Rroxscaffold_7G00170160

AUX/IAA family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
10600883 .. 10604689
3807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00170160.1

Sequence Viewer

Length: 1428 bp
ATGCTCATTTCTTACTTTTCCTTCCCAGTTACTGCTCTCAACAAGGTACTAGAACACTGGAGCTTGGTAAATCACTTGAATCTTACCATTGACCCCTGCACTGAAAATGCCACATGGGCATCTGGAACTGCGAATCCCCGTGTGGCTTGCGATTGTACAGGCAGCGCTTGCCATATTACTCACCTGAAGCTATATGCCTTGGACATAATTGGTGATCTACCAGGAGAACTATTTGAGCTAAAGCAGCTAATAGACTTGAATCTTGGTCAGAATGTATTAAGCGGGCGCATTCCTCCTGAAATCGGACTGTTATCCAACATGCAGTACCTTAGCTTAGGCGTAAACAATCTGTCAGGTCCGGTTCCATCAGAGCTTGGCAAGTTGACCAAGTTGGTTGAGCTAAGTTTTAGCTCAAACCAGTTCTCTGGACCATTGCCCTTGGACCTTGGAAAACTGACTTCCTTGCAGCAGTTGTACATAGACAGCAGTGGAGTGACTGGACCAATTCCACTGGAGCTTTCAAACTTAAAATCCCTTCAAACTTTGCGACTTGAAGGCACATTGCTTGACGGACCAATTCCAAGCAACTTTGGTGCTCTAACCAAACTAGACATCTTGAGAATTGGTGATCTTAGCAAGGAAGATTCTTCTCTCGATTTTTTGGAAAATCTAACAACTTCATTTTCTATTAAATGTGGAGGCACAAGCCAGAAATCTGTATCTGGGATCGAATACGATGATGATTCTGAAATCCTGGGAGCTGCTTCATCCTACAAAAGCTCTAGAAATCAATGGGCGGTGAGCAACACAGGGAACTTCCTTTTCAACTCAAACGGACCTCAATACACAGCAAACACAGATTCTCAAATCACGGAAACATTAGAGTCGGAGCTGTACAAGACAGCAAGAATCTCACCAACCTCACTTAGGTACTATGGCCTAGATTTGAAGAACGGAAACTATGTCGTTGAGCTTCACTTTGCAGAGTTGCAAATGGAGGAAACAAATTCCTGGAAAGGTCTCGGAAGGCGCTTGTTTGATGTCTACATTCAGGGTGAGAGAGTGGTCCAAGACTTGAACATTCAGAAGGAAGCAGGGGGATCCAAGAAGGCATTGATCAAAACATTCGAGACAAACGTGTCAAACACAATTATGGACATCCATTTCCTGTGGGCTGGAAAAGGCACTTGCTGCATTCCATATCAAGGCACATATGGACCTCTGGTCTCAGCAATCCATGTTTATCAAGTCTCGGATGCCGGGTCTTCTTCGAAAAGCGAGAGGAAGCATGTGGGAAGGATTGTGGGAGTGGCATTTGGATGTGCAGCTGTTATGATCATAATGTCATCAGTGTTCTACCTATGGTGGATTAAAGATGATGCTGAACCCAGACATGTGAGGATACATAGAGAGATGCGCAAGAAATGA

Protein Analysis

475

Amino Acids

52.23

Weight (kDa)

