Rmu_sc0003610.1_g000038

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0004415
Physical Location & Seq
Reverse (-)
160784 .. 165146
4363 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1725 bp
atggagctgccacagccccgtccgtttggaggcgaaggaggaagaaaaccaacgcatgactttctgtcgttgtacactagtcattcaactgcccaacaagatccaataccaccttctcaaggaggttatcttgaaactcatgattttctacaaccacttgaacgaatgggaatgggaaagacctgtgccaaagaagaaacctcggttgagatcatatcaccaagtagaagtagtgttgaaaagccgccatgtgtggcgcaacggccaacttctgtggagcacattcttcccggtgggattgggacttacagtataagccacatttcgtattttaatcaaagggttccaaaaccagaggaaaacgtattcccggttgctcctcaagcaagtagtacccatgaaaggaatgatgaaacctcaaactgcagttcttatgccggaagtggtttcactttgtgggacgaatctgcagcaatgaagggaaagacagggaaggagaatgtggtggaaagaccaggtttaagagggcaatggacgtcgtcagagaggccatcacagtcatcttccactaacaaccgcaactgcttcagctctcagtcatctgggcagaagaacctgagcttcatggagatgatgaagtccgctgccaagggttgcacccaggaagaagaacttgacgatgaggaagagtttgctctgaaaaaggagatgtccacttctactaccactgccactaccccctacaacggagaattacgggttaaggttgatgttaagagctctgatcagaaagctaacacgccacgatccaaacattctgccactgaacaacgaaggaggagtaaaataaatgacagattccaaatgttgagagagctcattcctcatagtgatcaaaagagggacaaggcatcatttctattagaggttatcgaatacattcagtatttacaggaaaaagtaaccaagtatgaggctccataccaaggttggaaccatgatccagcaaaattgatgccttggggaaataacaagcttggggaaagttactgtgatcaatctcgaagtatgaatggtggatctggtcctgcattagtgtttgctgcctctgcctcaaaatttgaggagaaaactacttcagtgtctcctactattcctggaagtgctcagaacctggtagaatctgatacgagtactgaaactacattcagagctaaggattaccccaatggaataacaaacaaggcaaatccctatcctctgtcaatgcagtcgaacttctcgacacctgtcagaagtggtagtgcagcacctcatcttccacctagattgccatctgatgcagagaacacatcatctcatcctcgctccatgttattcccgacaaaatcatgtactgctgatgctggtgccattagtgataagctaaaagaacatgaacttacaattgaaggtggaagaattaacatctcaagtgcgtactctcaagggttattaaatactcttacacaagccctgcagaattctggtgtggatttgtcacaggccagcatctcggtgcaaatcgagcttgggaagcaagcatgtagtagaacggctatacccaaatccattgtcaaggaaaatgagattccctctatgactccagggaaaaagcaccctagaatttcagttggtgaagactcagaacaagcccaaaagaagctcaggacaggcagacactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

574

Amino Acids

63.01

Weight (kDa)

7.22

Isoelectric Point (pI)

53.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 269 - 318 2.1e-16 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 1409
AciI CCGC 3 cut(s) 245, 577, 642
AclWI GGATC 4 cut(s) 95, 801, 995, 1087
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 3 cut(s) 1118, 1522, 1665
AcuI CTGAAG 2 cut(s) 571, 1122
AcyI GRCGYC 1 cut(s) 536
AdeI CACNNNGTG 1 cut(s) 456
AfaI GTAC 5 cut(s) 74, 394, 1195, 1396, 1481
AfiI CCNNNNNNNGG 5 cut(s) 29, 119, 402, 746, 986
AgsI TTSAA 5 cut(s) 87, 134, 161, 239, 1451
AhdI GACNNNNNGTC 1 cut(s) 64
AhlI ACTAGT 1 cut(s) 77
