
| BspCNI | CTCAG | 1 cut(s) | 19 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspMI | ACCTGC | 1 cut(s) | 251 |
| BssMI | GATC | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 56 |
| Bst6I | CTCTTC | 1 cut(s) | 272 |
| BstDEI | CTNAG | 3 cut(s) | 27, 164, 203 |
| BstKTI | GATC | 1 cut(s) | 81 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 259 |
| BstV1I | GCAGC | 1 cut(s) | 271 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| BsuI | GTATCC | 1 cut(s) | 152 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BveI | ACCTGC | 1 cut(s) | 251 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| CviAII | CATG | 1 cut(s) | 285 |
| CviJI | RGCY | 4 cut(s) | 64, 253, 325, 361 |
| CviKI_1 | RGCY | 4 cut(s) | 64, 253, 325, 361 |
| DdeI | CTNAG | 3 cut(s) | 27, 164, 203 |
| DpnI | GATC | 1 cut(s) | 80 |
| DpnII | GATC | 1 cut(s) | 78 |
| DraI | TTTAAA | 1 cut(s) | 333 |
| Eam1104I | CTCTTC | 1 cut(s) | 272 |
| EarI | CTCTTC | 1 cut(s) | 272 |
| Eco57I | CTGAAG | 1 cut(s) | 300 |
| FaeI | CATG | 1 cut(s) | 288 |
| FaiI | YATR | 7 cut(s) | 17, 107, 141, 197, 286, 305, 340 |
| FatI | CATG | 1 cut(s) | 284 |
| Fnu4HI | GCNGC | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 1 cut(s) | 260 |
| FspBI | CTAG | 1 cut(s) | 183 |
| GluI | GCNGC | 1 cut(s) | 260 |
| Hin1II | CATG | 1 cut(s) | 288 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 2 cut(s) | 280, 395 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 183 |
| HpyAV | CCTTC | 2 cut(s) | 43, 301 |
| HpyCH4III | ACNGT | 1 cut(s) | 56 |
| HpyCH4V | TGCA | 5 cut(s) | 59, 76, 91, 246, 259 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 259 |
| HpyF3I | CTNAG | 3 cut(s) | 27, 164, 203 |
| Hsp92II | CATG | 1 cut(s) | 288 |
| Kzo9I | GATC | 1 cut(s) | 78 |
| LmnI | GCTCC | 1 cut(s) | 358 |
| LpnPI | CCDG | 3 cut(s) | 39, 45, 256 |
| Lsp1109I | GCAGC | 1 cut(s) | 271 |
| LweI | GCATC | 1 cut(s) | 246 |
| MaeI | CTAG | 1 cut(s) | 183 |
| MalI | GATC | 1 cut(s) | 80 |
| MboI | GATC | 1 cut(s) | 78 |
| MboII | GAAGA | 3 cut(s) | 14, 121, 259 |
| MhlI | GDGCHC | 1 cut(s) | 190 |
| MluCI | AATT | 2 cut(s) | 71, 369 |
| MnlI | CCTC | 1 cut(s) | 275 |
| MseI | TTAA | 2 cut(s) | 321, 332 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 259 |
| NdeII | GATC | 1 cut(s) | 78 |
| NlaIII | CATG | 1 cut(s) | 288 |
| PkrI | GCNGC | 1 cut(s) | 261 |
| SaqAI | TTAA | 2 cut(s) | 321, 332 |
| SatI | GCNGC | 1 cut(s) | 260 |
| Sau3AI | GATC | 1 cut(s) | 78 |
| SduI | GDGCHC | 1 cut(s) | 190 |
| SetI | ASST | 5 cut(s) | 165, 245, 255, 267, 363 |
| SfaNI | GCATC | 1 cut(s) | 246 |
| SgeI | CNNG | 9 cut(s) | 38, 72, 195, 203, 255, 262, 297, 367, 387 |
| Sse9I | AATT | 2 cut(s) | 71, 369 |
| SspMI | CTAG | 1 cut(s) | 183 |
| TaaI | ACNGT | 1 cut(s) | 56 |
| TaqI | TCGA | 1 cut(s) | 81 |
| TasI | AATT | 2 cut(s) | 71, 369 |
| Tru1I | TTAA | 2 cut(s) | 321, 332 |
| Tru9I | TTAA | 2 cut(s) | 321, 332 |
| TseI | GCWGC | 1 cut(s) | 259 |
| TspDTI | ATGAA | 2 cut(s) | 122, 320 |
| XapI | RAATTY | 1 cut(s) | 369 |
| XbaI | TCTAGA | 1 cut(s) | 182 |
| XspI | CTAG | 1 cut(s) | 183 |