5.74

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 53 - 162 1.6e-08 Leucine-rich repeat region
LRR_14 PF23598 148 - 225 4.5e-06 Leucine-rich repeat region
Malectin PF11721 227 - 412 3.2e-42 Malectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018383)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g28980 FvH4_2g28980
prunus_persica Prupe.1G481600_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0297831
rosa_laevigata RLG00000011557
rosa_multiflora Rmu_sc0003137.1_g000013
rosa_roxburghii Rroxscaffold_7G00170160 Rroxscaffold_7G00179010
rosa_rugosa Rorug06G0275800
rosa_samantha Rh6CG400800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1138
Acc16I TGCGCA 1 cut(s) 1418
AccI GTMKAC 1 cut(s) 1044
AciI CCGC 2 cut(s) 282, 797
AclWI GGATC 3 cut(s) 734, 1095, 1108
AcsI RAATTY 1 cut(s) 1006
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 6 cut(s) 48, 157, 326, 476, 896, 932
AfeI AGCGCT 1 cut(s) 166
AfiI CCNNNNNNNGG 3 cut(s) 302, 927, 1205
AflIII ACRYGT 2 cut(s) 1137, 1393
AgsI TTSAA 8 cut(s) 79, 259, 522, 539, 554, 826, 949, 1078
AhdI GACNNNNNGTC 1 cut(s) 1223
AjnI CCWGG 3 cut(s) 220, 753, 1010
AloI GAACNNNNNNTCC 2 cut(s) 118, 150
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 4 cut(s) 1025, 1124, 1231, 1255
AlwI GGATC 3 cut(s) 734, 1095, 1108
AlwNI CAGNNNCTG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 166
AoxI GGCC 1 cut(s) 937
ApeKI GCWGC 6 cut(s) 162, 244, 466, 761, 1191, 1325
ApoI RAATTY 1 cut(s) 1006
AspLEI GCGC 4 cut(s) 167, 288, 1032, 1419
AspS9I GGNCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
AsuC2I CCSGG 1 cut(s) 1261
AsuHPI GGTGA 6 cut(s) 173, 224, 638, 811, 906, 1067
AsuII TTCGAA 1 cut(s) 1271
AvaII GGWCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
BamHI GGATCC 1 cut(s) 1100
BbsI GAAGAC 1 cut(s) 1257
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 6 cut(s) 174, 256, 478, 748, 1178, 1337
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 3 cut(s) 222, 755, 1012
BciVI GTATCC 1 cut(s) 1395
BclI TGATCA 2 cut(s) 1116, 1335
BcnI CCSGG 1 cut(s) 1261
BcoDI GTCTC 4 cut(s) 1025, 1124, 1231, 1255
BfaI CTAG 4 cut(s) 50, 608, 783, 941
BfoI RGCGCY 2 cut(s) 168, 1033
BfuI GTATCC 1 cut(s) 1395
BglI GCCNNNNNGGC 1 cut(s) 116
BisI GCNGC 6 cut(s) 163, 245, 467, 762, 1192, 1326
BlsI GCNGC 6 cut(s) 164, 246, 468, 763, 1193, 1327
Bme1390I CCNGG 4 cut(s) 222, 755, 1012, 1261
Bme18I GGWCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
BmeRI GACNNNNNGTC 1 cut(s) 1223
BmgT120I GGNCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
BmiI GGNNCC 2 cut(s) 363, 1102
BmrFI CCNGG 4 cut(s) 222, 755, 1012, 1261
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 4 cut(s) 128, 1246, 1369, 1404
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 1257
BpmI CTGGAG 2 cut(s) 79, 533
Bpu10I CCTNAGC 2 cut(s) 329, 334
Bpu14I TTCGAA 1 cut(s) 1271
BpuEI CTTGAG 1 cut(s) 637
