Rmu_sc0003593.1_g000004

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003593.1
OG0020054
Physical Location & Seq
Reverse (-)
20943 .. 22269
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
atgtgcaccacccattggagaaagttagagatcggaacaactgtggaagactcggaagtacatgaaaaggttcctgcaaaagcacatttagatcgattagcagagtgggctgaagtacaagatgaggaaacaaaacgtcaaatcttggtgaaggtcgatgagttgatgaatccaggttgtaccttacttaaggaaccagctgaaaagacaaaaaccaaaggtcgtccaaataaagtagacactagtacacatcgttgggcatccgggtttgagattgtagatgcattgttatttgagcgcgacaatcattcttcaataccaagtgttctaaaggtaacaagaacgtcgcatacaaagaaaacaaatggtcaagttgagaaaactaagatatgcttattgcccgggcacccactaccactagttccaccaaataggatttatcatgctgataacacagctaagagtttgtacttgaaatatcaagatcgtttccagcaatataaccagttgccgcatcctgaaagagtagccaatatatccttagaaattatggaacttggtgatgatgaaactactcaacttggtgatgttaatctttccagcaaagacaatacaatgcatcttcttggtgatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

212

Amino Acids

24.13

Weight (kDa)

6.07

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020054)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033566
rosa_multiflora Rmu_sc0003593.1_g000004
rosa_samantha Rh2AG432300 Rh2CG418100 Rh4DG039300 Rh5CG102800 Rh7BG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccB7I CCANNNNNTGG 1 cut(s) 15
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 300
AciI CCGC 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 5 cut(s) 60, 117, 181, 247, 470
AfiI CCNNNNNNNGG 1 cut(s) 15
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 315, 475
AhlI ACTAGT 2 cut(s) 242, 418
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 2 cut(s) 200, 458
AluI AGCT 2 cut(s) 200, 458
Alw21I GWGCWC 1 cut(s) 8
Alw44I GTGCAC 1 cut(s) 4
Ama87I CYCGRG 1 cut(s) 401
ApaLI GTGCAC 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 69
AspLEI GCGC 1 cut(s) 300
AsuC2I CCSGG 3 cut(s) 265, 402, 403
AsuHPI GGTGA 3 cut(s) 160, 572, 596
AvaI CYCGRG 1 cut(s) 401
BaeGI GKGCMC 2 cut(s) 8, 408
BanI GGYRCC 1 cut(s) 405
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 8
BciT130I CCWGG 1 cut(s) 174
BcnI CCSGG 3 cut(s) 265, 402, 403
BcuI ACTAGT 2 cut(s) 242, 418
BfaI CTAG 2 cut(s) 243, 419
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 512
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 4 cut(s) 174, 265, 402, 403
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 3 cut(s) 72, 195, 407
BmrFI CCNGG 4 cut(s) 174, 265, 402, 403
BmsI GCATC 4 cut(s) 269, 271, 523, 628
BpiI GAAGAC 1 cut(s) 54
BpuMI CCSGG 3 cut(s) 265, 402, 403
Bsa29I ATCGAT 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 401
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 505
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 174
BseCI ATCGAT 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 2 cut(s) 260, 514
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 505
BseSI GKGCMC 2 cut(s) 8, 408
Bsh1236I CGCG 1 cut(s) 300
BshNI GGYRCC 1 cut(s) 405
BshVI ATCGAT 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 2 cut(s) 264, 402
BslI CCNNNNNNNGG 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 8, 408
Bsp143I GATC 3 cut(s) 30, 91, 484
BspACI CCGC 1 cut(s) 512
BspDI ATCGAT 1 cut(s) 94
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 72, 195, 407
BspT107I GGYRCC 1 cut(s) 405
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 3 cut(s) 30, 91, 484
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 384, 459, 541
BstF5I GGATG 2 cut(s) 260, 514
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 3 cut(s) 33, 94, 487
BstMBI GATC 3 cut(s) 30, 91, 484
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 4 cut(s) 172, 263, 400, 401
BstSLI GKGCMC 2 cut(s) 8, 408
BstUI CGCG 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 94
