Rmu_sc0002659.1_g000001

Zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002659.1
OG0014232
Physical Location & Seq
Reverse (-)
2 .. 5440
5439 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 997 bp
atgtttagcaggaactacaagaattatcgtagcctgtccccactatgtctcatcttgatccctgttaaagtgacgagatcacacaaatatgctgcaaacatgcctgcaaggaagtacgtccctatgagaggacgtagcgccaccctacatagaggtaggcatcgcgccaacgccaaagagagtggcactctagcgttacaggccatagccccagcaaggatgcatgggagacccgtgcgttcgaaggatactttggcacattccaatcctttgatcatcgacactcaaaatatgtctcatgagaatcttccaggttatggttatcgttgggggacgtctcaactggatggaacccggctctccgcctctgctggtgtgtataaggatgaatcagagccgtcaaggctctcttcacccactcgccctcgactccaggacttgcagaggctgcaatttcaacgatcctcttcttcttgcgtcttcttcgtgtggcggtggtggtcgggatcggagagagagagagaggaaacaaatcggcgccgatctggtcgatgtagagccaaacagtgtgccaccactcagagatggaggacgacggggcagcacggagaagtcctgctcatcgccaacgtcggcggagactcgaagctgttagaaattctggtcggaccatctagggttttcagagccctaaactcaccgccgtcgcacgaagcaaactcgagagctaaagaaaaaatgggaggcaagtgcccgcacagaagcgttaagaagagaagatactcccacaagactcaccgccgcagcaagttcctcgtcaaaggcgacgatttggtgtacgatgggctcaagaaagcagaggatcagatgaccacgccggtgttgcccgtcgatgaagatctacctggaatgggccaatactactgtcttcactgcgaccgatattttgctaatgtgactgtgagggatgagcatttcaagaccaagcgtcacagga

Protein Analysis

332

Amino Acids

38.09

Weight (kDa)

10.44

Isoelectric Point (pI)