AjnI CCWGG 5 cut(s) 514, 660, 1156, 1173, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 97, 129
Alw21I GWGCWC 4 cut(s) 282, 782, 879, 1168
Alw26I GTCTC 1 cut(s) 1149
AlwI GGATC 4 cut(s) 95, 801, 995, 1087
AlwNI CAGNNNCTG 1 cut(s) 1174
AoxI GGCC 3 cut(s) 263, 548, 1545
ApeKI GCWGC 5 cut(s) 7, 470, 644, 1103, 1307
ApoI RAATTY 3 cut(s) 1118, 1522, 1665
ArsI GACNNNNNNTTYG 2 cut(s) 1599, 1631
Asp700I GAANNNNTTC 1 cut(s) 939
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 1085
AsuC2I CCSGG 2 cut(s) 291, 371
AsuHPI GGTGA 2 cut(s) 210, 1688
AvaII GGWCC 1 cut(s) 1085
BanI GGYRCC 1 cut(s) 1409
BanII GRGCYC 2 cut(s) 782, 879
BbsI GAAGAC 1 cut(s) 1686
Bbv12I GWGCWC 4 cut(s) 282, 782, 879, 1168
BbvI GCAGC 4 cut(s) 482, 631, 1090, 1319
BccI CCATC 2 cut(s) 559, 1342
BceAI ACGGC 2 cut(s) 278, 1611
BciT130I CCWGG 5 cut(s) 516, 662, 1158, 1175, 1647
BclI TGATCA 3 cut(s) 784, 892, 1054
BcnI CCSGG 2 cut(s) 291, 371
BcoDI GTCTC 1 cut(s) 1149
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 3 cut(s) 78, 1326, 1662
BfmI CTRYAG 3 cut(s) 424, 468, 1517
BisI GCNGC 6 cut(s) 8, 245, 471, 645, 1104, 1308
BlsI GCNGC 6 cut(s) 9, 246, 472, 646, 1105, 1309
BmcAI AGTACT 1 cut(s) 1195
Bme1390I CCNGG 7 cut(s) 291, 371, 516, 662, 1158, 1175, 1647
Bme18I GGWCC 1 cut(s) 1085
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 4 cut(s) 345, 978, 995, 1411
BmrFI CCNGG 7 cut(s) 291, 371, 516, 662, 1158, 1175, 1647
BmsI GCATC 5 cut(s) 920, 1005, 1330, 1393, 1560
BoxI GACNNNNGTC 1 cut(s) 1289
BpiI GAAGAC 1 cut(s) 1686
BplI GAGNNNNNCTC 2 cut(s) 1619, 1651
BpmI CTGGAG 1 cut(s) 1629
Bpu10I CCTNAGC 3 cut(s) 617, 1215, 1706
BpuEI CTTGAG 4 cut(s) 102, 366, 1456, 1470
BpuMI CCSGG 2 cut(s) 291, 371
BsaBI GATNNNNATC 1 cut(s) 1333
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 6 cut(s) 201, 648, 660, 985, 1019, 1646
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 119, 402, 746, 986
Bse3DI GCAATG 2 cut(s) 480, 536
Bse8I GATNNNNATC 1 cut(s) 1333
BseBI CCWGG 5 cut(s) 516, 662, 1158, 1175, 1647
BseDI CCNNGG 6 cut(s) 201, 648, 660, 985, 1019, 1646
BseGI GGATG 1 cut(s) 1360
BseJI GATNNNNATC 1 cut(s) 1333
BseLI CCNNNNNNNGG 5 cut(s) 29, 119, 402, 746, 986
BseMI GCAATG 2 cut(s) 480, 536
BseMII CTCAG 5 cut(s) 608, 608, 1181, 1698, 1720
BseRI GAGGAG 3 cut(s) 369, 853, 1139
BseXI GCAGC 4 cut(s) 482, 631, 1090, 1319
BsgI GTGCAG 1 cut(s) 1326
BshFI GGCC 3 cut(s) 265, 550, 1547
BshNI GGYRCC 1 cut(s) 1409
BsiHKAI GWGCWC 4 cut(s) 282, 782, 879, 1168
BsiSI CCGG 3 cut(s) 291, 371, 438
BslFI GGGAC 3 cut(s) 316, 473, 917
BslI CCNNNNNNNGG 5 cut(s) 29, 119, 402, 746, 986
BsmAI GTCTC 1 cut(s) 1149
BsmFI GGGAC 3 cut(s) 316, 473, 917
BsnI GGCC 3 cut(s) 265, 550, 1547