BsuTUI ATCGAT 1 cut(s) 94
BtsCI GGATG 2 cut(s) 260, 514
CfoI GCGC 1 cut(s) 300
Cfr9I CCCGGG 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 94
Csp6I GTAC 5 cut(s) 59, 116, 180, 246, 469
CviAII CATG 2 cut(s) 62, 443
CviJI RGCY 4 cut(s) 110, 200, 458, 530
CviKI_1 RGCY 4 cut(s) 110, 200, 458, 530
CviQI GTAC 5 cut(s) 59, 116, 180, 246, 469
DdeI CTNAG 3 cut(s) 384, 459, 541
DpnI GATC 3 cut(s) 32, 93, 486
DpnII GATC 3 cut(s) 30, 91, 484
Eco57I CTGAAG 1 cut(s) 132
Eco88I CYCGRG 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 172
EcoT22I ATGCAT 2 cut(s) 286, 621
FaeI CATG 2 cut(s) 65, 446
FaiI YATR 7 cut(s) 63, 351, 391, 444, 501, 536, 551
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 2 cut(s) 61, 442
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 512
FokI GGATG 2 cut(s) 247, 501
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 2 cut(s) 243, 419
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 512
HapII CCGG 2 cut(s) 264, 402
HhaI GCGC 1 cut(s) 300
Hin1II CATG 2 cut(s) 65, 446
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 2 cut(s) 50, 169
HpaII CCGG 2 cut(s) 264, 402
HphI GGTGA 3 cut(s) 160, 572, 596
Hpy166II GTNNAC 3 cut(s) 6, 238, 248
Hpy188I TCNGA 2 cut(s) 35, 55
Hpy188III TCNNGA 2 cut(s) 482, 518
Hpy8I GTNNAC 3 cut(s) 6, 238, 248
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 2 cut(s) 136, 344
HpyCH4V TGCA 4 cut(s) 6, 77, 284, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 384, 459, 541
HpySE526I ACGT 2 cut(s) 136, 344
Hsp92II CATG 2 cut(s) 65, 446
HspAI GCGC 1 cut(s) 298
Kzo9I GATC 3 cut(s) 30, 91, 484
LweI GCATC 4 cut(s) 269, 271, 523, 628
MaeI CTAG 2 cut(s) 243, 419
MaeII ACGT 2 cut(s) 136, 344
MaeIII GTNAC 1 cut(s) 334
MalI GATC 3 cut(s) 32, 93, 486
MboI GATC 3 cut(s) 30, 91, 484
MboII GAAGA 3 cut(s) 59, 303, 614
MhlI GDGCHC 2 cut(s) 8, 408
MluCI AATT 1 cut(s) 546
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 1 cut(s) 118
Mph1103I ATGCAT 2 cut(s) 286, 621
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 189, 591
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 2 cut(s) 264, 402
MspR9I CCNGG 4 cut(s) 174, 265, 402, 403
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 3 cut(s) 265, 402, 403
NdeII GATC 3 cut(s) 30, 91, 484
NlaIII CATG 2 cut(s) 65, 446
NlaIV GGNNCC 3 cut(s) 72, 195, 407
NsiI ATGCAT 2 cut(s) 286, 621
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 15
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 72, 195, 407
PsrI GAACNNNNNNTAC 2 cut(s) 334, 366
PvuII CAGCTG 1 cut(s) 200
RsaI GTAC 5 cut(s) 60, 117, 181, 247, 470
RsaNI GTAC 5 cut(s) 59, 116, 180, 246, 469
SaqAI TTAA 2 cut(s) 189, 591
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 3 cut(s) 30, 91, 484
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 4 cut(s) 174, 265, 402, 403
SduI GDGCHC 2 cut(s) 8, 408
SfaNI GCATC 4 cut(s) 269, 271, 523, 628
SmaI CCCGGG 1 cut(s) 403
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SpeI ACTAGT 2 cut(s) 242, 418
SrfI GCCCGGGC 1 cut(s) 403
Sse9I AATT 1 cut(s) 546
SsiI CCGC 1 cut(s) 512
SspMI CTAG 2 cut(s) 243, 419
StyD4I CCNGG 4 cut(s) 172, 263, 400, 401
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 2 cut(s) 139, 347
TaqI TCGA 2 cut(s) 94, 156
TasI AATT 1 cut(s) 546
TatI WGTACW 4 cut(s) 58, 115, 245, 468
TauI GCSGC 1 cut(s) 514
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 189, 591
Tru9I TTAA 2 cut(s) 189, 591
TspDTI ATGAA 3 cut(s) 78, 182, 582
TspMI CCCGGG 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 188
VneI GTGCAC 1 cut(s) 4
XmaI CCCGGG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 2 cut(s) 243, 419
Zsp2I ATGCAT 2 cut(s) 286, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.