Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003180.1

Orthogroup ID

OG0017713

Physical Location & Seq

Genomic Coordinates Reverse (-)

34918 .. 36413

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003180.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcctttatgctttcgcctggggtctcgcgaatcgttactattgtattgagggtcctggctgccattgttctgtttgtatcactcgtgatgctcgtcgccaataatcaggattatccagaccctagtgacaacggaaacactaaaaccgctcgtttttatgatcaagttggattccaatacatggccgccacaacagctctcggaattgggttttcaatctatggaaccgttgttgtagctttgcgcatcaagagaggaaatgatgaagggaacctgttgattgatttctatggccagaagaatctcgtgacttcacctgaattcggtcaccggattccaattacctaccgccacccaccagactttctaaaaacctcgccagatgtccccaaagagatcgtcggagatttcataggtcgccggaactttgcccacaatagcagtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

150

Amino Acids

16.58

Weight (kDa)

9.0

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017713)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22230
rosa_chinensis	RchiOBHm_Chr1g0366621
rosa_laevigata	RLG00000027332
rosa_multiflora	Rmu_sc0003180.1_g000008
rosa_roxburghii	Rroxscaffold_4G00289810
rosa_rugosa	Rorug01G0330900 Rorug01G0331000
rosa_samantha	Rh1AG339300 Rh1BG301000 Rh1CG315800 Rh1DG332600
rosa_wichuraiana	Rw1G030050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccBSI	CCGCTC	1 cut(s)	152
AccII	CGCG	1 cut(s)	31
AciI	CCGC	3 cut(s)	150, 189, 352
AcoI	YGGCCR	2 cut(s)	186, 295
AcsI	RAATTY	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	184, 326
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	19, 57
AluBI	AGCT	2 cut(s)	200, 242
AluI	AGCT	2 cut(s)	200, 242
Alw26I	GTCTC	1 cut(s)	31
AoxI	GGCC	3 cut(s)	3, 186, 295
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	323
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	309, 323
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	297
BauI	CACGAG	2 cut(s)	86, 308
BbvI	GCAGC	1 cut(s)	49
BciT130I	CCWGG	2 cut(s)	21, 59
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	126
BisI	GCNGC	2 cut(s)	63, 189
BlsI	GCNGC	2 cut(s)	64, 190
Bme1390I	CCNGG	2 cut(s)	21, 59
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	3 cut(s)	56, 229, 275
BmrFI	CCNGG	2 cut(s)	21, 59
BmsI	GCATC	2 cut(s)	81, 258
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 326
BseBI	CCWGG	2 cut(s)	21, 59
BseDI	CCNNGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	2 cut(s)	184, 326
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	5, 188, 297
BsiSI	CCGG	2 cut(s)	334, 424
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	184, 326
BsmAI	GTCTC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	5, 188, 297
Bso31I	GGTCTC	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	163, 399
Bsp68I	TCGCGA	1 cut(s)	31
BspACI	CCGC	3 cut(s)	150, 189, 352
BspANI	GGCC	3 cut(s)	5, 188, 297
BspFNI	CGCG	1 cut(s)	31
BspLI	GGNNCC	3 cut(s)	56, 229, 275
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	163, 399
BssSI	CACGAG	2 cut(s)	86, 308
Bst2BI	CACGAG	2 cut(s)	86, 308
Bst2UI	CCWGG	2 cut(s)	21, 59
Bst4CI	ACNGT	1 cut(s)	232
BstEII	GGTNACC	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	2 cut(s)	166, 402
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	163, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	2 cut(s)	21, 59
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	19, 57
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	49
BsuRI	GGCC	3 cut(s)	5, 188, 297
BtuMI	TCGCGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	55
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	6 cut(s)	5, 62, 188, 200, 242, 297
CviKI_1	RGCY	6 cut(s)	5, 62, 188, 200, 242, 297
DpnI	GATC	2 cut(s)	165, 401
DpnII	GATC	2 cut(s)	163, 399
EaeI	YGGCCR	2 cut(s)	186, 295
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	55
Eco91I	GGTNACC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	19, 57
FaeI	CATG	1 cut(s)	187
FaiI	YATR	7 cut(s)	11, 162, 185, 225, 294, 416, 451
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	63, 189
Fsp4HI	GCNGC	2 cut(s)	63, 189
FspBI	CTAG	1 cut(s)	126
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	2 cut(s)	63, 189
HaeIII	GGCC	3 cut(s)	5, 188, 297
HapII	CCGG	2 cut(s)	334, 424
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HinfI	GANTC	4 cut(s)	33, 174, 304, 337
HpaII	CCGG	2 cut(s)	334, 424
HphI	GGTGA	2 cut(s)	309, 323
Hpy188I	TCNGA	2 cut(s)	206, 407
Hpy188III	TCNNGA	6 cut(s)	30, 88, 110, 119, 253, 310
Hpy99I	CGWCG	2 cut(s)	101, 407
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 399
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	81, 258
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	4 cut(s)	37, 128, 310, 329
MalI	GATC	2 cut(s)	165, 401
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	163, 399
MboII	GAAGA	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	207, 323, 342
MluNI	TGGCCA	1 cut(s)	297
MmeI	TCCRAC	2 cut(s)	151, 385
MnlI	CCTC	3 cut(s)	45, 251, 388
Mox20I	TGGCCA	1 cut(s)	297
MscI	TGGCCA	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	2 cut(s)	334, 424
MspR9I	CCNGG	2 cut(s)	21, 59
MvaI	CCWGG	2 cut(s)	21, 59
MvnI	CGCG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	163, 399
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	3 cut(s)	56, 229, 275
NmuCI	GTSAC	3 cut(s)	128, 310, 329
NruI	TCGCGA	1 cut(s)	31
NsbI	TGCGCA	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PfeI	GAWTC	4 cut(s)	33, 174, 304, 337
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	64, 190
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	19, 57
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	19, 57
PspN4I	GGNNCC	3 cut(s)	56, 229, 275
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
RruI	TCGCGA	1 cut(s)	31
SatI	GCNGC	2 cut(s)	63, 189
Sau3AI	GATC	2 cut(s)	163, 399
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	21, 59
SetI	ASST	7 cut(s)	202, 244, 279, 322, 350, 380, 421
SfaNI	GCATC	2 cut(s)	81, 258
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	3 cut(s)	207, 323, 342
SsiI	CCGC	3 cut(s)	150, 189, 352
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	19, 57
TaaI	ACNGT	1 cut(s)	232
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	3 cut(s)	207, 323, 342
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	33, 174, 304, 337
TseFI	GTSAC	3 cut(s)	128, 310, 329
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	3 cut(s)	128, 310, 329
TspDTI	ATGAA	2 cut(s)	282, 403
TspGWI	ACGGA	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.