Rh6CG400800

AUX/IAA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018383
Physical Location & Seq
Forward (+)
58750523 .. 58754352
3830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG400800.1

Sequence Viewer

Length: 1962 bp
ATGGAGCTCTGGAGTGCTTTGTCTTTGCTTCTTCTTTCTGCATTCCAGCTTGTTTCTGCACAAACAACCACTTCTCCTGATGAAGTTGCTGCTCTCCACAAGGTAGTAGAACACTGGAACTTGGTAAATCACTTGAATCTTACCATTGACCCCTGCACTGAAAATGCAACATGGGCATCTGGAATTGCGAATCCCCGTGTGGCTTGCGATTGTACAGGCAGCACCTGCCATATTACTCACCTGAAGATATATGCCTTGGACATAATTGGTGATCTACCAGCAGAACTATTTGAGCTAAAGCAGCTAATAGACTTGAATCTTGGTCAGAATGTATTAAGCGGGCGCATTCCTCCTGAAATAGGACTGTTATCCAACATGCAGTATCTTAGCTTAGGCGTAAACAATCTGTCAGGTCCAGTTCCATCAGAGCTTGGCAACTTGGCCAAGTTGGTTGAGCTAAGTTTTAGCTCAAACCAGTTCTCTGGACCATTGCCCTTGGACCTTGGAAAACTGACCTCCTTGCAGCAGTTGTACATAGACAGCAGTGGAGTAACTGGACCAATTCCACAGGAGCTTTCAAACTTAAAATCCCTTCAAACTTTCTGGGCATCTGATAATCTCTTCACCGGAAAAATCCCACAGTTCTTAGGGACTCTTACAGAACTCATAGACTTGCGACTTGAAGGCACGTTGCTTGATGGGCCAATTCCAAGCAATTTTGGTGCTCTAACCAAACTAGACATCTTGAGAATTGGTGATCTTAGCAAGGAAGATTCTTCTCTTGATTTTTTGGAAAATCTAACAAGTTTGTCCATGCTGTCTATGAGAAGTTGTCGACTATCTGGAGAAATTCCTGAACAAATTGGAAAGTTTTCCAAGTTGCAATACCTAGATTTGAGATTCAACAAGTTGACTGGCTCAATACCAAACTCATTCCAAGATTTTACTGTGCTGCAATTTCTATATCTTGGAAACAATTACTTGAGTGGAGAACTACCTACAAGTATTGTAAGTCCACAGCTTATTGCACTAGATGTTTCCTTCAATCCAATATCTGGCAATTTACCTTCAAATTTCTCCACAGAAGGATTTTCACTGAATGTGATTGGTACATCCATCAATGCAAATGGCTTATCAGACAGTGGGGAACCTGGACTGTTGCATTGTCTCCAAGGAGACACCAAGTGCAGTAATAAACTACCAGCTGTGTCTTCATTTTCTATTAAATGTGGAGGCACAAGCCAGAAATCTGTATCTGGGATCGAATACGATGATGATTCTGAAATCCTGGGAGCTGCTTCATCCTACAAAAGCTCTAGAAATCAATGGGCGGTGATCAACACAGGGAACTTCCTTTTCAACTCAAACGGACCTCAATACATAGAAAACACAGATTCTCAAATCACGGAAACATTAGAGTCGGAGCTGTACAAGACAGCAAGAATCTCACCAACCTCACTTAGGTACTATGGCCTAGATTTGAAGAACGGAAAATATGTCGTTGTGCTTCACTTTGCAGAGTTGCAAATGGAGGAAACAAATTCCTGGAAAGGTCTCGGAAGGCGCTTGTTTGATGTCTACATTCAGGGTGAGAGAGTGGTCCAAGACTTGAACATTCAGAAGGAAGCAGGGGGATCCAAGAAGGCATTGATCAAAACATTCGAGACAAACGTGTCAAACACAGTTATGGACATCCATTTCCTGTGGGCTGGAAAAGGCACTTGCTGCATTCCATATCAAGGCACATATGGACCTCTGGTCTCAGCAATCCATGTTTATCAAGTCTCGGATGCCGGGTCTTCTTCGAAAAGCGAGAGGAAGCGTGTGGGAAGGATTGTGGGAGTGTCATTTGGATGTGCTGCTGTTGTGATCATAATGTCATCAGTGTTCTACCTATGGTGGATTAAAGATGATGCTGAACCCAGACATGTGAGGATACATAGAGAGATGCGCAAGAAATGA

