Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002943.1

Orthogroup ID

OG0015528

Physical Location & Seq

Genomic Coordinates Forward (+)

85582 .. 87601

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002943.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgaagattctatgcctccatggatttagaaccagtgggagcttcctgcaaaagcaaattagcaaatgggatgcttctatcctttctcagtttgacatggagtttccagatgggaagtttcctgctggaggaaaatctgacatagaaggcatcttcccacctccttattttgagtggttccaatttgacaaggacttcacggagtacacaaacttggaagcatgcatctcttatttatgtgattacataacaagcaaaggcccctttgatggtttgcttggcttctctcagggtgcgacactatcaggactcttgataggctaccaagctcagggaaaattgttgaaggagcatccagctttcaaatttttcatatcgatatcaggatcaaagttccgaaagccaagtatctgtgagattgcctacaaagacagaatcaaggtcaaatctgtccacttgataggagacaaagattggttaaaactaccttctgaggagcttgcttctgaatttcacgaccccctcatcataaggcacccacaagggcatactgtcccaaggctagatgaagtagccactgaacaattacgtgagtggactaagacaatcatccaattcaatactggtactactcctcctcctccttcagattgtaatcatgaactgaaaaatggagaagccaaaagtccagtagttgcagcatcatgtaataaggtacaaaccgggcagctggggacaagtggagtacttaacacagagaaaacagagagagaagtcgaggcagtccaagcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 FSH1

Protein Analysis

264

Amino Acids

29.48

Weight (kDa)