66.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_jaz PF12171 306 - 332 2.2e-08 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36930
fragaria_vesca FvH4_6g16440
malus_domestica MD00G1155400.v1.1 MD12G1112600.v1.1
prunus_persica Prupe.7G129700_v2.0.a1 Prupe.7G129700_v2.0.a1
pyrus_communis pycom04g08760
rosa_chinensis RchiOBHm_Chr3g0470301
rosa_laevigata RLG00000024280
rosa_multiflora Rmu_sc0002659.1_g000001
rosa_roxburghii Rroxscaffold_6G00410970
rosa_rugosa Rorug03G0108000
rosa_samantha Rh3AG157700 Rh3BG182000 Rh3CG172700 Rh3DG192900
rosa_wichuraiana Rw3G015000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 537
AccB7I CCANNNNNTGG 1 cut(s) 317
AccII CGCG 1 cut(s) 165
AciI CCGC 7 cut(s) 363, 493, 636, 701, 755, 799, 802
AclWI GGATC 4 cut(s) 52, 456, 514, 870
AcsI RAATTY 1 cut(s) 657
AcyI GRCGYC 2 cut(s) 335, 538
AfaI GTAC 2 cut(s) 116, 839
AfiI CCNNNNNNNGG 4 cut(s) 128, 216, 317, 911
AgsI TTSAA 2 cut(s) 458, 979
AhdI GACNNNNNGTC 1 cut(s) 987
AjnI CCWGG 3 cut(s) 310, 432, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AleI CACNNNNGTG 1 cut(s) 878
AluBI AGCT 2 cut(s) 649, 728
AluI AGCT 2 cut(s) 649, 728
Alw26I GTCTC 5 cut(s) 53, 223, 300, 342, 633
AlwI GGATC 4 cut(s) 52, 456, 514, 870
AlwNI CAGNNNCTG 1 cut(s) 448
Ama87I CYCGRG 1 cut(s) 721
AoxI GGCC 2 cut(s) 201, 913
ApeKI GCWGC 4 cut(s) 92, 448, 601, 804
ApoI RAATTY 1 cut(s) 657
ArsI GACNNNNNNTTYG 2 cut(s) 929, 961
AspLEI GCGC 3 cut(s) 140, 167, 540
AspS9I GGNCC 2 cut(s) 668, 913
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 405, 690, 788
AsuII TTCGAA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 721
AvaII GGWCC 1 cut(s) 668
BaeGI GKGCMC 1 cut(s) 755
BanI GGYRCC 1 cut(s) 537
BanII GRGCYC 2 cut(s) 691, 849
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BbsI GAAGAC 2 cut(s) 472, 920
BbvI GCAGC 4 cut(s) 79, 435, 613, 816
BccI CCATC 4 cut(s) 341, 579, 679, 836
BceAI ACGGC 2 cut(s) 382, 688
BcgI CGANNNNNNTGC 2 cut(s) 796, 830
BciT130I CCWGG 3 cut(s) 312, 434, 906
BciVI GTATCC 1 cut(s) 241
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 5 cut(s) 53, 223, 300, 342, 633
BfaI CTAG 2 cut(s) 191, 675
BfoI RGCGCY 2 cut(s) 141, 541
BfuI GTATCC 1 cut(s) 241
BglI GCCNNNNNGGC 1 cut(s) 403
BglII AGATCT 1 cut(s) 898
BisI GCNGC 5 cut(s) 93, 449, 602, 802, 805
BlsI GCNGC 5 cut(s) 94, 450, 603, 803, 806
Bme1390I CCNGG 4 cut(s) 312, 355, 434, 906
Bme18I GGWCC 1 cut(s) 668
BmeRI GACNNNNNGTC 1 cut(s) 987
BmeT110I CYCGRG 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 668, 913
BmiI GGNNCC 2 cut(s) 352, 539
BmrFI CCNGG 4 cut(s) 312, 355, 434, 906
BmsI GCATC 2 cut(s) 169, 210
BpiI GAAGAC 2 cut(s) 472, 920
BplI GAGNNNNNCTC 2 cut(s) 172, 204
BpmI CTGGAG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 242
BpuEI CTTGAG 1 cut(s) 833
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 897
BsaHI GRCGYC 2 cut(s) 335, 538
BsaI GGTCTC 1 cut(s) 223
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 216, 317, 911
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 3 cut(s) 312, 434, 906
BseGI GGATG 4 cut(s) 225, 352, 391, 973
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 4 cut(s) 128, 216, 317, 911
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 1 cut(s) 348
BseSI GKGCMC 1 cut(s) 755
BseXI GCAGC 4 cut(s) 79, 435, 613, 816
BseYI CCCAGC 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 165
Bsh1285I CGRYCG 1 cut(s) 940
BshFI GGCC 2 cut(s) 203, 915
BshNI GGYRCC 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 940
BsiHKCI CYCGRG 1 cut(s) 721
BsiSI CCGG 2 cut(s) 355, 878
BslFI GGGAC 3 cut(s) 22, 104, 346
BslI CCNNNNNNNGG 4 cut(s) 128, 216, 317, 911
BsmAI GTCTC 5 cut(s) 53, 223, 300, 342, 633
BsmBI CGTCTC 1 cut(s) 342
BsmFI GGGAC 3 cut(s) 22, 104, 346
BsnI GGCC 2 cut(s) 203, 915
Bso31I GGTCTC 1 cut(s) 223
BsoBI CYCGRG 1 cut(s) 721
Bsp119I TTCGAA 1 cut(s) 242
Bsp1286I GDGCHC 3 cut(s) 691, 755, 849