Protein Analysis

653

Amino Acids

71.51

Weight (kDa)

5.36

Isoelectric Point (pI)

34.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 73 - 181 5.3e-08 Leucine-rich repeat region
LRR_14 PF23598 188 - 275 1e-06 Leucine-rich repeat region
LRR_14 PF23598 245 - 327 4e-08 Leucine-rich repeat region
LRR_8 PF13855 289 - 328 6.1e-07 Leucine rich repeat
Malectin PF11721 406 - 590 1.5e-41 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018383)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28980 FvH4_2g28980
prunus_persica Prupe.1G481600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297831
rosa_laevigata RLG00000011557
rosa_multiflora Rmu_sc0003137.1_g000013
rosa_roxburghii Rroxscaffold_7G00170160 Rroxscaffold_7G00179010
rosa_rugosa Rorug06G0275800
rosa_samantha Rh6CG400800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
AasI GACNNNNNNGTC 1 cut(s) 1672
Acc16I TGCGCA 1 cut(s) 1952
Acc36I ACCTGC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 1055
AccI GTMKAC 2 cut(s) 835, 1578
AciI CCGC 2 cut(s) 339, 1331
AclWI GGATC 3 cut(s) 1268, 1629, 1642
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 3 cut(s) 849, 1072, 1540
AcuI CTGAAG 1 cut(s) 263
AdeI CACNNNGTG 1 cut(s) 1185
AfaI GTAC 5 cut(s) 214, 533, 1111, 1430, 1466
AfiI CCNNNNNNNGG 4 cut(s) 359, 1055, 1461, 1739
AflIII ACRYGT 2 cut(s) 1671, 1927
AhdI GACNNNNNGTC 1 cut(s) 1757
AjnI CCWGG 3 cut(s) 1150, 1287, 1544
Alw21I GWGCWC 2 cut(s) 9, 727
Alw26I GTCTC 6 cut(s) 1170, 1172, 1559, 1658, 1765, 1789
AlwI GGATC 3 cut(s) 1268, 1629, 1642
AlwNI CAGNNNCTG 1 cut(s) 225
AoxI GGCC 3 cut(s) 441, 701, 1471
ApeKI GCWGC 8 cut(s) 89, 219, 301, 523, 952, 1295, 1725, 1859
ApoI RAATTY 3 cut(s) 849, 1072, 1540
Asp700I GAANNNNTTC 1 cut(s) 871
AspLEI GCGC 3 cut(s) 345, 1566, 1953
AspS9I GGNCC 8 cut(s) 413, 485, 499, 557, 701, 1370, 1600, 1751
AsuC2I CCSGG 1 cut(s) 1795
AsuHPI GGTGA 7 cut(s) 230, 281, 616, 767, 1345, 1440, 1601
AsuII TTCGAA 1 cut(s) 1805
AvaII GGWCC 7 cut(s) 413, 485, 499, 557, 1370, 1600, 1751
BalI TGGCCA 1 cut(s) 443
BamHI GGATCC 1 cut(s) 1634
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 2 cut(s) 1203, 1791
Bbv12I GWGCWC 2 cut(s) 9, 727
BbvI GCAGC 8 cut(s) 76, 231, 313, 535, 939, 1282, 1712, 1846
BccI CCATC 3 cut(s) 430, 692, 1124
BciT130I CCWGG 3 cut(s) 1152, 1289, 1546
BciVI GTATCC 1 cut(s) 1929
BclI TGATCA 3 cut(s) 1335, 1650, 1869
BcnI CCSGG 1 cut(s) 1795
BcoDI GTCTC 6 cut(s) 1170, 1172, 1559, 1658, 1765, 1789
BfaI CTAG 5 cut(s) 737, 890, 1031, 1317, 1475
BfoI RGCGCY 1 cut(s) 1567
BfuAI ACCTGC 1 cut(s) 233
BfuI GTATCC 1 cut(s) 1929