6.0

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015528)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29570
malus_domestica	MD12G1099800.v1.1
prunus_persica	Prupe.7G024500_v2.0.a1 Prupe.7G024500_v2.0.a1 Prupe.7G024500_v2.0.a1
pyrus_communis	pycom12g09380
rosa_chinensis	RchiOBHm_Chr3g0495211
rosa_laevigata	RLG00000022638
rosa_multiflora	Rmu_sc0002943.1_g000026
rosa_roxburghii	Rroxscaffold_6G00390690
rosa_rugosa	Rorug03G0270000
rosa_samantha	Rh3AG319700 Rh3BG354800 Rh3CG351700 Rh3DG353800
rosa_wichuraiana	Rw3G027920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	534
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	365, 509
AcuI	CTGAAG	1 cut(s)	630
AfaI	GTAC	4 cut(s)	206, 628, 717, 747
AfiI	CCNNNNNNNGG	3 cut(s)	128, 269, 331
AgsI	TTSAA	3 cut(s)	346, 364, 619
AluBI	AGCT	5 cut(s)	42, 329, 359, 499, 730
AluI	AGCT	5 cut(s)	42, 329, 359, 499, 730
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	2 cut(s)	698, 727
ApoI	RAATTY	2 cut(s)	365, 509
AspS9I	GGNCC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	710, 739
BccI	CCATC	2 cut(s)	104, 263
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	563
BisI	GCNGC	2 cut(s)	699, 728
BlsI	GCNGC	2 cut(s)	700, 729
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	1 cut(s)	724
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	3 cut(s)	179, 262, 536
BmrFI	CCNGG	1 cut(s)	724
BmsI	GCATC	5 cut(s)	61, 159, 234, 361, 710
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	724
Bsa29I	ATCGAT	1 cut(s)	377
BsaAI	YACGTR	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	19, 557
BsaXI	ACNNNNNCTCC	4 cut(s)	619, 622, 649, 652
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 269, 331
Bse1I	ACTGG	3 cut(s)	33, 628, 689
Bse8I	GATNNNNATC	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	19, 557
BseGI	GGATG	3 cut(s)	76, 352, 609
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	128, 269, 331
BseMII	CTCAG	4 cut(s)	101, 302, 344, 483
BseNI	ACTGG	3 cut(s)	33, 628, 689
BseRI	GAGGAG	4 cut(s)	509, 624, 627, 630
BseXI	GCAGC	2 cut(s)	710, 739
BseYI	CCCAGC	1 cut(s)	730
BshFI	GGCC	1 cut(s)	261
BshNI	GGYRCC	1 cut(s)	534
BshVI	ATCGAT	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	2 cut(s)	539, 748
BslI	CCNNNNNNNGG	3 cut(s)	128, 269, 331
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	539, 748
BsnI	GGCC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	386
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	4 cut(s)	100, 301, 343, 484
BspDI	ATCGAT	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	3 cut(s)	179, 262, 536
BspPI	GGATC	1 cut(s)	394
BspT107I	GGYRCC	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	33, 628, 689
BssECI	CCNNGG	2 cut(s)	19, 557
BssMI	GATC	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	19, 557
Bst4CI	ACNGT	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	223, 501
BstDEI	CTNAG	5 cut(s)	87, 288, 330, 492, 600
BstDSI	CCRYGG	1 cut(s)	19
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	76, 352, 609
BstKTI	GATC	1 cut(s)	389
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	1 cut(s)	386
BstMWI	GCNNNNNNNGC	1 cut(s)	788
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	722
BstV1I	GCAGC	2 cut(s)	710, 739
Bsu15I	ATCGAT	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	3 cut(s)	76, 352, 609
BtsIMutI	CAGTG	2 cut(s)	40, 576
Cac8I	GCNNGC	2 cut(s)	223, 501
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	377
Csp6I	GTAC	4 cut(s)	205, 627, 716, 746
CviAII	CATG	5 cut(s)	20, 97, 222, 659, 705
CviQI	GTAC	4 cut(s)	205, 627, 716, 746
DdeI	CTNAG	5 cut(s)	87, 288, 330, 492, 600
DpnI	GATC	1 cut(s)	388
DpnII	GATC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	19, 557
Eco32I	GATATC	1 cut(s)	381
Eco57I	CTGAAG	1 cut(s)	630
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	381
EcoT14I	CCWWGG	2 cut(s)	19, 557
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	2 cut(s)	19, 557
FaeI	CATG	5 cut(s)	23, 100, 225, 662, 708
FaqI	GGGAC	2 cut(s)	539, 748
FatI	CATG	5 cut(s)	19, 96, 221, 658, 704
Fnu4HI	GCNGC	2 cut(s)	699, 728
FokI	GGATG	3 cut(s)	83, 339, 596
Fsp4HI	GCNGC	2 cut(s)	699, 728
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	2 cut(s)	699, 728
GsaI	CCCAGC	1 cut(s)	734
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	1 cut(s)	723
Hin1II	CATG	5 cut(s)	23, 100, 225, 662, 708
HinfI	GANTC	3 cut(s)	7, 309, 435
HpaII	CCGG	1 cut(s)	723
Hpy166II	GTNNAC	3 cut(s)	207, 454, 597
Hpy188I	TCNGA	5 cut(s)	139, 398, 493, 508, 649
Hpy188III	TCNNGA	6 cut(s)	107, 306, 313, 384, 515, 659
Hpy8I	GTNNAC	3 cut(s)	207, 454, 597
HpyAV	CCTTC	4 cut(s)	140, 340, 498, 654
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	3 cut(s)	49, 225, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	788
HpyF3I	CTNAG	5 cut(s)	87, 288, 330, 492, 600
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	5 cut(s)	23, 100, 225, 662, 708
Kzo9I	GATC	1 cut(s)	386
LmnI	GCTCC	3 cut(s)	39, 349, 496
Lsp1109I	GCAGC	2 cut(s)	710, 739
LweI	GCATC	5 cut(s)	61, 159, 234, 361, 710
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	1 cut(s)	589
MalI	GATC	1 cut(s)	388
MboI	GATC	1 cut(s)	386
MboII	GAAGA	2 cut(s)	16, 145
MluCI	AATT	7 cut(s)	57, 182, 338, 365, 509, 584, 614
MlyI	GAGTC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	26, 122, 171, 487, 533, 645, 648, 651, 772
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	2 cut(s)	479, 750
MspA1I	CMGCKG	1 cut(s)	730
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	1 cut(s)	724
MwoI	GCNNNNNNNGC	1 cut(s)	788
NciI	CCSGG	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	386
NlaIII	CATG	5 cut(s)	23, 100, 225, 662, 708
NlaIV	GGNNCC	3 cut(s)	179, 262, 536
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PagI	TCATGA	1 cut(s)	658
PfeI	GAWTC	2 cut(s)	7, 435
PkrI	GCNGC	2 cut(s)	700, 729
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	730
PspN4I	GGNNCC	3 cut(s)	179, 262, 536
PspPI	GGNCC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	4 cut(s)	206, 628, 717, 747
RsaNI	GTAC	4 cut(s)	205, 627, 716, 746
SaqAI	TTAA	2 cut(s)	479, 750
SatI	GCNGC	2 cut(s)	699, 728
Sau3AI	GATC	1 cut(s)	386
Sau96I	GGNCC	1 cut(s)	260
ScaI	AGTACT	1 cut(s)	747
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	724
SfaNI	GCATC	5 cut(s)	61, 159, 234, 361, 710
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	7 cut(s)	57, 182, 338, 365, 509, 584, 614
SspMI	CTAG	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	722
StyI	CCWWGG	2 cut(s)	19, 557
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	377, 777
TasI	AATT	7 cut(s)	57, 182, 338, 365, 509, 584, 614
TatI	WGTACW	2 cut(s)	204, 745
TfiI	GAWTC	2 cut(s)	7, 435
Tru1I	TTAA	2 cut(s)	479, 750
Tru9I	TTAA	2 cut(s)	479, 750
TscAI	CASTG	2 cut(s)	40, 583
TseI	GCWGC	2 cut(s)	698, 727
TspDTI	ATGAA	4 cut(s)	17, 361, 582, 675
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	40, 583
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	365, 509
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	563
ZrmI	AGTACT	1 cut(s)	747
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.