Bsp143I GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
BspACI CCGC 7 cut(s) 363, 493, 636, 701, 755, 799, 802
BspANI GGCC 2 cut(s) 203, 915
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 165
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 352, 539
BspPI GGATC 4 cut(s) 52, 456, 514, 870
BspT104I TTCGAA 1 cut(s) 242
BspT107I GGYRCC 1 cut(s) 537
BspTNI GGTCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 877
BssMI GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
BssNI GRCGYC 2 cut(s) 335, 538
Bst2UI CCWGG 3 cut(s) 312, 434, 906
Bst4CI ACNGT 3 cut(s) 567, 926, 961
Bst6I CTCTTC 3 cut(s) 415, 472, 767
BstACI GRCGYC 2 cut(s) 335, 538
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBI TTCGAA 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 105, 755
BstDEI CTNAG 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 126
BstF5I GGATG 4 cut(s) 225, 352, 391, 973
BstFNI CGCG 1 cut(s) 165
BstH2I RGCGCY 2 cut(s) 141, 541
BstHHI GCGC 3 cut(s) 140, 167, 540
BstKTI GATC 8 cut(s) 60, 80, 276, 464, 509, 545, 865, 901
BstMAI GTCTC 5 cut(s) 53, 223, 300, 342, 633
BstMBI GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
BstMCI CGRYCG 1 cut(s) 940
BstMWI GCNNNNNNNGC 4 cut(s) 200, 403, 448, 883
BstNI CCWGG 3 cut(s) 312, 434, 906
BstNSI RCATGY 1 cut(s) 103
BstSCI CCNGG 4 cut(s) 310, 353, 432, 904
BstSLI GKGCMC 1 cut(s) 755
BstUI CGCG 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 79, 435, 613, 816
BstV2I GAAGAC 2 cut(s) 472, 920
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BsuI GTATCC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 203, 915
BtgZI GCGATG 2 cut(s) 146, 607
BtsCI GGATG 4 cut(s) 225, 352, 391, 973
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 572, 931
Cac8I GCNNGC 2 cut(s) 105, 755
CaiI CAGNNNCTG 1 cut(s) 448
CciI TCATGA 1 cut(s) 298
CfoI GCGC 3 cut(s) 140, 167, 540
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 2 cut(s) 668, 913
CseI GACGC 2 cut(s) 466, 977
Csp6I GTAC 2 cut(s) 115, 838
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 3 cut(s) 100, 224, 299
CviQI GTAC 2 cut(s) 115, 838
DdeI CTNAG 1 cut(s) 579
DinI GGCGCC 1 cut(s) 539
DpnI GATC 8 cut(s) 59, 79, 275, 463, 508, 544, 864, 900
DpnII GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
DriI GACNNNNNGTC 1 cut(s) 987
Eam1104I CTCTTC 3 cut(s) 415, 472, 767
Eam1105I GACNNNNNGTC 1 cut(s) 987
EarI CTCTTC 3 cut(s) 415, 472, 767
EciI GGCGGA 2 cut(s) 352, 651
Eco24I GRGCYC 2 cut(s) 691, 849
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 721
EcoNI CCTNNNNNAGG 1 cut(s) 126
EcoRII CCWGG 3 cut(s) 310, 432, 904
EcoT22I ATGCAT 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 691, 849
EgeI GGCGCC 1 cut(s) 539
EheI GGCGCC 1 cut(s) 539
Esp3I CGTCTC 1 cut(s) 342
FaeI CATG 3 cut(s) 103, 227, 302
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FaqI GGGAC 3 cut(s) 22, 104, 346
FatI CATG 3 cut(s) 99, 223, 298
FauI CCCGC 1 cut(s) 762
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 5 cut(s) 93, 449, 602, 802, 805
FokI GGATG 4 cut(s) 232, 359, 398, 980
FriOI GRGCYC 2 cut(s) 691, 849
Fsp4HI GCNGC 5 cut(s) 93, 449, 602, 802, 805
FspBI CTAG 2 cut(s) 191, 675
GlaI GCGC 3 cut(s) 139, 166, 539
GluI GCNGC 5 cut(s) 93, 449, 602, 802, 805
GsaI CCCAGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 416
HaeII RGCGCY 2 cut(s) 141, 541
HaeIII GGCC 2 cut(s) 203, 915
HapII CCGG 2 cut(s) 355, 878
HgaI GACGC 2 cut(s) 466, 977
HhaI GCGC 3 cut(s) 140, 167, 540
Hin1I GRCGYC 2 cut(s) 335, 538
Hin1II CATG 3 cut(s) 103, 227, 302
Hin6I GCGC 3 cut(s) 138, 165, 538
HinP1I GCGC 3 cut(s) 138, 165, 538
HinfI GANTC 5 cut(s) 304, 389, 429, 641, 793
HpaII CCGG 2 cut(s) 355, 878
HphI GGTGA 3 cut(s) 405, 690, 788
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 6 cut(s) 394, 511, 582, 668, 686, 867
Hpy188III TCNNGA 6 cut(s) 55, 299, 504, 723, 850, 979
Hpy8I GTNNAC 1 cut(s) 838