BpuMI CCSGG 1 cut(s) 1261
BsaI GGTCTC 2 cut(s) 1025, 1231
BsaJI CCNNGG 4 cut(s) 198, 438, 445, 754
BsaWI WCCGGW 1 cut(s) 358
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 927, 1205
Bse1I ACTGG 5 cut(s) 26, 62, 418, 502, 516
Bse3DI GCAATG 2 cut(s) 431, 560
BseBI CCWGG 3 cut(s) 222, 755, 1012
BseDI CCNNGG 4 cut(s) 198, 438, 445, 754
BseGI GGATG 4 cut(s) 767, 1158, 1261, 1325
BseLI CCNNNNNNNGG 3 cut(s) 302, 927, 1205
BseMI GCAATG 2 cut(s) 431, 560
BseMII CTCAG 1 cut(s) 1242
BseNI ACTGG 5 cut(s) 26, 62, 418, 502, 516
BseXI GCAGC 6 cut(s) 174, 256, 478, 748, 1178, 1337
BsgI GTGCAG 2 cut(s) 82, 1344
BshFI GGCC 1 cut(s) 939
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 2 cut(s) 359, 1260
BslI CCNNNNNNNGG 3 cut(s) 302, 927, 1205
BsmAI GTCTC 4 cut(s) 1025, 1124, 1231, 1255
BsmI GAATGC 2 cut(s) 288, 1194
BsnI GGCC 1 cut(s) 939
Bso31I GGTCTC 2 cut(s) 1025, 1231
Bsp119I TTCGAA 1 cut(s) 1271
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 3 cut(s) 155, 474, 894
Bsp143I GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
BspACI CCGC 2 cut(s) 282, 797
BspANI GGCC 1 cut(s) 939
BspCNI CTCAG 1 cut(s) 1241
BspLI GGNNCC 2 cut(s) 363, 1102
BspPI GGATC 3 cut(s) 734, 1095, 1108
BspT104I TTCGAA 1 cut(s) 1271
BspTNI GGTCTC 2 cut(s) 1025, 1231
BsrDI GCAATG 2 cut(s) 431, 560
BsrGI TGTACA 3 cut(s) 155, 474, 894
BsrI ACTGG 5 cut(s) 26, 62, 418, 502, 516
BssECI CCNNGG 4 cut(s) 198, 438, 445, 754
BssMI GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
BssT1I CCWWGG 3 cut(s) 198, 438, 445
Bst2UI CCWGG 3 cut(s) 222, 755, 1012
Bst4CI ACNGT 1 cut(s) 309
BstAPI GCANNNNNTGC 2 cut(s) 168, 1191
BstAUI TGTACA 3 cut(s) 155, 474, 894
BstBI TTCGAA 1 cut(s) 1271
BstC8I GCNNGC 3 cut(s) 148, 169, 284
BstDEI CTNAG 6 cut(s) 329, 334, 401, 632, 926, 1228
BstENI CCTNNNNNAGG 1 cut(s) 925
BstF5I GGATG 4 cut(s) 767, 1158, 1261, 1325
BstH2I RGCGCY 2 cut(s) 168, 1033
BstHHI GCGC 4 cut(s) 167, 288, 1032, 1419
BstKTI GATC 6 cut(s) 217, 631, 729, 1103, 1119, 1338
BstMAI GTCTC 4 cut(s) 1025, 1124, 1231, 1255
BstMBI GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
BstMWI GCNNNNNNNGC 4 cut(s) 116, 168, 244, 1191
BstNI CCWGG 3 cut(s) 222, 755, 1012
BstNSI RCATGY 3 cut(s) 322, 1292, 1397
BstSCI CCNGG 4 cut(s) 220, 753, 1010, 1259
BstV1I GCAGC 6 cut(s) 174, 256, 478, 748, 1178, 1337
BstV2I GAAGAC 1 cut(s) 1257
BstX2I RGATCY 1 cut(s) 1100
BstXI CCANNNNNNTGG 1 cut(s) 425
BstYI RGATCY 1 cut(s) 1100
BsuI GTATCC 1 cut(s) 1395
BsuRI GGCC 1 cut(s) 939
BtsCI GGATG 4 cut(s) 767, 1158, 1261, 1325
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 5 cut(s) 55, 99, 493, 509, 1356
Cac8I GCNNGC 3 cut(s) 148, 169, 284
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 4 cut(s) 167, 288, 1032, 1419
Cfr13I GGNCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
Csp6I GTAC 6 cut(s) 47, 156, 325, 475, 895, 931
CviAII CATG 5 cut(s) 114, 319, 1238, 1289, 1394
