Rmu_sc0003588.1_g000004

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003588.1
OG0020737
Physical Location & Seq
Forward (+)
13420 .. 14611
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003588.1_g000004.1.cds

Sequence Viewer

Length: 579 bp
atgaacccgcaaatgttgttggataataccattgggaatatcgttttgttggctcctgtggtattagaaatcttggaagagacaacaacaaatagtagtgatcaagaactgtgtgacttggtgaacttgcttcatgaatccctcaaccaatataacagtgagtacctggacactccgaagggtaaagaaggatttggagccatttgtgactatctagatttcatggaggaagggacttttatgaaaccaccaccagagatttatacattcacgagctggactagaattcttaacaaactggattttggatggggaaagccatttcagattggagtcatcggaaaagttggacccgtgtttggaaatctaactatatttgttgcattacaatgcgatcaacaaattgaagcgcagaacaagaagcttatgcatcatgctcagcttgcacaggtcaggcagccccagctgttcgagcagatccagcagcaggagcagcctagagatggaaatgtggggttgctctatcttctgtccagttatgaacggatgctgtatgtaattggcggactaggaatatga

Protein Analysis

192

Amino Acids

21.73

Weight (kDa)

4.58

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020737)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003588.1_g000004
rosa_samantha Rh1AG242700 Rh1BG213900 Rh1CG226500 Rh1CG226900
rosa_wichuraiana Rw1G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 564
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 359, 487, 503
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 4 cut(s) 276, 424, 442, 466
AluI AGCT 4 cut(s) 276, 424, 442, 466
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 472
ApeKI GCWGC 3 cut(s) 457, 484, 493
ApoI RAATTY 1 cut(s) 285
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 133
AvaII GGWCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 271
BbvI GCAGC 3 cut(s) 469, 496, 505
BccI CCATC 2 cut(s) 303, 497
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 4 cut(s) 215, 282, 498, 569
BisI GCNGC 3 cut(s) 458, 485, 494
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 3 cut(s) 459, 486, 495
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 54, 199, 352
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 439, 537
Bpu1102I GCTNAGC 1 cut(s) 438
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 487, 503
Bse1I ACTGG 2 cut(s) 303, 534
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 314, 552
BseLI CCNNNNNNNGG 3 cut(s) 359, 487, 503
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 2 cut(s) 303, 534
BseXI GCAGC 3 cut(s) 469, 496, 505
BseYI CCCAGC 1 cut(s) 462
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 359, 487, 503
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 3 cut(s) 100, 394, 477
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 2 cut(s) 8, 564
BspCNI CTCAG 1 cut(s) 451
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 3 cut(s) 54, 199, 352
BspPI GGATC 1 cut(s) 472
BsrI ACTGG 2 cut(s) 303, 534
BssMI GATC 3 cut(s) 100, 394, 477
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 111, 158
Bst6I CTCTTC 1 cut(s) 72
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 438
BstF5I GGATG 2 cut(s) 314, 552
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 3 cut(s) 103, 397, 480
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 100, 394, 477
BstMWI GCNNNNNNNGC 6 cut(s) 443, 463, 472, 481, 490, 493
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 469, 496, 505
BstX2I RGATCY 1 cut(s) 477
BstYI RGATCY 1 cut(s) 477
BtsCI GGATG 2 cut(s) 314, 552
BtsIMutI CAGTG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 444
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 134, 223, 434
CviJI RGCY 9 cut(s) 53, 200, 276, 319, 424, 442, 460, 466, 496
CviKI_1 RGCY 9 cut(s) 53, 200, 276, 319, 424, 442, 460, 466, 496
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 438
DpnI GATC 3 cut(s) 102, 396, 479
DpnII GATC 3 cut(s) 100, 394, 477
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EciI GGCGGA 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 432
FaeI CATG 3 cut(s) 137, 226, 437
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 133, 222, 433
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 458, 485, 494
FokI GGATG 2 cut(s) 321, 559
Fsp4HI GCNGC 3 cut(s) 458, 485, 494
FspBI CTAG 4 cut(s) 215, 282, 498, 569
GlaI GCGC 1 cut(s) 411
GluI GCNGC 3 cut(s) 458, 485, 494
GsaI CCCAGC 1 cut(s) 466
HhaI GCGC 1 cut(s) 412
Hin1II CATG 3 cut(s) 137, 226, 437
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 2 cut(s) 137, 333
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 177, 327, 341
Hpy188III TCNNGA 4 cut(s) 104, 134, 215, 271
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 172, 182, 224
HpyCH4III ACNGT 2 cut(s) 111, 158
HpyCH4V TGCA 3 cut(s) 383, 430, 446
HpyF10VI GCNNNNNNNGC 6 cut(s) 443, 463, 472, 481, 490, 493
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 3 cut(s) 137, 226, 437
HspAI GCGC 1 cut(s) 410
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 3 cut(s) 100, 394, 477
LmnI GCTCC 3 cut(s) 58, 197, 490
Lsp1109I GCAGC 3 cut(s) 469, 496, 505
LweI GCATC 2 cut(s) 439, 537
MaeI CTAG 4 cut(s) 215, 282, 498, 569
MaeIII GTNAC 2 cut(s) 113, 206
MalI GATC 3 cut(s) 102, 396, 479
MboI GATC 3 cut(s) 100, 394, 477
MboII GAAGA 2 cut(s) 89, 518
MflI RGATCY 1 cut(s) 477
MluCI AATT 3 cut(s) 285, 402, 558
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 2 cut(s) 152, 220
Mph1103I ATGCAT 1 cut(s) 432
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 388
MspA1I CMGCKG 1 cut(s) 466
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 6 cut(s) 443, 463, 472, 481, 490, 493
NdeII GATC 3 cut(s) 100, 394, 477
NlaIII CATG 3 cut(s) 137, 226, 437
NlaIV GGNNCC 3 cut(s) 54, 199, 352
NmuCI GTSAC 2 cut(s) 113, 206
NsiI ATGCAT 1 cut(s) 432
PagI TCATGA 1 cut(s) 133
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 459, 486, 495
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 3 cut(s) 54, 199, 352
PspPI GGNCC 1 cut(s) 350
PsuI RGATCY 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 466
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 458, 485, 494
Sau3AI GATC 3 cut(s) 100, 394, 477
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 167
SetI ASST 6 cut(s) 168, 278, 426, 444, 453, 468
SfaNI GCATC 2 cut(s) 439, 537
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 388
Sse9I AATT 3 cut(s) 285, 402, 558
SsiI CCGC 2 cut(s) 8, 564
SspMI CTAG 4 cut(s) 215, 282, 498, 569
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 111, 158
TaqI TCGA 1 cut(s) 471
TasI AATT 3 cut(s) 285, 402, 558
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 2 cut(s) 113, 206
TseI GCWGC 3 cut(s) 457, 484, 493
Tsp45I GTSAC 2 cut(s) 113, 206
TspDTI ATGAA 6 cut(s) 17, 122, 150, 211, 257, 555
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 4 cut(s) 215, 282, 498, 569
Zsp2I ATGCAT 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.