Bsp1286I GDGCHC 4 cut(s) 282, 782, 879, 1168
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
BspACI CCGC 3 cut(s) 245, 577, 642
BspANI GGCC 3 cut(s) 265, 550, 1547
BspCNI CTCAG 5 cut(s) 607, 609, 1180, 1697, 1719
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 4 cut(s) 345, 978, 995, 1411
BspMAI CTGCAG 3 cut(s) 428, 472, 1521
BspPI GGATC 4 cut(s) 95, 801, 995, 1087
BspT107I GGYRCC 1 cut(s) 1409
BsrDI GCAATG 2 cut(s) 480, 536
BsrGI TGTACA 1 cut(s) 72
BssECI CCNNGG 6 cut(s) 201, 648, 660, 985, 1019, 1646
BssMI GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 3 cut(s) 648, 985, 1019
Bst2UI CCWGG 5 cut(s) 516, 662, 1158, 1175, 1647
Bst4CI ACNGT 3 cut(s) 311, 558, 1052
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 1549, 1581
BstDEI CTNAG 6 cut(s) 594, 617, 1167, 1215, 1684, 1706
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 1360
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 8 cut(s) 103, 213, 787, 809, 895, 1003, 1057, 1082
BstMAI GTCTC 1 cut(s) 1149
BstMBI GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
BstMWI GCNNNNNNNGC 5 cut(s) 13, 383, 1109, 1567, 1576
BstNI CCWGG 5 cut(s) 516, 662, 1158, 1175, 1647
BstNSI RCATGY 1 cut(s) 1587
BstPAI GACNNNNGTC 1 cut(s) 1289
BstSCI CCNGG 7 cut(s) 289, 369, 514, 660, 1156, 1173, 1645
BstSFI CTRYAG 3 cut(s) 424, 468, 1517
BstV1I GCAGC 4 cut(s) 482, 631, 1090, 1319
BstV2I GAAGAC 1 cut(s) 1686
BstX2I RGATCY 2 cut(s) 100, 1079
BstYI RGATCY 2 cut(s) 100, 1079
BsuRI GGCC 3 cut(s) 265, 550, 1547
BtsCI GGATG 1 cut(s) 1360
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 3 cut(s) 726, 822, 1146
Cac8I GCNNGC 2 cut(s) 1549, 1581
CaiI CAGNNNCTG 1 cut(s) 1174
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 1085
CsiI ACCWGGT 2 cut(s) 514, 1173
Csp6I GTAC 5 cut(s) 73, 393, 1194, 1395, 1480
CspCI CAANNNNNGTGG 4 cut(s) 255, 290, 1311, 1346
CviQI GTAC 5 cut(s) 73, 393, 1194, 1395, 1480
DdeI CTNAG 6 cut(s) 594, 617, 1167, 1215, 1684, 1706
DpnI GATC 8 cut(s) 102, 212, 786, 808, 894, 1002, 1056, 1081
DpnII GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
DraIII CACNNNGTG 1 cut(s) 456
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 681
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 681
Ecl136II GAGCTC 2 cut(s) 780, 877
Eco130I CCWWGG 3 cut(s) 648, 985, 1019
Eco24I GRGCYC 2 cut(s) 782, 879
Eco47I GGWCC 1 cut(s) 1085
Eco53kI GAGCTC 2 cut(s) 780, 877
Eco57I CTGAAG 2 cut(s) 571, 1122
EcoICRI GAGCTC 2 cut(s) 780, 877
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 1522
EcoRII CCWGG 5 cut(s) 514, 660, 1156, 1173, 1645
EcoT14I CCWWGG 3 cut(s) 648, 985, 1019
EcoT38I GRGCYC 2 cut(s) 782, 879
ErhI CCWWGG 3 cut(s) 648, 985, 1019