CviQI GTAC 6 cut(s) 47, 156, 325, 475, 895, 931
DdeI CTNAG 6 cut(s) 329, 334, 401, 632, 926, 1228
DpnI GATC 6 cut(s) 216, 630, 728, 1102, 1118, 1337
DpnII GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
DrdI GACNNNNNNGTC 1 cut(s) 1138
DriI GACNNNNNGTC 1 cut(s) 1223
DseDI GACNNNNNNGTC 1 cut(s) 1138
Eam1105I GACNNNNNGTC 1 cut(s) 1223
Eco130I CCWWGG 3 cut(s) 198, 438, 445
Eco31I GGTCTC 2 cut(s) 1025, 1231
Eco47I GGWCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
Eco47III AGCGCT 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 925
EcoRII CCWGG 3 cut(s) 220, 753, 1010
EcoT14I CCWWGG 3 cut(s) 198, 438, 445
ErhI CCWWGG 3 cut(s) 198, 438, 445
FaeI CATG 5 cut(s) 117, 322, 1241, 1292, 1397
FatI CATG 5 cut(s) 113, 318, 1237, 1288, 1393
FauI CCCGC 1 cut(s) 275
FauNDI CATATG 1 cut(s) 1213
FbaI TGATCA 2 cut(s) 1116, 1335
FblI GTMKAC 1 cut(s) 1044
Fnu4HI GCNGC 6 cut(s) 163, 245, 467, 762, 1192, 1326
FokI GGATG 4 cut(s) 754, 1145, 1268, 1332
Fsp4HI GCNGC 6 cut(s) 163, 245, 467, 762, 1192, 1326
FspBI CTAG 4 cut(s) 50, 608, 783, 941
FspI TGCGCA 1 cut(s) 1418
GlaI GCGC 4 cut(s) 166, 287, 1031, 1418
GluI GCNGC 6 cut(s) 163, 245, 467, 762, 1192, 1326
GsuI CTGGAG 2 cut(s) 79, 533
HaeII RGCGCY 2 cut(s) 168, 1033
HaeIII GGCC 1 cut(s) 939
HapII CCGG 2 cut(s) 359, 1260
HhaI GCGC 4 cut(s) 167, 288, 1032, 1419
Hin1II CATG 5 cut(s) 117, 322, 1241, 1292, 1397
Hin6I GCGC 4 cut(s) 165, 286, 1030, 1417
HinP1I GCGC 4 cut(s) 165, 286, 1030, 1417
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 8 cut(s) 79, 133, 259, 644, 743, 860, 884, 909
HpaII CCGG 2 cut(s) 359, 1260
HphI GGTGA 6 cut(s) 173, 224, 638, 811, 906, 1067
Hpy166II GTNNAC 3 cut(s) 343, 384, 1045
Hpy188I TCNGA 8 cut(s) 270, 305, 370, 748, 889, 1025, 1086, 1255
Hpy188III TCNNGA 7 cut(s) 123, 296, 426, 616, 653, 783, 1129
Hpy8I GTNNAC 3 cut(s) 343, 384, 1045
HpyAV CCTTC 7 cut(s) 31, 545, 548, 1020, 1081, 1102, 1290
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 1137
HpyCH4V TGCA 7 cut(s) 99, 322, 466, 983, 991, 1194, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 168, 244, 1191
HpyF3I CTNAG 6 cut(s) 329, 334, 401, 632, 926, 1228
HpySE526I ACGT 1 cut(s) 1137
Hsp92II CATG 5 cut(s) 117, 322, 1241, 1292, 1397
HspAI GCGC 4 cut(s) 165, 286, 1030, 1417
Ksp22I TGATCA 2 cut(s) 1116, 1335
Kzo9I GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
LmnI GCTCC 4 cut(s) 60, 514, 758, 889
Lsp1109I GCAGC 6 cut(s) 174, 256, 478, 748, 1178, 1337
LweI GCATC 4 cut(s) 128, 1246, 1369, 1404
MaeI CTAG 4 cut(s) 50, 608, 783, 941
MaeII ACGT 1 cut(s) 1137
MaeIII GTNAC 2 cut(s) 28, 493
MalI GATC 6 cut(s) 216, 630, 728, 1102, 1118, 1337
MboI GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
MboII GAAGA 5 cut(s) 639, 653, 961, 1257, 1260
MflI RGATCY 1 cut(s) 1100
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 6 cut(s) 207, 504, 576, 621, 1006, 1149
MlyI GAGTC 1 cut(s) 893
MmeI TCCRAC 2 cut(s) 339, 867