BisI GCNGC 8 cut(s) 90, 220, 302, 524, 953, 1296, 1726, 1860
BlsI GCNGC 8 cut(s) 91, 221, 303, 525, 954, 1297, 1727, 1861
Bme1390I CCNGG 4 cut(s) 1152, 1289, 1546, 1795
Bme18I GGWCC 7 cut(s) 413, 485, 499, 557, 1370, 1600, 1751
BmeRI GACNNNNNGTC 1 cut(s) 1757
BmgT120I GGNCC 8 cut(s) 413, 485, 499, 557, 701, 1370, 1600, 1751
BmiI GGNNCC 2 cut(s) 1149, 1636
BmrFI CCNGG 4 cut(s) 1152, 1289, 1546, 1795
BmsI GCATC 5 cut(s) 185, 617, 1780, 1903, 1938
BpiI GAAGAC 2 cut(s) 1203, 1791
BpmI CTGGAG 2 cut(s) 31, 864
Bpu10I CCTNAGC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 1805
BpuEI CTTGAG 2 cut(s) 766, 1003
BpuMI CCSGG 1 cut(s) 1795
BsaI GGTCTC 2 cut(s) 1559, 1765
BsaJI CCNNGG 5 cut(s) 255, 495, 502, 1171, 1288
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 1055, 1461, 1739
Bse1I ACTGG 5 cut(s) 119, 416, 475, 559, 919
Bse3DI GCAATG 1 cut(s) 488
BseBI CCWGG 3 cut(s) 1152, 1289, 1546
BseDI CCNNGG 5 cut(s) 255, 495, 502, 1171, 1288
BseGI GGATG 5 cut(s) 1112, 1301, 1692, 1795, 1859
BseLI CCNNNNNNNGG 4 cut(s) 359, 1055, 1461, 1739
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 1 cut(s) 1776
BseNI ACTGG 5 cut(s) 119, 416, 475, 559, 919
BseXI GCAGC 8 cut(s) 76, 231, 313, 535, 939, 1282, 1712, 1846
BsgI GTGCAG 3 cut(s) 42, 139, 1207
BshFI GGCC 3 cut(s) 443, 703, 1473
BsiHKAI GWGCWC 2 cut(s) 9, 727
BsiSI CCGG 2 cut(s) 627, 1794
BslFI GGGAC 1 cut(s) 664
BslI CCNNNNNNNGG 4 cut(s) 359, 1055, 1461, 1739
BsmAI GTCTC 6 cut(s) 1170, 1172, 1559, 1658, 1765, 1789
BsmFI GGGAC 1 cut(s) 664
BsmI GAATGC 3 cut(s) 41, 345, 1728
BsnI GGCC 3 cut(s) 443, 703, 1473
Bso31I GGTCTC 2 cut(s) 1559, 1765
Bsp119I TTCGAA 1 cut(s) 1805
Bsp1286I GDGCHC 2 cut(s) 9, 727
Bsp1407I TGTACA 3 cut(s) 212, 531, 1428
Bsp143I GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
BspACI CCGC 2 cut(s) 339, 1331
BspANI GGCC 3 cut(s) 443, 703, 1473
BspCNI CTCAG 1 cut(s) 1775
BspLI GGNNCC 2 cut(s) 1149, 1636
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 1268, 1629, 1642
BspT104I TTCGAA 1 cut(s) 1805
BspTNI GGTCTC 2 cut(s) 1559, 1765
BsrDI GCAATG 1 cut(s) 488
BsrGI TGTACA 3 cut(s) 212, 531, 1428
BsrI ACTGG 5 cut(s) 119, 416, 475, 559, 919
BssECI CCNNGG 5 cut(s) 255, 495, 502, 1171, 1288
BssMI GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
BssT1I CCWWGG 4 cut(s) 255, 495, 502, 1171
Bst2UI CCWGG 3 cut(s) 1152, 1289, 1546
Bst4CI ACNGT 6 cut(s) 366, 642, 949, 1142, 1158, 1684
Bst6I CTCTTC 1 cut(s) 626
BstAPI GCANNNNNTGC 2 cut(s) 225, 1725
BstAUI TGTACA 3 cut(s) 212, 531, 1428
BstBI TTCGAA 1 cut(s) 1805
BstC8I GCNNGC 2 cut(s) 205, 341
BstDEI CTNAG 7 cut(s) 386, 391, 458, 646, 761, 1460, 1762