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 3 cut(s) 316, 473, 917
FbaI TGATCA 3 cut(s) 784, 892, 1054
Fnu4HI GCNGC 6 cut(s) 8, 245, 471, 645, 1104, 1308
FokI GGATG 1 cut(s) 1347
FriOI GRGCYC 2 cut(s) 782, 879
Fsp4HI GCNGC 6 cut(s) 8, 245, 471, 645, 1104, 1308
FspBI CTAG 3 cut(s) 78, 1326, 1662
GlaI GCGC 1 cut(s) 258
GluI GCNGC 6 cut(s) 8, 245, 471, 645, 1104, 1308
GsuI CTGGAG 1 cut(s) 1629
HaeIII GGCC 3 cut(s) 265, 550, 1547
HapII CCGG 3 cut(s) 291, 371, 438
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 536
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 6 cut(s) 464, 858, 1181, 1630, 1642, 1682
HpaII CCGG 3 cut(s) 291, 371, 438
HphI GGTGA 2 cut(s) 210, 1688
Hpy166II GTNNAC 2 cut(s) 75, 714
Hpy188III TCNNGA 6 cut(s) 131, 140, 1062, 1282, 1381, 1708
Hpy8I GTNNAC 2 cut(s) 75, 714
Hpy99I CGWCG 1 cut(s) 541
HpyAV CCTTC 6 cut(s) 29, 123, 472, 487, 828, 1445
HpyCH4III ACNGT 3 cut(s) 311, 558, 1052
HpyCH4IV ACGT 2 cut(s) 363, 536
HpyCH4V TGCA 9 cut(s) 426, 470, 657, 1091, 1270, 1307, 1343, 1519, 1561
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 383, 1109, 1567, 1576
HpyF3I CTNAG 6 cut(s) 594, 617, 1167, 1215, 1684, 1706
HpySE526I ACGT 2 cut(s) 363, 536
Hsp92I GRCGYC 1 cut(s) 536
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 3 cut(s) 784, 892, 1054
Kzo9I GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
LmnI GCTCC 5 cut(s) 4, 277, 382, 982, 1373
Lsp1109I GCAGC 4 cut(s) 482, 631, 1090, 1319
LweI GCATC 5 cut(s) 920, 1005, 1330, 1393, 1560
MabI ACCWGGT 2 cut(s) 514, 1173
MaeI CTAG 3 cut(s) 78, 1326, 1662
MaeII ACGT 2 cut(s) 363, 536
MaeIII GTNAC 3 cut(s) 961, 1046, 1539
MalI GATC 8 cut(s) 102, 212, 786, 808, 894, 1002, 1056, 1081
MboI GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
MfeI CAATTG 1 cut(s) 1446
MflI RGATCY 2 cut(s) 100, 1079
MhlI GDGCHC 4 cut(s) 282, 782, 879, 1168
MluCI AATT 7 cut(s) 752, 1010, 1118, 1446, 1461, 1522, 1665
MlyI GAGTC 2 cut(s) 1636, 1676
MmeI TCCRAC 1 cut(s) 971
MroXI GAANNNNTTC 1 cut(s) 939
MseI TTAA 6 cut(s) 333, 521, 762, 774, 1464, 1496
MslI CAYNNNNRTG 2 cut(s) 629, 1556
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 3 cut(s) 291, 371, 438
MspR9I CCNGG 7 cut(s) 291, 371, 516, 662, 1158, 1175, 1647
MunI CAATTG 1 cut(s) 1446
MvaI CCWGG 5 cut(s) 516, 662, 1158, 1175, 1647
MwoI GCNNNNNNNGC 5 cut(s) 13, 383, 1109, 1567, 1576
NciI CCSGG 2 cut(s) 291, 371
NdeII GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
NlaIV GGNNCC 4 cut(s) 345, 978, 995, 1411
NmuCI GTSAC 1 cut(s) 1539
NspI RCATGY 1 cut(s) 1587
PagI TCATGA 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 1280
PdmI GAANNNNTTC 1 cut(s) 939
