Rh1AG242700

vinorine synthase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020737
Physical Location & Seq
Forward (+)
45474945 .. 45475223
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG242700.1

Sequence Viewer

Length: 279 bp
ATGAACCCGCAAATGTTGTTGGATAATACCATTGGGAATATCATTTTGTGGGCTCCGGTGTTATTAGATATCTTGGAAGAGACAGCAACAAAGAGTGGTGATCATGAATTCTGTGATTTGGTGAACATGCTTCATGAATCCCTCAAGGAATTTAACAATGAGTACTTGGAGACTCTGAAGGGTAAAGAAGGATTTGGAGCCATTTGTGACTTACTAGATTTGATGGAGGAAGGGACTTCTATAAAACCACCGCTCGAGATTTATGCATTCACGAGCTAG

Protein Analysis

92

Amino Acids

10.35

Weight (kDa)

4.17

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020737)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003588.1_g000004
rosa_samantha Rh1AG242700 Rh1BG213900 Rh1CG226500 Rh1CG226900
rosa_wichuraiana Rw1G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 2 cut(s) 8, 251
AcsI RAATTY 2 cut(s) 107, 149
AcuI CTGAAG 1 cut(s) 197
AfaI GTAC 1 cut(s) 164
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Alw26I GTCTC 2 cut(s) 74, 164
Ama87I CYCGRG 1 cut(s) 254
ApoI RAATTY 2 cut(s) 107, 149
AsuHPI GGTGA 2 cut(s) 110, 133
AvaI CYCGRG 1 cut(s) 254
BanII GRGCYC 1 cut(s) 55
BauI CACGAG 1 cut(s) 271
BccI CCATC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 74, 164
BfaI CTAG 2 cut(s) 215, 277
BmcAI AGTACT 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 54, 199
BpuEI CTTGAG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 74, 164
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 1 cut(s) 100
BspACI CCGC 2 cut(s) 8, 251
BspHI TCATGA 2 cut(s) 103, 133
BspLI GGNNCC 2 cut(s) 54, 199
BsrBI CCGCTC 1 cut(s) 253
BssMI GATC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 271
Bst2BI CACGAG 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 72
BstKTI GATC 1 cut(s) 103
BstMAI GTCTC 2 cut(s) 74, 164
BstMBI GATC 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 130
CciI TCATGA 2 cut(s) 103, 133
Csp6I GTAC 1 cut(s) 163
CviAII CATG 3 cut(s) 104, 127, 134
CviJI RGCY 3 cut(s) 53, 200, 276
CviKI_1 RGCY 3 cut(s) 53, 200, 276
CviQI GTAC 1 cut(s) 163
DpnI GATC 1 cut(s) 102
DpnII GATC 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Eco24I GRGCYC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 107
EcoRV GATATC 1 cut(s) 70
EcoT22I ATGCAT 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 55
FaeI CATG 3 cut(s) 107, 130, 137
FaiI YATR 5 cut(s) 105, 128, 135, 242, 264
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 103, 126, 133
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 55
FspBI CTAG 2 cut(s) 215, 277
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 107, 130, 137
HinfI GANTC 2 cut(s) 137, 172
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 110, 133
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 104, 134, 256, 271
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 172, 182, 224
HpyCH4V TGCA 1 cut(s) 266
Hsp92II CATG 3 cut(s) 107, 130, 137
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 58, 197
LpnPI CCDG 1 cut(s) 69
MaeI CTAG 2 cut(s) 215, 277
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 102
MbiI CCGCTC 1 cut(s) 253
MboI GATC 1 cut(s) 100
MboII GAAGA 1 cut(s) 89
MhlI GDGCHC 1 cut(s) 55
MluCI AATT 2 cut(s) 107, 149
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 152, 220
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 153
MspI CCGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 266
NdeII GATC 1 cut(s) 100
NlaIII CATG 3 cut(s) 107, 130, 137
NlaIV GGNNCC 2 cut(s) 54, 199
NmuCI GTSAC 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 268
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 254
PagI TCATGA 2 cut(s) 103, 133
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 2 cut(s) 54, 199
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 153
Sau3AI GATC 1 cut(s) 100
ScaI AGTACT 1 cut(s) 164
SchI GAGTC 1 cut(s) 166
SduI GDGCHC 1 cut(s) 55
SetI ASST 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 254
SmlI CTYRAG 2 cut(s) 143, 254
SmoI CTYRAG 2 cut(s) 143, 254
Sse9I AATT 2 cut(s) 107, 149
SsiI CCGC 2 cut(s) 8, 251
SspMI CTAG 2 cut(s) 215, 277
TaqI TCGA 1 cut(s) 255
TasI AATT 2 cut(s) 107, 149
TatI WGTACW 1 cut(s) 162
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 4 cut(s) 17, 120, 122, 150
XapI RAATTY 2 cut(s) 107, 149
XceI RCATGY 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 254
XspI CTAG 2 cut(s) 215, 277
ZrmI AGTACT 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.