BstENI CCTNNNNNAGG 2 cut(s) 357, 1459
BstF5I GGATG 5 cut(s) 1112, 1301, 1692, 1795, 1859
BstH2I RGCGCY 1 cut(s) 1567
BstHHI GCGC 3 cut(s) 345, 1566, 1953
BstKTI GATC 7 cut(s) 274, 760, 1263, 1338, 1637, 1653, 1872
BstMAI GTCTC 6 cut(s) 1170, 1172, 1559, 1658, 1765, 1789
BstMBI GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
BstMWI GCNNNNNNNGC 5 cut(s) 173, 225, 301, 700, 1725
BstNI CCWGG 3 cut(s) 1152, 1289, 1546
BstNSI RCATGY 2 cut(s) 379, 1931
BstSCI CCNGG 4 cut(s) 1150, 1287, 1544, 1793
BstV1I GCAGC 8 cut(s) 76, 231, 313, 535, 939, 1282, 1712, 1846
BstV2I GAAGAC 2 cut(s) 1203, 1791
BstX2I RGATCY 1 cut(s) 1634
BstXI CCANNNNNNTGG 1 cut(s) 482
BstYI RGATCY 1 cut(s) 1634
BsuI GTATCC 1 cut(s) 1929
BsuRI GGCC 3 cut(s) 443, 703, 1473
BtsCI GGATG 5 cut(s) 1112, 1301, 1692, 1795, 1859
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 6 cut(s) 112, 156, 550, 1094, 1147, 1890
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 205, 341
CaiI CAGNNNCTG 1 cut(s) 225
CfoI GCGC 3 cut(s) 345, 1566, 1953
Cfr13I GGNCC 8 cut(s) 413, 485, 499, 557, 701, 1370, 1600, 1751
Csp6I GTAC 5 cut(s) 213, 532, 1110, 1429, 1465
CviAII CATG 5 cut(s) 171, 376, 814, 1772, 1928
CviQI GTAC 5 cut(s) 213, 532, 1110, 1429, 1465
DdeI CTNAG 7 cut(s) 386, 391, 458, 646, 761, 1460, 1762
DpnI GATC 7 cut(s) 273, 759, 1262, 1337, 1636, 1652, 1871
DpnII GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
DraIII CACNNNGTG 1 cut(s) 1185
DrdI GACNNNNNNGTC 1 cut(s) 1672
DriI GACNNNNNGTC 1 cut(s) 1757
DseDI GACNNNNNNGTC 1 cut(s) 1672
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 1 cut(s) 1757
EarI CTCTTC 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 4 cut(s) 255, 495, 502, 1171
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 2 cut(s) 1559, 1765
Eco47I GGWCC 7 cut(s) 413, 485, 499, 557, 1370, 1600, 1751
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 2 cut(s) 357, 1459
EcoRII CCWGG 3 cut(s) 1150, 1287, 1544
EcoT14I CCWWGG 4 cut(s) 255, 495, 502, 1171
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 4 cut(s) 255, 495, 502, 1171
FaeI CATG 5 cut(s) 174, 379, 817, 1775, 1931
FaqI GGGAC 1 cut(s) 664
FatI CATG 5 cut(s) 170, 375, 813, 1771, 1927
FauI CCCGC 1 cut(s) 332
FauNDI CATATG 1 cut(s) 1747
FbaI TGATCA 3 cut(s) 1335, 1650, 1869
FblI GTMKAC 2 cut(s) 835, 1578
Fnu4HI GCNGC 8 cut(s) 90, 220, 302, 524, 953, 1296, 1726, 1860
FokI GGATG 5 cut(s) 1099, 1288, 1679, 1802, 1866
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 8 cut(s) 90, 220, 302, 524, 953, 1296, 1726, 1860
FspBI CTAG 5 cut(s) 737, 890, 1031, 1317, 1475
FspI TGCGCA 1 cut(s) 1952