MnlI CCTC 8 cut(s) 303, 692, 849, 931, 991, 1230, 1275, 1392
MseI TTAA 4 cut(s) 278, 527, 690, 1371
MslI CAYNNNNRTG 2 cut(s) 1151, 1318
MspA1I CMGCKG 1 cut(s) 1328
MspI CCGG 2 cut(s) 359, 1260
MspR9I CCNGG 4 cut(s) 222, 755, 1012, 1261
Mva1269I GAATGC 2 cut(s) 288, 1194
MvaI CCWGG 3 cut(s) 222, 755, 1012
MwoI GCNNNNNNNGC 4 cut(s) 116, 168, 244, 1191
NciI CCSGG 1 cut(s) 1261
NdeI CATATG 1 cut(s) 1213
NdeII GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
NlaIII CATG 5 cut(s) 117, 322, 1241, 1292, 1397
NlaIV GGNNCC 2 cut(s) 363, 1102
NmuCI GTSAC 1 cut(s) 493
NsbI TGCGCA 1 cut(s) 1418
NspI RCATGY 3 cut(s) 322, 1292, 1397
NspV TTCGAA 1 cut(s) 1271
PciI ACATGT 1 cut(s) 1393
PcsI WCGNNNNNNNCGW 1 cut(s) 1134
PctI GAATGC 2 cut(s) 288, 1194
PfeI GAWTC 7 cut(s) 79, 133, 259, 644, 743, 860, 909
PfoI TCCNGGA 1 cut(s) 1010
PkrI GCNGC 6 cut(s) 164, 246, 468, 763, 1193, 1327
PleI GAGTC 1 cut(s) 892
PpsI GAGTC 1 cut(s) 892
PscI ACATGT 1 cut(s) 1393
Psp6I CCWGG 3 cut(s) 220, 753, 1010
PspGI CCWGG 3 cut(s) 220, 753, 1010
PspN4I GGNNCC 2 cut(s) 363, 1102
PspPI GGNCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 1100
PvuII CAGCTG 1 cut(s) 1328
RsaI GTAC 6 cut(s) 48, 157, 326, 476, 896, 932
RsaNI GTAC 6 cut(s) 47, 156, 325, 475, 895, 931
RseI CAYNNNNRTG 2 cut(s) 1151, 1318
SaqAI TTAA 4 cut(s) 278, 527, 690, 1371
SatI GCNGC 6 cut(s) 163, 245, 467, 762, 1192, 1326
Sau3AI GATC 6 cut(s) 214, 628, 726, 1100, 1116, 1335
Sau96I GGNCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 4 cut(s) 222, 755, 1012, 1261
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 4 cut(s) 128, 1246, 1369, 1404
SfuI TTCGAA 1 cut(s) 1271
SinI GGWCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
SmiMI CAYNNNNRTG 2 cut(s) 1151, 1318
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 6 cut(s) 207, 504, 576, 621, 1006, 1149
SsiI CCGC 2 cut(s) 282, 797
SspMI CTAG 4 cut(s) 50, 608, 783, 941
StyD4I CCNGG 4 cut(s) 220, 753, 1010, 1259
StyI CCWWGG 3 cut(s) 198, 438, 445
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 1 cut(s) 1140
TaqI TCGA 4 cut(s) 654, 729, 1128, 1271
TasI AATT 6 cut(s) 207, 504, 576, 621, 1006, 1149
TatI WGTACW 3 cut(s) 155, 474, 894
TfiI GAWTC 7 cut(s) 79, 133, 259, 644, 743, 860, 909
Tru1I TTAA 4 cut(s) 278, 527, 690, 1371
Tru9I TTAA 4 cut(s) 278, 527, 690, 1371
TscAI CASTG 5 cut(s) 62, 106, 493, 516, 1356
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 6 cut(s) 162, 244, 466, 761, 1191, 1325
Tsp45I GTSAC 1 cut(s) 493
TspDTI ATGAA 2 cut(s) 669, 756
TspGWI ACGGA 4 cut(s) 585, 849, 887, 969
TspRI CASTG 5 cut(s) 62, 106, 493, 516, 1356
VpaK11BI GGWCC 8 cut(s) 356, 428, 442, 500, 572, 836, 1066, 1217
XagI CCTNNNNNAGG 1 cut(s) 925
XapI RAATTY 1 cut(s) 1006
XbaI TCTAGA 1 cut(s) 782
XceI RCATGY 3 cut(s) 322, 1292, 1397
XmiI GTMKAC 1 cut(s) 1044
XspI CTAG 4 cut(s) 50, 608, 783, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.