Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003137.1

Orthogroup ID

OG0018383

Physical Location & Seq

Genomic Coordinates Forward (+)

30256 .. 32190

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003137.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atgtttccttcaatccaatatctggcaatttaccttcaaatttctccacagaaggattttcactcttcattttctattaaatgtggaggcacaaaccagaaatctgtatctgggatcgaatacgatgatgattctgaaatcctgggagctgcttcatcctacaaaagctctagaaatcaatgggcggtgagcaacacagggaacttccttttcaactcgaacggacctcaatacatagcaaacacagattctcaaatcacggaaacattagagtcggagctgtacaagacagcaagaatctcaccaacctcacttaggtactatggcctagatttgaagaacggaaaatatgtcgttgtgcttcactttgcagagttgcaaatggaggaaacaaattcctggaaaggtcttggaaggcgcttgtttgatgtctacattcagggtgagagagtggtccaagacttgaacattcagaaggaagcagggggatccaagaaggcattgatcaaaacattcgagacaaacgtgtcaaacacatttatggacatccatttcctgtgggctggaaaaggcacttgctgcattccatatcaaggcacatatggacctctggtctcagcaatccatgtttatcaagtctcggatgccgggtcttcttcgaaaagcgagaggaagcgtgtgggaaggattgtgggagtgtcatttggatgtgcagctgttgtgatcataatgtcatcagtgttctacctatggtggattaaagatgatgctgaacccagacacctcgttcttgtcgtagtctcggatgccgggtcttcttctaaaagcgagaggaagcgtgtgggaaggattgtgggagtgtcatttggatgtgcagctgttgtgatcataatgtcatcagtgttctacctgtggtggattaaagatgatgctgaacccagacacgtgaggatacatagagagatgcgcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AUX_IAA LRR_1 LRR_4 LRR_8 Malectin

Protein Analysis

325

Amino Acids

36.41

Weight (kDa)