GlaI GCGC 3 cut(s) 344, 1565, 1952
GluI GCNGC 8 cut(s) 90, 220, 302, 524, 953, 1296, 1726, 1860
GsuI CTGGAG 2 cut(s) 31, 864
HaeII RGCGCY 1 cut(s) 1567
HaeIII GGCC 3 cut(s) 443, 703, 1473
HapII CCGG 2 cut(s) 627, 1794
HhaI GCGC 3 cut(s) 345, 1566, 1953
Hin1II CATG 5 cut(s) 174, 379, 817, 1775, 1931
Hin6I GCGC 3 cut(s) 343, 1564, 1951
HinP1I GCGC 3 cut(s) 343, 1564, 1951
HincII GTYRAC 2 cut(s) 836, 912
HindII GTYRAC 2 cut(s) 836, 912
HpaII CCGG 2 cut(s) 627, 1794
HphI GGTGA 7 cut(s) 230, 281, 616, 767, 1345, 1440, 1601
Hpy166II GTNNAC 5 cut(s) 400, 836, 912, 1016, 1579
Hpy188I TCNGA 9 cut(s) 327, 427, 613, 1138, 1282, 1423, 1559, 1620, 1789
Hpy8I GTNNAC 5 cut(s) 400, 836, 912, 1016, 1579
HpyAV CCTTC 9 cut(s) 602, 677, 1051, 1077, 1079, 1554, 1615, 1636, 1824
HpyCH4III ACNGT 6 cut(s) 366, 642, 949, 1142, 1158, 1684
HpyCH4IV ACGT 2 cut(s) 689, 1671
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 225, 301, 700, 1725
HpyF3I CTNAG 7 cut(s) 386, 391, 458, 646, 761, 1460, 1762
HpySE526I ACGT 2 cut(s) 689, 1671
Hsp92II CATG 5 cut(s) 174, 379, 817, 1775, 1931
HspAI GCGC 3 cut(s) 343, 1564, 1951
Ksp22I TGATCA 3 cut(s) 1335, 1650, 1869
Kzo9I GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
LmnI GCTCC 4 cut(s) 4, 571, 1292, 1423
Lsp1109I GCAGC 8 cut(s) 76, 231, 313, 535, 939, 1282, 1712, 1846
LweI GCATC 5 cut(s) 185, 617, 1780, 1903, 1938
MaeI CTAG 5 cut(s) 737, 890, 1031, 1317, 1475
MaeII ACGT 2 cut(s) 689, 1671
MaeIII GTNAC 1 cut(s) 550
MalI GATC 7 cut(s) 273, 759, 1262, 1337, 1636, 1652, 1871
MboI GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
MboII GAAGA 9 cut(s) 23, 256, 613, 768, 782, 1203, 1495, 1791, 1794
MflI RGATCY 1 cut(s) 1634
MhlI GDGCHC 2 cut(s) 9, 727
MlsI TGGCCA 1 cut(s) 443
MluNI TGGCCA 1 cut(s) 443
MlyI GAGTC 2 cut(s) 646, 1427
MmeI TCCRAC 2 cut(s) 396, 1401
MnlI CCTC 9 cut(s) 360, 526, 1226, 1383, 1465, 1525, 1764, 1809, 1926
Mox20I TGGCCA 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 871
MscI TGGCCA 1 cut(s) 443
MseI TTAA 4 cut(s) 335, 584, 1224, 1905
MslI CAYNNNNRTG 2 cut(s) 1685, 1852
Msp20I TGGCCA 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 2 cut(s) 627, 1794
MspR9I CCNGG 4 cut(s) 1152, 1289, 1546, 1795
Mva1269I GAATGC 3 cut(s) 41, 345, 1728
MvaI CCWGG 3 cut(s) 1152, 1289, 1546
MwoI GCNNNNNNNGC 5 cut(s) 173, 225, 301, 700, 1725
NciI CCSGG 1 cut(s) 1795
NdeI CATATG 1 cut(s) 1747
NdeII GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
NlaIII CATG 5 cut(s) 174, 379, 817, 1775, 1931
NlaIV GGNNCC 2 cut(s) 1149, 1636
NsbI TGCGCA 1 cut(s) 1952
NspI RCATGY 2 cut(s) 379, 1931
NspV TTCGAA 1 cut(s) 1805
PaqCI CACCTGC 1 cut(s) 233
