Rh1CG226900

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020737
Physical Location & Seq
Forward (+)
48039395 .. 48039886
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG226900.1

Sequence Viewer

Length: 492 bp
ATGAACCCGCAAATGTTGTTGGATAATACCATTGGGAATATCGTTTTGTTGGCTCCTGTGGTATTAGAAATTTTGAAAGAGACAGCAACAAATAGTAGTGATCATGAACTGTGTGACTTAGTGAACTTGCTTCATGAATCCCTCAACCAATATAACAGTGAGTACCTGGACACTCTGAAGGGTAAAGAAGGATTTGGAGCCATTTGTGACTATCTAGATTTCATGGAGGAAGGGACTTTTATAAAACCACCACCAGAGATTTATACATTCACGAGCTGGACTAGAATTCTTAACAAACTGGATTTTGGATGGGGAAAGCCATTTCAAATTGGAGTCATTGGAAAAGTTGGACCTGTATTTGGAAATCTAACTATATTCGTTGCATTACAATGCGATCAACAAATTGAAGCGTGGGTGACTTTGGAGGAAAAGCAAATGGATATGCTAGAAAAAGATGCTCAATTTCTAGCATTTGCATCTCCAAATCCCTAA

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

4.32

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 155 6.2e-11 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020737)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003588.1_g000004
rosa_samantha Rh1AG242700 Rh1BG213900 Rh1CG226500 Rh1CG226900
rosa_wichuraiana Rw1G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AciI CCGC 1 cut(s) 8
AcsI RAATTY 2 cut(s) 69, 285
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 76, 326, 407
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 74
ApoI RAATTY 2 cut(s) 69, 285
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 427
AvaII GGWCC 1 cut(s) 350
BauI CACGAG 1 cut(s) 271
BccI CCATC 1 cut(s) 303
BciT130I CCWGG 1 cut(s) 167
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 4 cut(s) 215, 282, 446, 467
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 2 cut(s) 54, 199
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 2 cut(s) 445, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 100, 394
BspACI CCGC 1 cut(s) 8
BspHI TCATGA 2 cut(s) 103, 133
BspLI GGNNCC 2 cut(s) 54, 199
BsrI ACTGG 1 cut(s) 303
BssMI GATC 2 cut(s) 100, 394
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 111, 158
BstDEI CTNAG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 314
BstKTI GATC 2 cut(s) 103, 397
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 100, 394
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 314
BtsIMutI CAGTG 1 cut(s) 163
CciI TCATGA 2 cut(s) 103, 133
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 104, 134, 223
CviJI RGCY 4 cut(s) 53, 200, 276, 319
CviKI_1 RGCY 4 cut(s) 53, 200, 276, 319
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 118
DpnI GATC 2 cut(s) 102, 396
DpnII GATC 2 cut(s) 100, 394
Eco47I GGWCC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 3 cut(s) 107, 137, 226
FaiI YATR 8 cut(s) 105, 135, 153, 224, 242, 264, 374, 443
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 103, 133, 222
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 100
FokI GGATG 1 cut(s) 321
FspBI CTAG 4 cut(s) 215, 282, 446, 467
Hin1II CATG 3 cut(s) 107, 137, 226
HinfI GANTC 2 cut(s) 137, 333
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 104, 134, 215, 271
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 172, 182, 224
HpyCH4III ACNGT 2 cut(s) 111, 158
HpyCH4V TGCA 2 cut(s) 383, 476
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 3 cut(s) 107, 137, 226
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 100, 394
LmnI GCTCC 2 cut(s) 58, 197
LpnPI CCDG 7 cut(s) 69, 152, 179, 262, 267, 284, 366
LweI GCATC 2 cut(s) 445, 485
MaeI CTAG 4 cut(s) 215, 282, 446, 467
MaeIII GTNAC 3 cut(s) 113, 206, 415
MalI GATC 2 cut(s) 102, 396
MboI GATC 2 cut(s) 100, 394
MluCI AATT 5 cut(s) 69, 285, 327, 402, 461
MlyI GAGTC 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 328
MnlI CCTC 3 cut(s) 152, 220, 418
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 388
MspR9I CCNGG 1 cut(s) 167
MvaI CCWGG 1 cut(s) 167
NdeII GATC 2 cut(s) 100, 394
NlaIII CATG 3 cut(s) 107, 137, 226
NlaIV GGNNCC 2 cut(s) 54, 199
NmuCI GTSAC 3 cut(s) 113, 206, 415
PagI TCATGA 2 cut(s) 103, 133
PfeI GAWTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 54, 199
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 2 cut(s) 100, 394
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 167
SetI ASST 3 cut(s) 168, 278, 355
SfaNI GCATC 2 cut(s) 445, 485
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 388
Sse9I AATT 5 cut(s) 69, 285, 327, 402, 461
SsiI CCGC 1 cut(s) 8
SspMI CTAG 4 cut(s) 215, 282, 446, 467
StyD4I CCNGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 111, 158
TasI AATT 5 cut(s) 69, 285, 327, 402, 461
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 3 cut(s) 113, 206, 415
Tsp45I GTSAC 3 cut(s) 113, 206, 415
TspDTI ATGAA 5 cut(s) 17, 120, 122, 150, 211
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 2 cut(s) 69, 285
XbaI TCTAGA 1 cut(s) 214
XspI CTAG 4 cut(s) 215, 282, 446, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.