9.02

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018383)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g28980 FvH4_2g28980
prunus_persica	Prupe.1G481600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0297831
rosa_laevigata	RLG00000011557
rosa_multiflora	Rmu_sc0003137.1_g000013
rosa_roxburghii	Rroxscaffold_7G00170160 Rroxscaffold_7G00179010
rosa_rugosa	Rorug06G0275800
rosa_samantha	Rh6CG400800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	526
Acc16I	TGCGCA	1 cut(s)	968
AccB7I	CCANNNNNTGG	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	122, 483, 496
AcsI	RAATTY	2 cut(s)	39, 394
AcvI	CACGTG	1 cut(s)	946
AfaI	GTAC	2 cut(s)	284, 320
AfiI	CCNNNNNNNGG	3 cut(s)	22, 315, 593
AflIII	ACRYGT	2 cut(s)	525, 943
AgsI	TTSAA	5 cut(s)	12, 38, 214, 337, 466
AhdI	GACNNNNNGTC	1 cut(s)	611
AjnI	CCWGG	2 cut(s)	141, 398
AluBI	AGCT	5 cut(s)	149, 168, 280, 716, 878
AluI	AGCT	5 cut(s)	149, 168, 280, 716, 878
Alw26I	GTCTC	4 cut(s)	512, 619, 643, 805
AlwI	GGATC	3 cut(s)	122, 483, 496
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	4 cut(s)	149, 579, 713, 875
ApoI	RAATTY	2 cut(s)	39, 394
AspLEI	GCGC	2 cut(s)	420, 969
AspS9I	GGNCC	3 cut(s)	224, 454, 605
AsuC2I	CCSGG	2 cut(s)	649, 811
AsuHPI	GGTGA	3 cut(s)	199, 294, 455
AsuII	TTCGAA	1 cut(s)	659
AvaII	GGWCC	3 cut(s)	224, 454, 605
BamHI	GGATCC	1 cut(s)	488
BbrPI	CACGTG	1 cut(s)	946
BbsI	GAAGAC	2 cut(s)	645, 807
BbvI	GCAGC	4 cut(s)	136, 566, 725, 887
BciT130I	CCWGG	2 cut(s)	143, 400
BciVI	GTATCC	1 cut(s)	945
BclI	TGATCA	3 cut(s)	504, 723, 885
BcnI	CCSGG	2 cut(s)	649, 811
BcoDI	GTCTC	4 cut(s)	512, 619, 643, 805
BfaI	CTAG	2 cut(s)	171, 329
BfoI	RGCGCY	1 cut(s)	421
BfuI	GTATCC	1 cut(s)	945
BisI	GCNGC	4 cut(s)	150, 580, 714, 876
BlsI	GCNGC	4 cut(s)	151, 581, 715, 877
Bme1390I	CCNGG	4 cut(s)	143, 400, 649, 811
Bme18I	GGWCC	3 cut(s)	224, 454, 605
BmeRI	GACNNNNNGTC	1 cut(s)	611
BmgT120I	GGNCC	3 cut(s)	224, 454, 605
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	4 cut(s)	143, 400, 649, 811
BmsI	GCATC	5 cut(s)	634, 757, 796, 919, 954
BpiI	GAAGAC	2 cut(s)	645, 807
Bpu14I	TTCGAA	1 cut(s)	659
BpuMI	CCSGG	2 cut(s)	649, 811
BsaAI	YACGTR	1 cut(s)	946
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 315, 593
BseBI	CCWGG	2 cut(s)	143, 400
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	6 cut(s)	155, 546, 649, 713, 811, 875
BseLI	CCNNNNNNNGG	3 cut(s)	22, 315, 593
BseMII	CTCAG	1 cut(s)	630
BseXI	GCAGC	4 cut(s)	136, 566, 725, 887
BsgI	GTGCAG	2 cut(s)	732, 894
BshFI	GGCC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	648, 810
BslI	CCNNNNNNNGG	3 cut(s)	22, 315, 593
BsmAI	GTCTC	4 cut(s)	512, 619, 643, 805
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	114, 488, 504, 723, 885
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	629
BspLI	GGNNCC	1 cut(s)	490
BspPI	GGATC	3 cut(s)	122, 483, 496
BspT104I	TTCGAA	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	5 cut(s)	114, 488, 504, 723, 885
Bst2UI	CCWGG	2 cut(s)	143, 400
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstAUI	TGTACA	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	946
BstBI	TTCGAA	1 cut(s)	659
BstDEI	CTNAG	2 cut(s)	314, 616
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	6 cut(s)	155, 546, 649, 713, 811, 875
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	2 cut(s)	420, 969
BstKTI	GATC	5 cut(s)	117, 491, 507, 726, 888
BstMAI	GTCTC	4 cut(s)	512, 619, 643, 805
BstMBI	GATC	5 cut(s)	114, 488, 504, 723, 885
BstMWI	GCNNNNNNNGC	1 cut(s)	579
BstNI	CCWGG	2 cut(s)	143, 400
BstSCI	CCNGG	4 cut(s)	141, 398, 647, 809
BstV1I	GCAGC	4 cut(s)	136, 566, 725, 887
BstV2I	GAAGAC	2 cut(s)	645, 807
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	6 cut(s)	155, 546, 649, 713, 811, 875
BtsIMutI	CAGTG	2 cut(s)	744, 906
CfoI	GCGC	2 cut(s)	420, 969
Cfr13I	GGNCC	3 cut(s)	224, 454, 605
Csp6I	GTAC	2 cut(s)	283, 319
CviAII	CATG	1 cut(s)	626
CviJI	RGCY	7 cut(s)	149, 168, 280, 327, 563, 716, 878
CviKI_1	RGCY	7 cut(s)	149, 168, 280, 327, 563, 716, 878
CviQI	GTAC	2 cut(s)	283, 319
DdeI	CTNAG	2 cut(s)	314, 616
DpnI	GATC	5 cut(s)	116, 490, 506, 725, 887
DpnII	GATC	5 cut(s)	114, 488, 504, 723, 885
DrdI	GACNNNNNNGTC	1 cut(s)	526
DriI	GACNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	3 cut(s)	224, 454, 605