Hpy99I CGWCG 5 cut(s) 598, 635, 709, 830, 893
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 3 cut(s) 567, 926, 961
HpyCH4IV ACGT 4 cut(s) 117, 133, 335, 630
HpyCH4V TGCA 5 cut(s) 95, 107, 223, 442, 451
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 403, 448, 883
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 4 cut(s) 117, 133, 335, 630
Hsp92I GRCGYC 2 cut(s) 335, 538
Hsp92II CATG 3 cut(s) 103, 227, 302
HspAI GCGC 3 cut(s) 138, 165, 538
KasI GGCGCC 1 cut(s) 537
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
Lsp1109I GCAGC 4 cut(s) 79, 435, 613, 816
LweI GCATC 2 cut(s) 169, 210
MaeI CTAG 2 cut(s) 191, 675
MaeII ACGT 4 cut(s) 117, 133, 335, 630
MaeIII GTNAC 4 cut(s) 70, 195, 955, 989
MalI GATC 8 cut(s) 59, 79, 275, 463, 508, 544, 864, 900
MboI GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 3 cut(s) 691, 755, 849
MluCI AATT 3 cut(s) 22, 452, 657
Mly113I GGCGCC 1 cut(s) 538
MlyI GAGTC 3 cut(s) 423, 635, 787
MmeI TCCRAC 1 cut(s) 646
Mph1103I ATGCAT 1 cut(s) 225
MseI TTAA 2 cut(s) 66, 768
MslI CAYNNNNRTG 2 cut(s) 87, 878
MspI CCGG 2 cut(s) 355, 878
MspR9I CCNGG 4 cut(s) 312, 355, 434, 906
MvaI CCWGG 3 cut(s) 312, 434, 906
MvnI CGCG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 200, 403, 448, 883
NarI GGCGCC 1 cut(s) 538
NciI CCSGG 1 cut(s) 355
NdeII GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
NlaIII CATG 3 cut(s) 103, 227, 302
NlaIV GGNNCC 2 cut(s) 352, 539
NmuCI GTSAC 3 cut(s) 70, 955, 989
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 103
NspV TTCGAA 1 cut(s) 242
OliI CACNNNNGTG 1 cut(s) 878
PaeR7I CTCGAG 1 cut(s) 721
PagI TCATGA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 822
PfeI GAWTC 2 cut(s) 304, 389
PflMI CCANNNNNTGG 1 cut(s) 317
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 5 cut(s) 94, 450, 603, 803, 806
PleI GAGTC 3 cut(s) 423, 635, 787
PluTI GGCGCC 1 cut(s) 541
PpsI GAGTC 3 cut(s) 423, 635, 787
Psp6I CCWGG 3 cut(s) 310, 432, 904
PspFI CCCAGC 1 cut(s) 211
PspGI CCWGG 3 cut(s) 310, 432, 904
PspN4I GGNNCC 2 cut(s) 352, 539
PspPI GGNCC 2 cut(s) 668, 913
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 1 cut(s) 898
RsaI GTAC 2 cut(s) 116, 839
RsaNI GTAC 2 cut(s) 115, 838
RseI CAYNNNNRTG 2 cut(s) 87, 878
SaqAI TTAA 2 cut(s) 66, 768
SatI GCNGC 5 cut(s) 93, 449, 602, 802, 805
Sau3AI GATC 8 cut(s) 57, 77, 273, 461, 506, 542, 862, 898
Sau96I GGNCC 2 cut(s) 668, 913
SchI GAGTC 3 cut(s) 423, 635, 787
ScrFI CCNGG 4 cut(s) 312, 355, 434, 906
SduI GDGCHC 3 cut(s) 691, 755, 849
SetI ASST 9 cut(s) 120, 136, 157, 316, 338, 633, 651, 730, 907
SfaNI GCATC 2 cut(s) 169, 210
SfoI GGCGCC 1 cut(s) 539
Sfr274I CTCGAG 1 cut(s) 721
SfuI TTCGAA 1 cut(s) 242
SgrAI CRCCGGYG 1 cut(s) 877
SinI GGWCC 1 cut(s) 668
SlaI CTCGAG 1 cut(s) 721
SmiMI CAYNNNNRTG 2 cut(s) 87, 878
SmlI CTYRAG 2 cut(s) 721, 848
SmoI CTYRAG 2 cut(s) 721, 848
Sse9I AATT 3 cut(s) 22, 452, 657
SsiI CCGC 7 cut(s) 363, 493, 636, 701, 755, 799, 802
SspDI GGCGCC 1 cut(s) 537
SspMI CTAG 2 cut(s) 191, 675
StyD4I CCNGG 4 cut(s) 310, 353, 432, 904
TaaI ACNGT 3 cut(s) 567, 926, 961
TaiI ACGT 4 cut(s) 120, 136, 338, 633
TaqI TCGA 7 cut(s) 242, 279, 427, 550, 644, 722, 891
TaqII GACCGA 1 cut(s) 954
TasI AATT 3 cut(s) 22, 452, 657
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 2 cut(s) 304, 389
Tru1I TTAA 2 cut(s) 66, 768
Tru9I TTAA 2 cut(s) 66, 768
TscAI CASTG 2 cut(s) 572, 938
TseFI GTSAC 3 cut(s) 70, 955, 989
TseI GCWGC 4 cut(s) 92, 448, 601, 804
Tsp45I GTSAC 3 cut(s) 70, 955, 989
TspDTI ATGAA 2 cut(s) 402, 909
TspGWI ACGGA 1 cut(s) 621
TspRI CASTG 2 cut(s) 572, 938
Van91I CCANNNNNTGG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 668
XagI CCTNNNNNAGG 1 cut(s) 126
XapI RAATTY 1 cut(s) 657
XceI RCATGY 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 721
XspI CTAG 2 cut(s) 191, 675
ZraI GACGTC 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.