PfeI GAWTC 4 cut(s) 464, 858, 1181, 1630
PflFI GACNNNGTC 1 cut(s) 538
PfoI TCCNGGA 1 cut(s) 1156
PkrI GCNGC 6 cut(s) 9, 246, 472, 646, 1105, 1309
PleI GAGTC 2 cut(s) 1636, 1676
PpsI GAGTC 2 cut(s) 1636, 1676
PshAI GACNNNNGTC 1 cut(s) 1289
Psp124BI GAGCTC 2 cut(s) 782, 879
Psp6I CCWGG 5 cut(s) 514, 660, 1156, 1173, 1645
PspGI CCWGG 5 cut(s) 514, 660, 1156, 1173, 1645
PspN4I GGNNCC 4 cut(s) 345, 978, 995, 1411
PspPI GGNCC 1 cut(s) 1085
PstI CTGCAG 3 cut(s) 428, 472, 1521
PstNI CAGNNNCTG 1 cut(s) 1174
PsuI RGATCY 2 cut(s) 100, 1079
PsyI GACNNNGTC 1 cut(s) 538
RsaI GTAC 5 cut(s) 74, 394, 1195, 1396, 1481
RsaNI GTAC 5 cut(s) 73, 393, 1194, 1395, 1480
RseI CAYNNNNRTG 2 cut(s) 629, 1556
SacI GAGCTC 2 cut(s) 782, 879
SaqAI TTAA 6 cut(s) 333, 521, 762, 774, 1464, 1496
SatI GCNGC 6 cut(s) 8, 245, 471, 645, 1104, 1308
Sau3AI GATC 8 cut(s) 100, 210, 784, 806, 892, 1000, 1054, 1079
Sau96I GGNCC 1 cut(s) 1085
ScaI AGTACT 1 cut(s) 1195
SchI GAGTC 2 cut(s) 1636, 1676
ScrFI CCNGG 7 cut(s) 291, 371, 516, 662, 1158, 1175, 1647
SduI GDGCHC 4 cut(s) 282, 782, 879, 1168
SexAI ACCWGGT 2 cut(s) 514, 1173
SfaNI GCATC 5 cut(s) 920, 1005, 1330, 1393, 1560
SfcI CTRYAG 3 cut(s) 424, 468, 1517
SinI GGWCC 1 cut(s) 1085
SmiMI CAYNNNNRTG 2 cut(s) 629, 1556
SmlI CTYRAG 4 cut(s) 117, 381, 1471, 1485
SmoI CTYRAG 4 cut(s) 117, 381, 1471, 1485
SpeI ACTAGT 1 cut(s) 77
Sse9I AATT 7 cut(s) 752, 1010, 1118, 1446, 1461, 1522, 1665
SsiI CCGC 3 cut(s) 245, 577, 642
SspMI CTAG 3 cut(s) 78, 1326, 1662
SstI GAGCTC 2 cut(s) 782, 879
StyD4I CCNGG 7 cut(s) 289, 369, 514, 660, 1156, 1173, 1645
StyI CCWWGG 3 cut(s) 648, 985, 1019
TaaI ACNGT 3 cut(s) 311, 558, 1052
TaiI ACGT 2 cut(s) 366, 539
TaqI TCGA 5 cut(s) 933, 1063, 1274, 1283, 1566
TasI AATT 7 cut(s) 752, 1010, 1118, 1446, 1461, 1522, 1665
TatI WGTACW 3 cut(s) 72, 1193, 1394
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 4 cut(s) 464, 858, 1181, 1630
Tru1I TTAA 6 cut(s) 333, 521, 762, 774, 1464, 1496
Tru9I TTAA 6 cut(s) 333, 521, 762, 774, 1464, 1496
TscAI CASTG 3 cut(s) 733, 829, 1146
TseFI GTSAC 1 cut(s) 1539
TseI GCWGC 5 cut(s) 7, 470, 644, 1103, 1307
Tsp45I GTSAC 1 cut(s) 1539
TspDTI ATGAA 7 cut(s) 414, 426, 491, 613, 650, 1085, 1452
TspGWI ACGGA 2 cut(s) 12, 762
TspRI CASTG 3 cut(s) 733, 829, 1146
Tth111I GACNNNGTC 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 1085
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 3 cut(s) 1118, 1522, 1665
XceI RCATGY 1 cut(s) 1587
XcmI CCANNNNNNNNNTGG 1 cut(s) 987
XmnI GAANNNNTTC 1 cut(s) 939
XspI CTAG 3 cut(s) 78, 1326, 1662
ZraI GACGTC 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 1195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.