Eco72I	CACGTG	1 cut(s)	946
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	141, 398
FaeI	CATG	1 cut(s)	629
FatI	CATG	1 cut(s)	625
FauNDI	CATATG	1 cut(s)	601
FbaI	TGATCA	3 cut(s)	504, 723, 885
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	4 cut(s)	150, 580, 714, 876
FokI	GGATG	6 cut(s)	142, 533, 656, 720, 818, 882
Fsp4HI	GCNGC	4 cut(s)	150, 580, 714, 876
FspBI	CTAG	2 cut(s)	171, 329
FspI	TGCGCA	1 cut(s)	968
GlaI	GCGC	2 cut(s)	419, 968
GluI	GCNGC	4 cut(s)	150, 580, 714, 876
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	2 cut(s)	648, 810
HhaI	GCGC	2 cut(s)	420, 969
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	2 cut(s)	418, 967
HinP1I	GCGC	2 cut(s)	418, 967
HinfI	GANTC	4 cut(s)	131, 248, 272, 297
HpaII	CCGG	2 cut(s)	648, 810
HphI	GGTGA	3 cut(s)	199, 294, 455
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	5 cut(s)	136, 277, 474, 643, 805
Hpy188III	TCNNGA	2 cut(s)	171, 517
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	8 cut(s)	18, 44, 46, 408, 469, 490, 678, 840
HpyCH4IV	ACGT	2 cut(s)	525, 945
HpyCH4V	TGCA	5 cut(s)	371, 379, 582, 713, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	579
HpyF3I	CTNAG	2 cut(s)	314, 616
HpySE526I	ACGT	2 cut(s)	525, 945
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	2 cut(s)	418, 967
Ksp22I	TGATCA	3 cut(s)	504, 723, 885
Kzo9I	GATC	5 cut(s)	114, 488, 504, 723, 885
LmnI	GCTCC	2 cut(s)	146, 277
Lsp1109I	GCAGC	4 cut(s)	136, 566, 725, 887
LweI	GCATC	5 cut(s)	634, 757, 796, 919, 954
MaeI	CTAG	2 cut(s)	171, 329
MaeII	ACGT	2 cut(s)	525, 945
MalI	GATC	5 cut(s)	116, 490, 506, 725, 887
MboI	GATC	5 cut(s)	114, 488, 504, 723, 885
MboII	GAAGA	6 cut(s)	57, 349, 645, 648, 807, 810
MflI	RGATCY	1 cut(s)	488
MluCI	AATT	3 cut(s)	27, 39, 394
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	80, 237, 319, 379, 618, 663, 794, 825, 942
MseI	TTAA	3 cut(s)	78, 759, 921
MslI	CAYNNNNRTG	3 cut(s)	539, 706, 868
MspA1I	CMGCKG	2 cut(s)	716, 878
MspI	CCGG	2 cut(s)	648, 810
MspR9I	CCNGG	4 cut(s)	143, 400, 649, 811
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	2 cut(s)	143, 400
MwoI	GCNNNNNNNGC	1 cut(s)	579
NciI	CCSGG	2 cut(s)	649, 811
NdeI	CATATG	1 cut(s)	601
NdeII	GATC	5 cut(s)	114, 488, 504, 723, 885
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	968
NspV	TTCGAA	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	2 cut(s)	522, 792
PctI	GAATGC	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	131, 248, 297
PflMI	CCANNNNNTGG	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	151, 581, 715, 877
PleI	GAGTC	1 cut(s)	280
PmaCI	CACGTG	1 cut(s)	946
PmlI	CACGTG	1 cut(s)	946
PpsI	GAGTC	1 cut(s)	280
Ppu21I	YACGTR	1 cut(s)	946
Psp6I	CCWGG	2 cut(s)	141, 398
PspCI	CACGTG	1 cut(s)	946
PspGI	CCWGG	2 cut(s)	141, 398
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	3 cut(s)	224, 454, 605
PsuI	RGATCY	1 cut(s)	488
PvuII	CAGCTG	2 cut(s)	716, 878
RsaI	GTAC	2 cut(s)	284, 320
RsaNI	GTAC	2 cut(s)	283, 319
RseI	CAYNNNNRTG	3 cut(s)	539, 706, 868
SaqAI	TTAA	3 cut(s)	78, 759, 921
SatI	GCNGC	4 cut(s)	150, 580, 714, 876
Sau3AI	GATC	5 cut(s)	114, 488, 504, 723, 885
Sau96I	GGNCC	3 cut(s)	224, 454, 605
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	143, 400, 649, 811
SfaNI	GCATC	5 cut(s)	634, 757, 796, 919, 954
SfuI	TTCGAA	1 cut(s)	659
SinI	GGWCC	3 cut(s)	224, 454, 605
SmiMI	CAYNNNNRTG	3 cut(s)	539, 706, 868
Sse9I	AATT	3 cut(s)	27, 39, 394
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	171, 329
StyD4I	CCNGG	4 cut(s)	141, 398, 647, 809
TaiI	ACGT	2 cut(s)	528, 948
TaqI	TCGA	4 cut(s)	117, 218, 516, 659
TasI	AATT	3 cut(s)	27, 39, 394
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	3 cut(s)	131, 248, 297
Tru1I	TTAA	3 cut(s)	78, 759, 921
Tru9I	TTAA	3 cut(s)	78, 759, 921
TscAI	CASTG	2 cut(s)	744, 906
TseI	GCWGC	4 cut(s)	149, 579, 713, 875
TspDTI	ATGAA	2 cut(s)	57, 144
TspGWI	ACGGA	3 cut(s)	237, 275, 357
TspRI	CASTG	2 cut(s)	744, 906
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	3 cut(s)	224, 454, 605
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	2 cut(s)	39, 394
XbaI	TCTAGA	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	171, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.