PciI ACATGT 1 cut(s) 1927
PcsI WCGNNNNNNNCGW 1 cut(s) 1668
PctI GAATGC 3 cut(s) 41, 345, 1728
PdmI GAANNNNTTC 1 cut(s) 871
PfeI GAWTC 8 cut(s) 136, 190, 316, 773, 900, 1277, 1394, 1443
PflMI CCANNNNNTGG 1 cut(s) 1055
PfoI TCCNGGA 1 cut(s) 1544
PkrI GCNGC 8 cut(s) 91, 221, 303, 525, 954, 1297, 1727, 1861
PleI GAGTC 2 cut(s) 646, 1426
PpsI GAGTC 2 cut(s) 646, 1426
PscI ACATGT 1 cut(s) 1927
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 1150, 1287, 1544
PspGI CCWGG 3 cut(s) 1150, 1287, 1544
PspN4I GGNNCC 2 cut(s) 1149, 1636
PspPI GGNCC 8 cut(s) 413, 485, 499, 557, 701, 1370, 1600, 1751
PstNI CAGNNNCTG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 1634
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 5 cut(s) 214, 533, 1111, 1430, 1466
RsaNI GTAC 5 cut(s) 213, 532, 1110, 1429, 1465
RseI CAYNNNNRTG 2 cut(s) 1685, 1852
SacI GAGCTC 1 cut(s) 9
SalI GTCGAC 1 cut(s) 834
SaqAI TTAA 4 cut(s) 335, 584, 1224, 1905
SatI GCNGC 8 cut(s) 90, 220, 302, 524, 953, 1296, 1726, 1860
Sau3AI GATC 7 cut(s) 271, 757, 1260, 1335, 1634, 1650, 1869
Sau96I GGNCC 8 cut(s) 413, 485, 499, 557, 701, 1370, 1600, 1751
SchI GAGTC 2 cut(s) 646, 1427
ScrFI CCNGG 4 cut(s) 1152, 1289, 1546, 1795
SduI GDGCHC 2 cut(s) 9, 727
SfaNI GCATC 5 cut(s) 185, 617, 1780, 1903, 1938
SfuI TTCGAA 1 cut(s) 1805
SinI GGWCC 7 cut(s) 413, 485, 499, 557, 1370, 1600, 1751
SmiMI CAYNNNNRTG 2 cut(s) 1685, 1852
SmlI CTYRAG 2 cut(s) 745, 982
SmoI CTYRAG 2 cut(s) 745, 982
SsiI CCGC 2 cut(s) 339, 1331
SspMI CTAG 5 cut(s) 737, 890, 1031, 1317, 1475
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 4 cut(s) 1150, 1287, 1544, 1793
StyI CCWWGG 4 cut(s) 255, 495, 502, 1171
TaaI ACNGT 6 cut(s) 366, 642, 949, 1142, 1158, 1684
TaiI ACGT 2 cut(s) 692, 1674
TaqI TCGA 4 cut(s) 835, 1263, 1662, 1805
TatI WGTACW 3 cut(s) 212, 531, 1428
TfiI GAWTC 8 cut(s) 136, 190, 316, 773, 900, 1277, 1394, 1443
Tru1I TTAA 4 cut(s) 335, 584, 1224, 1905
Tru9I TTAA 4 cut(s) 335, 584, 1224, 1905
TscAI CASTG 6 cut(s) 119, 163, 550, 1101, 1147, 1890
TseI GCWGC 8 cut(s) 89, 219, 301, 523, 952, 1295, 1725, 1859
TspDTI ATGAA 3 cut(s) 96, 1203, 1290
TspGWI ACGGA 3 cut(s) 1383, 1421, 1503
TspRI CASTG 6 cut(s) 119, 163, 550, 1101, 1147, 1890
Van91I CCANNNNNTGG 1 cut(s) 1055
VpaK11BI GGWCC 7 cut(s) 413, 485, 499, 557, 1370, 1600, 1751
XagI CCTNNNNNAGG 2 cut(s) 357, 1459
XapI RAATTY 3 cut(s) 849, 1072, 1540
XbaI TCTAGA 1 cut(s) 1316
XceI RCATGY 2 cut(s) 379, 1931
XmiI GTMKAC 2 cut(s) 835, 1578
XmnI GAANNNNTTC 1 cut(s) 871
XspI CTAG 5 cut(s) 737, 890, 1031, 1317, 1475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.