Rmu_sc0002835.1_g000015

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002835.1
OG0019378
Physical Location & Seq
Forward (+)
53946 .. 54670
725 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 543 bp
atgactcatgctttcacagtgaacctccaagtttttgtgccaaaagtgcttccactaacagaaataatccgatacgtggtggcttctaggcttcagaaaaacagcagtaccaaatgccaaaatctagaagtagttggagtcagtttgaatataaaggctggaattcaacacttctgtctccaccctggtggaagagcaattataaatgggataggtaagagcttatcattaagcgactatgatcttgagccatctagaatggcgctttacagatttggtaacacatcagctgctggcttttggtatgctttgggatacatggaagccaaacaaaggcttaaggaagcccctgcttcttttggtcgaaaagccgaagccagcacccccatgcttttagaagcaggcctggcttttttcactgtagcgggagttacttcggactccaacactgcaatgaactccagcgccatcaagccatctcgcctcctctcattcgtgttcgaagcctcaatccaacccccagatttttgtaccaggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

180

Amino Acids

19.6

Weight (kDa)

9.4

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_C PF02797 57 - 125 3.1e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0145521
rosa_multiflora Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa Rorug01G0320600
rosa_samantha Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AciI CCGC 1 cut(s) 425
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 2 cut(s) 109, 532
AfiI CCNNNNNNNGG 2 cut(s) 76, 333
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 2 cut(s) 148, 167
AjnI CCWGG 3 cut(s) 184, 405, 533
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 2 cut(s) 222, 290
AluI AGCT 2 cut(s) 222, 290
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 2 cut(s) 293, 540
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 2 cut(s) 265, 467
AsuII TTCGAA 1 cut(s) 501
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BbvI GCAGC 1 cut(s) 277
BccI CCATC 3 cut(s) 259, 476, 484
BciT130I CCWGG 3 cut(s) 186, 407, 535
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 87, 125, 255
BfmI CTRYAG 1 cut(s) 420
BfoI RGCGCY 2 cut(s) 266, 468
BfrI CTTAAG 1 cut(s) 338
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 186, 407, 535
BmrFI CCNGG 3 cut(s) 186, 407, 535
BpmI CTGGAG 1 cut(s) 445
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 333
Bse3DI GCAATG 1 cut(s) 459
BseBI CCWGG 3 cut(s) 186, 407, 535
BseDI CCNNGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 76, 333
BseMI GCAATG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 405
BslI CCNNNNNNNGG 2 cut(s) 76, 333
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 405
Bsp119I TTCGAA 1 cut(s) 501
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 425
BspANI GGCC 1 cut(s) 405
BspQI GCTCTTC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 501
BspTI CTTAAG 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 459
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 3 cut(s) 186, 407, 535
Bst4CI ACNGT 2 cut(s) 19, 421
Bst6I CTCTTC 1 cut(s) 187
BstAFI CTTAAG 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 295, 379, 403
BstH2I RGCGCY 2 cut(s) 266, 468
BstHHI GCGC 2 cut(s) 265, 467
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 46, 407
BstNI CCWGG 3 cut(s) 186, 407, 535
BstSCI CCNGG 3 cut(s) 184, 405, 533
BstSFI CTRYAG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 405
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 3 cut(s) 24, 417, 447
Cac8I GCNNGC 3 cut(s) 295, 379, 403
CaiI CAGNNNCTG 2 cut(s) 293, 540
CfoI GCGC 2 cut(s) 265, 467
Csp6I GTAC 2 cut(s) 108, 531
CviAII CATG 3 cut(s) 8, 319, 388
CviQI GTAC 2 cut(s) 108, 531
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 405
Eco57I CTGAAG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 184, 405, 533
FaeI CATG 3 cut(s) 11, 322, 391
FaiI YATR 7 cut(s) 9, 152, 203, 240, 306, 320, 389
FatI CATG 3 cut(s) 7, 318, 387
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 3 cut(s) 87, 125, 255
GlaI GCGC 2 cut(s) 264, 466
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 445
HaeII RGCGCY 2 cut(s) 266, 468
HaeIII GGCC 1 cut(s) 405
HhaI GCGC 2 cut(s) 265, 467
Hin1II CATG 3 cut(s) 11, 322, 391
Hin6I GCGC 2 cut(s) 263, 465
HinP1I GCGC 2 cut(s) 263, 465
HinfI GANTC 3 cut(s) 4, 138, 440
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 71, 96, 439, 542
Hpy188III TCNNGA 3 cut(s) 125, 245, 255
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 19, 421
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 407
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 11, 322, 391
HspAI GCGC 2 cut(s) 263, 465
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 187
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 3 cut(s) 87, 125, 255
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 278, 430
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 204
MluCI AATT 2 cut(s) 162, 198
MlyI GAGTC 2 cut(s) 147, 434
MmeI TCCRAC 3 cut(s) 115, 468, 538
MnlI CCTC 4 cut(s) 35, 494, 497, 517
MseI TTAA 2 cut(s) 230, 339
MslI CAYNNNNRTG 3 cut(s) 186, 386, 452
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 3 cut(s) 186, 407, 535
MvaI CCWGG 3 cut(s) 186, 407, 535
MwoI GCNNNNNNNGC 2 cut(s) 46, 407
NdeII GATC 1 cut(s) 241
NlaIII CATG 3 cut(s) 11, 322, 391
NspV TTCGAA 1 cut(s) 501
OliI CACNNNNGTG 1 cut(s) 186
PceI AGGCCT 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 2 cut(s) 146, 434
PpsI GAGTC 2 cut(s) 146, 434
Ppu21I YACGTR 1 cut(s) 76
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 3 cut(s) 184, 405, 533
PspGI CCWGG 3 cut(s) 184, 405, 533
PstNI CAGNNNCTG 2 cut(s) 293, 540
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 109, 532
RsaNI GTAC 2 cut(s) 108, 531
RseI CAYNNNNRTG 3 cut(s) 186, 386, 452
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 230, 339
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 2 cut(s) 147, 434
ScrFI CCNGG 3 cut(s) 186, 407, 535
SetI ASST 5 cut(s) 27, 78, 217, 224, 292
SfcI CTRYAG 1 cut(s) 420
SfuI TTCGAA 1 cut(s) 501
SmiMI CAYNNNNRTG 3 cut(s) 186, 386, 452
SmlI CTYRAG 2 cut(s) 245, 338
SmoI CTYRAG 2 cut(s) 245, 338
Sse9I AATT 2 cut(s) 162, 198
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 1 cut(s) 425
SspMI CTAG 3 cut(s) 87, 125, 255
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 3 cut(s) 184, 405, 533
TaaI ACNGT 2 cut(s) 19, 421
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 364, 501
TasI AATT 2 cut(s) 162, 198
Tru1I TTAA 2 cut(s) 230, 339
Tru9I TTAA 2 cut(s) 230, 339
TscAI CASTG 3 cut(s) 24, 424, 454
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 3 cut(s) 24, 424, 454
Vha464I CTTAAG 1 cut(s) 338
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 124, 254
XspI CTAG 3 cut(s) 87, 125, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.