Rw1G021260

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0020737
Physical Location & Seq
Forward (+)
45471096 .. 45471620
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021260.1

Sequence Viewer

Length: 525 bp
ATGAACCCGCAAATGTTGTTGGATAATACCATTGGGAATATCGTTTTGTTGGCTCCTGTGGTATTAGAAATCTTGGAAGAGACAACAACAAATAGTAGTGATCAAGAACTGTGTGACTTGGTGAACTTGCTTCATGAATCCCTCAACCAATATAACAGTGAGTACCTGGACACTCCGAAGGGTAAAGAAGGATTTGGAGCCATTTGTGACTATCTAGATTTCATGGAGGAAGGGACTTTTATGAAACCACCACCAGAGATTTATACATTCACGAGCTGGACTAGAATTCTTAACAAACTGGATTTTGGATGGGGAAAGCCATTTCAGATTGGAGTCATCGGAAAAGTTGGACCCGTGTTTGGAAATCTAACTATATTTGTTGCATTACAATGCGATCAACAAATTGAAGCGTACGTGGGTGACTTTGGAGGAAAAGCAAATGGCTATGCTAGAAAAAGAAGCTCAATTTCTAGCATTTGCATCTCCAAATCCCTAATTTTCAAGCACTGTTCTTTAGTTTCATGA

Protein Analysis

174

Amino Acids

19.33

Weight (kDa)

4.76

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020737)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003588.1_g000004
rosa_samantha Rh1AG242700 Rh1BG213900 Rh1CG226500 Rh1CG226900
rosa_wichuraiana Rw1G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 2 cut(s) 164, 413
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 2 cut(s) 407, 502
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 2 cut(s) 276, 462
AluI AGCT 2 cut(s) 276, 462
Alw26I GTCTC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 133, 431
AvaII GGWCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 271
BccI CCATC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 4 cut(s) 215, 282, 450, 471
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 54, 199, 352
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 303
BsiWI CGTACG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 100, 394
BspACI CCGC 1 cut(s) 8
BspHI TCATGA 2 cut(s) 133, 521
BspLI GGNNCC 3 cut(s) 54, 199, 352
BsrI ACTGG 1 cut(s) 303
BssMI GATC 2 cut(s) 100, 394
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 111, 158, 509
Bst6I CTCTTC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 415
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 103, 397
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 100, 394
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 2 cut(s) 163, 505
CciI TCATGA 2 cut(s) 133, 521
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 2 cut(s) 163, 412
CviAII CATG 3 cut(s) 134, 223, 522
CviJI RGCY 6 cut(s) 53, 200, 276, 319, 444, 462
CviKI_1 RGCY 6 cut(s) 53, 200, 276, 319, 444, 462
CviQI GTAC 2 cut(s) 163, 412
DpnI GATC 2 cut(s) 102, 396
DpnII GATC 2 cut(s) 100, 394
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 137, 226, 525
FaiI YATR 8 cut(s) 135, 153, 224, 242, 264, 374, 447, 523
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 133, 222, 521
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 100
FokI GGATG 1 cut(s) 321
FspBI CTAG 4 cut(s) 215, 282, 450, 471
Hin1II CATG 3 cut(s) 137, 226, 525
HinfI GANTC 2 cut(s) 137, 333
HphI GGTGA 2 cut(s) 133, 431
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 177, 327, 341
Hpy188III TCNNGA 5 cut(s) 104, 134, 215, 271, 522
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 172, 182, 224
HpyCH4III ACNGT 3 cut(s) 111, 158, 509
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 383, 480
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 3 cut(s) 137, 226, 525
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 100, 394
LmnI GCTCC 2 cut(s) 58, 197
LpnPI CCDG 6 cut(s) 69, 152, 179, 262, 267, 284
LweI GCATC 1 cut(s) 489
MaeI CTAG 4 cut(s) 215, 282, 450, 471
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 3 cut(s) 113, 206, 419
MalI GATC 2 cut(s) 102, 396
MboI GATC 2 cut(s) 100, 394
MboII GAAGA 1 cut(s) 89
MluCI AATT 4 cut(s) 285, 402, 465, 495
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 3 cut(s) 152, 220, 422
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
NdeII GATC 2 cut(s) 100, 394
NlaIII CATG 3 cut(s) 137, 226, 525
NlaIV GGNNCC 3 cut(s) 54, 199, 352
NmuCI GTSAC 3 cut(s) 113, 206, 419
PagI TCATGA 2 cut(s) 133, 521
PfeI GAWTC 1 cut(s) 137
Pfl23II CGTACG 1 cut(s) 411
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
Ppu21I YACGTR 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspLI CGTACG 1 cut(s) 411
PspN4I GGNNCC 3 cut(s) 54, 199, 352
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 2 cut(s) 164, 413
RsaNI GTAC 2 cut(s) 163, 412
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 2 cut(s) 100, 394
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 167
SetI ASST 4 cut(s) 168, 278, 417, 464
SfaNI GCATC 1 cut(s) 489
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 388
Sse9I AATT 4 cut(s) 285, 402, 465, 495
SsiI CCGC 1 cut(s) 8
SspMI CTAG 4 cut(s) 215, 282, 450, 471
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 111, 158, 509
TaiI ACGT 1 cut(s) 417
TasI AATT 4 cut(s) 285, 402, 465, 495
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 163, 512
TseFI GTSAC 3 cut(s) 113, 206, 419
Tsp45I GTSAC 3 cut(s) 113, 206, 419
TspDTI ATGAA 6 cut(s) 17, 122, 150, 211, 257, 510
TspRI CASTG 2 cut(s) 163, 512
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 1 cut(s) 285
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 4 cut(s) 215, 282, 450, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.